AT3G62170 : VANGUARD 1 homolog 2
Query Information
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AGICode AT3G62170
Description VANGUARD 1 homolog 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G62170 VANGUARD 1 homolog 2 VANGUARD 1 homolog 2 1 0.3 -0.3
2 AT1G08710 F-box family protein -0.66 0.32 -0.31
3 AT3G07450 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.64 0.3 -0.3
4 AT5G12990 CLAVATA3/ESR-RELATED 40 CLAVATA3/ESR-RELATED 40 -0.64 0.31 -0.33
5 AT5G37090 transposable element gene 0.63 0.32 -0.31
6 AT1G36020 BEST Arabidopsis thaliana protein match is: DEAD/DEAH box
RNA helicase family protein (TAIR:AT1G35530.1); Has 18
Blast hits to 18 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.31 -0.33
7 AT1G44510 transposable element gene -0.62 0.32 -0.31
8 AT1G04670 unknown protein; Has 40 Blast hits to 40 proteins in 14
species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2;
Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.3 -0.32
9 AT1G30100 nine-cis-epoxycarotenoid dioxygenase 5 NINE-CIS-EPOXYCAROTENOID
DIOXYGENASE 5,
nine-cis-epoxycarotenoid
dioxygenase 5		 0.62 0.31 -0.31
10 AT5G04110 DNA GYRASE B3 DNA GYRASE B3 0.61 0.32 -0.32
11 AT1G36095 DNA binding 0.6 0.31 -0.3
12 AT3G19740 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.32 -0.32
13 AT3G15060 RAB GTPase homolog A1G RAB GTPase homolog A1G, RAB GTPase
homolog A1G		 -0.6 0.3 -0.31
14 AT3G45000 SNF7 family protein VPS24, VPS24.2 0.6 0.3 -0.31
15 AT4G28150 Protein of unknown function (DUF789) 0.59 0.32 -0.32
16 AT2G14410 pseudogene, hypothetical protein, similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)(SP:Q99323)
{Drosophila melanogaster}		 0.59 0.29 -0.3
17 AT2G29220 Concanavalin A-like lectin protein kinase family protein 0.59 0.31 -0.31
18 AT3G04090 small and basic intrinsic protein 1A SIP1;1, small and basic intrinsic
protein 1A		 -0.58 0.31 -0.32
19 AT5G64300 GTP cyclohydrolase II ARABIDOPSIS THALIANA GTP
CYCLOHYDROLASE II, Arabidopsis
thaliana riboflavin A1, GTP
cyclohydrolase II, RED FLUORESCENT
IN DARKNESS 1, riboflavin A1		 -0.57 0.33 -0.3
20 AT2G23945 Eukaryotic aspartyl protease family protein 0.57 0.29 -0.32
21 AT2G05870 transposable element gene 0.57 0.3 -0.31
22 AT4G36560 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.33 -0.32
23 AT4G03340 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.57 0.3 -0.3
24 AT3G46750 unknown protein; Has 2631 Blast hits to 1984 proteins in
271 species: Archae - 6; Bacteria - 163; Metazoa - 1232;
Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes -
828 (source: NCBI BLink).		 -0.57 0.32 -0.31
25 AT2G06390 transposable element gene 0.56 0.3 -0.33
26 AT1G72460 Leucine-rich repeat protein kinase family protein -0.56 0.31 -0.34
27 AT3G21220 MAP kinase kinase 5 ATMAP2K_ALPHA, ARABIDOPSIS
THALIANA MITOGEN-ACTIVATED PROTEIN
KINASE KINASE 5, ARABIDOPSIS
THALIANA MITOGEN-ACTIVATED PROTEIN
KINASE KINASE 5, MAP2K_A, MAP
KINASE KINASE 5, MAP kinase kinase
5		 -0.56 0.3 -0.33
28 AT3G16600 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.55 0.3 -0.3
29 AT4G13570 histone H2A 4 histone H2A 4 0.55 0.29 -0.31
30 AT5G11130 Exostosin family protein -0.55 0.31 -0.33
31 AT4G27580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, cell wall; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 6 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.54 0.29 -0.3
32 AT3G20970 NFU domain protein 4 ARABIDOPSIS THALIANA NFU DOMAIN
PROTEIN 2, NFU domain protein 4		 -0.54 0.31 -0.32
33 AT2G19410 U-box domain-containing protein kinase family protein -0.54 0.32 -0.33
34 AT1G18130 Class II aaRS and biotin synthetases superfamily protein -0.54 0.33 -0.29
35 AT3G25090 F-box associated ubiquitination effector family protein -0.53 0.31 -0.32
36 AT1G16360 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.53 0.32 -0.31
37 AT4G19220 Tetratricopeptide repeat (TPR)-like superfamily protein -0.53 0.31 -0.32
38 AT4G32375 Pectin lyase-like superfamily protein 0.53 0.33 -0.31
39 AT3G05860 MADS-box transcription factor family protein -0.53 0.31 -0.32
40 AT1G02580 SET domain-containing protein EMBRYO DEFECTIVE 173,
FERTILIZATION INDEPENDENT SEED 1,
MEDEA, SET DOMAIN-CONTAINING
PROTEIN 5		 0.53 0.31 -0.33
41 AT5G64610 histone acetyltransferase of the MYST family 1 histone acetyltransferase of the
MYST family 1		 0.53 0.31 -0.31
42 AT1G66660 Protein with RING/U-box and TRAF-like domains -0.53 0.31 -0.32
43 AT1G60985 SCR-like 6 SCR-like 6 -0.52 0.32 -0.33
44 AT4G17590 CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic
nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis
thaliana protein match is:
S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein (TAIR:AT4G26600.1); Has 459 Blast hits
to 368 proteins in 186 species: Archae - 2; Bacteria - 0;
Metazoa - 137; Fungi - 144; Plants - 100; Viruses - 0;
Other Eukaryotes - 76 (source: NCBI BLink).		 0.52 0.32 -0.31
45 AT5G58280 AP2/B3-like transcriptional factor family protein -0.52 0.35 -0.31
46 AT5G42230 serine carboxypeptidase-like 41 serine carboxypeptidase-like 41 0.52 0.33 -0.32
47 AT3G30800 transposable element gene 0.51 0.28 -0.31
48 AT3G31940 transposable element gene 0.51 0.32 -0.32
49 AT5G30440 transposable element gene 0.51 0.31 -0.31
50 AT1G66770 Nodulin MtN3 family protein AtSWEET6, SWEET6 -0.5 0.33 -0.33
51 AT5G08130 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BIM1 0.5 0.3 -0.31
52 AT3G20850 proline-rich family protein -0.5 0.33 -0.33
53 AT2G17920 nucleic acid binding;zinc ion binding 0.5 0.34 -0.31
54 AT5G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60000.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.5 0.34 -0.33
55 AT4G04070 transposable element gene 0.5 0.29 -0.32
56 AT4G38070 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.49 0.34 -0.31
57 AT5G16560 Homeodomain-like superfamily protein KANADI, KANADI 1 -0.49 0.32 -0.3
58 AT1G68230 Reticulon family protein -0.49 0.33 -0.32
59 AT5G43730 Disease resistance protein (CC-NBS-LRR class) family -0.49 0.3 -0.32
60 AT3G29080 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.49 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
61 C0115 Homoserine D,L-Homoserine Homoserine homoserine biosynthesis,
threonine biosynthesis from homoserine,
methionine biosynthesis II 		-0.62 0.31 -0.32 C0115
62 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.52 0.31 -0.3 C0061