AT3G62840 : -
Query Information
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AGICode AT3G62840
Description Small nuclear ribonucleoprotein family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G62840 Small nuclear ribonucleoprotein family protein 1 0.3 -0.33
2 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.83 0.32 -0.35
3 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.82 0.32 -0.29
4 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.82 0.32 -0.31
5 AT2G03780 Translin family protein 0.81 0.33 -0.33
6 AT1G03080 kinase interacting (KIP1-like) family protein -0.8 0.32 -0.3
7 AT3G02920 Replication protein A, subunit RPA32 ATRPA32B, RPA32B 0.8 0.31 -0.32
8 AT2G46230 PIN domain-like family protein 0.79 0.32 -0.29
9 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.79 0.31 -0.32
10 AT1G11240 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12
(InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins
in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921;
Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes -
933 (source: NCBI BLink).		 0.79 0.33 -0.29
11 AT3G44380 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.79 0.33 -0.33
12 AT2G24490 replicon protein A2 ATRPA2, ATRPA32A, SUPPRESSOR OF
ROS1, replicon protein A2, RPA32A		 0.79 0.32 -0.32
13 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.78 0.32 -0.31
14 AT1G75990 PAM domain (PCI/PINT associated module) protein 0.78 0.31 -0.32
15 AT3G02820 zinc knuckle (CCHC-type) family protein 0.77 0.3 -0.33
16 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.77 0.31 -0.33
17 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 0.77 0.3 -0.33
18 AT1G11800 endonuclease/exonuclease/phosphatase family protein 0.77 0.33 -0.33
19 AT5G20920 eukaryotic translation initiation factor 2 beta subunit eukaryotic translation initiation
factor 2 beta subunit, embryo
defective 1401		 0.77 0.3 -0.31
20 AT5G17620 CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1
(InterPro:IPR010604); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.34 -0.33
21 AT1G21690 ATPase family associated with various cellular activities
(AAA) 		embryo defective 1968, replication
factor C 4		 0.77 0.32 -0.32
22 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.77 0.32 -0.34
23 AT1G66750 CDK-activating kinase 4 AT;CDKD;2, CDK-activating kinase
4, CDK-ACTIVATING KINASE 4,
CYCLIN-DEPENDENT KINASE D1;2,
CDKD;2		 0.77 0.32 -0.32
24 AT4G25210 DNA-binding storekeeper protein-related transcriptional
regulator		 0.76 0.32 -0.31
25 AT1G71260 WHIRLY 2 WHIRLY 2, WHIRLY 2 0.76 0.31 -0.32
26 AT5G40600 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.76 0.33 -0.31
27 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.76 0.33 -0.29
28 AT1G26840 origin recognition complex protein 6 ARABIDOPSIS THALIANA ORIGIN
RECOGNITION COMPLEX PROTEIN 6,
origin recognition complex protein
6		 0.76 0.33 -0.32
29 AT5G19570 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0546
(InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.76 0.3 -0.3
30 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.76 0.31 -0.34
31 AT4G30680 Initiation factor eIF-4 gamma, MA3 0.75 0.32 -0.3
32 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.75 0.34 -0.32
33 AT2G31725 Eukaryotic protein of unknown function (DUF842) 0.75 0.33 -0.3
34 AT1G18450 actin-related protein 4 actin-related protein 4,
actin-related protein 4		 0.75 0.3 -0.29
35 AT1G10430 protein phosphatase 2A-2 protein phosphatase 2A-2 0.75 0.33 -0.33
36 AT5G25080 Sas10/Utp3/C1D family 0.75 0.32 -0.33
37 AT4G28440 Nucleic acid-binding, OB-fold-like protein 0.74 0.32 -0.32
38 AT5G28840 GDP-D-mannose 3',5'-epimerase GDP-D-mannose 3',5'-epimerase 0.74 0.33 -0.31
39 AT3G14080 Small nuclear ribonucleoprotein family protein 0.74 0.32 -0.34
40 AT5G49220 Protein of unknown function (DUF789) 0.74 0.33 -0.32
41 AT1G21540 AMP-dependent synthetase and ligase family protein 0.74 0.31 -0.34
42 AT2G01260 Protein of unknown function (DUF789) 0.74 0.34 -0.32
43 AT5G41060 DHHC-type zinc finger family protein 0.74 0.32 -0.32
44 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 0.74 0.31 -0.31
45 AT3G27360 Histone superfamily protein 0.73 0.3 -0.3
46 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 0.73 0.33 -0.33
47 AT5G37890 Protein with RING/U-box and TRAF-like domains 0.73 0.32 -0.32
48 AT1G65700 Small nuclear ribonucleoprotein family protein 0.73 0.3 -0.29
49 AT2G40780 Nucleic acid-binding, OB-fold-like protein 0.73 0.31 -0.32
50 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.73 0.32 -0.32
51 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.73 0.32 -0.3
52 AT3G62010 unknown protein; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; Has 553 Blast hits to 216 proteins in 93
species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi -
58; Plants - 108; Viruses - 0; Other Eukaryotes - 70
(source: NCBI BLink).		 -0.73 0.32 -0.32
53 AT5G44170 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.3 -0.34
54 AT2G25490 EIN3-binding F box protein 1 EIN3-binding F box protein 1, FBL6 -0.72 0.3 -0.33
55 AT2G41480 Peroxidase superfamily protein -0.72 0.31 -0.32
56 AT4G28190 Developmental regulator, ULTRAPETALA ULTRAPETALA, ULTRAPETALA1 0.72 0.31 -0.33
57 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.72 0.33 -0.31
58 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.72 0.31 -0.31
59 AT1G24460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins
in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa -
70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other
Eukaryotes - 33775 (source: NCBI BLink).		 TGN-localized SYP41 interacting
protein		 -0.72 0.32 -0.34
60 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.71 0.31 -0.31
61 AT4G15330 cytochrome P450, family 705, subfamily A, polypeptide 1 cytochrome P450, family 705,
subfamily A, polypeptide 1		 -0.71 0.34 -0.33
62 AT3G14270 phosphatidylinositol-4-phosphate 5-kinase family protein FORMS APLOID AND BINUCLEATE CELLS
1B		 -0.71 0.33 -0.32
63 AT5G54730 homolog of yeast autophagy 18 (ATG18) F ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18 (ATG18) F,
homolog of yeast autophagy 18
(ATG18) F, homolog of yeast
autophagy 18 (ATG18) F		 -0.71 0.3 -0.31
64 AT5G50170 C2 calcium/lipid-binding and GRAM domain containing protein -0.71 0.31 -0.31
65 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 -0.7 0.32 -0.3
66 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.69 0.31 -0.36
67 AT2G27390 proline-rich family protein -0.69 0.28 -0.31
68 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.69 0.31 -0.31
69 AT1G10050 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.69 0.33 -0.33
70 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.68 0.32 -0.31
71 AT3G50650 GRAS family transcription factor -0.68 0.31 -0.34
72 AT3G16857 response regulator 1 response regulator 1, response
regulator 1		 -0.68 0.33 -0.3
73 AT5G19310 Homeotic gene regulator -0.68 0.31 -0.31
74 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.67 0.33 -0.32
75 AT1G36510 Nucleic acid-binding proteins superfamily -0.67 0.31 -0.31
76 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.67 0.32 -0.31
77 AT3G23240 ethylene response factor 1 ETHYLENE RESPONSE FACTOR 1,
ethylene response factor 1		 -0.67 0.31 -0.34
78 AT1G59650 Protein of unknown function (DUF1336) CW14 -0.67 0.3 -0.28
79 AT1G24330 ARM repeat superfamily protein -0.66 0.31 -0.32
80 AT1G78490 cytochrome P450, family 708, subfamily A, polypeptide 3 cytochrome P450, family 708,
subfamily A, polypeptide 3		 -0.65 0.31 -0.33
81 AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.65 0.32 -0.33
82 AT5G52410 CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.65 0.3 -0.32
83 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 -0.65 0.31 -0.32
84 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 -0.65 0.3 -0.33
85 AT1G55250 histone mono-ubiquitination 2 histone mono-ubiquitination 2 -0.64 0.33 -0.33
86 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.64 0.31 -0.33
87 AT5G42580 cytochrome P450, family 705, subfamily A, polypeptide 12 cytochrome P450, family 705,
subfamily A, polypeptide 12		 -0.64 0.33 -0.31
88 AT1G53790 F-box and associated interaction domains-containing protein -0.64 0.29 -0.32
89 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.63 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		0.77 0.44 -0.45 C0228
91 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.7 0.45 -0.44 C0105