AT3G62310 : -
Query Information
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AGICode AT3G62310
Description RNA helicase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G62310 RNA helicase family protein 1 0.31 -0.31
2 AT5G67240 small RNA degrading nuclease 3 small RNA degrading nuclease 3 0.86 0.32 -0.32
3 AT2G13540 ARM repeat superfamily protein ABA HYPERSENSITIVE 1, ATCBP80,
CAP-BINDING PROTEIN 80, ENSALADA		 0.84 0.3 -0.32
4 AT4G24730 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.83 0.3 -0.3
5 AT1G72320 pumilio 23 pumilio 23, pumilio 23 0.83 0.3 -0.32
6 AT3G56990 embryo sac development arrest 7 embryo sac development arrest 7 0.82 0.31 -0.32
7 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.82 0.31 -0.28
8 AT5G54910 DEA(D/H)-box RNA helicase family protein 0.81 0.32 -0.29
9 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 0.81 0.3 -0.31
10 AT1G26370 RNA helicase family protein 0.8 0.33 -0.32
11 AT2G28600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.3 -0.32
12 AT3G07050 GTP-binding family protein nucleostemin-like 1 0.8 0.29 -0.29
13 AT4G28200 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA
processing; LOCATED IN: intracellular; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT
helix (InterPro:IPR003107), U3 small nucleolar
RNA-associated protein 6 (InterPro:IPR013949); Has 492
Blast hits to 480 proteins in 206 species: Archae - 0;
Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60;
Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).		 0.8 0.32 -0.31
14 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.32 -0.31
15 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.79 0.3 -0.33
16 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 0.79 0.31 -0.32
17 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.79 0.3 -0.3
18 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 0.79 0.31 -0.3
19 AT3G24080 KRR1 family protein 0.79 0.33 -0.31
20 AT3G16810 pumilio 24 pumilio 24, pumilio 24 0.79 0.32 -0.34
21 AT5G16040 Regulator of chromosome condensation (RCC1) family protein 0.78 0.31 -0.31
22 AT3G57150 homologue of NAP57 AtCBF5, AtNAP57, CBF5, homologue
of NAP57		 0.78 0.3 -0.32
23 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.78 0.34 -0.31
24 AT3G52140 tetratricopeptide repeat (TPR)-containing protein 0.78 0.31 -0.32
25 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein 0.78 0.33 -0.31
26 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.78 0.32 -0.32
27 AT1G05060 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.77 0.3 -0.33
28 AT5G36950 DegP protease 10 DegP protease 10 0.77 0.31 -0.32
29 AT4G12750 Homeodomain-like transcriptional regulator 0.77 0.31 -0.33
30 AT1G06380 Ribosomal protein L1p/L10e family 0.77 0.3 -0.3
31 AT5G17930 MIF4G domain-containing protein / MA3 domain-containing
protein		 0.77 0.34 -0.33
32 AT1G16280 RNA helicase 36 Arabidopsis thaliana RNA helicase
36, RNA helicase 36, SLOW WALKER 3		 0.77 0.32 -0.32
33 AT2G22400 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.76 0.33 -0.32
34 AT2G21090 Pentatricopeptide repeat (PPR-like) superfamily protein 0.76 0.32 -0.33
35 AT3G16890 pentatricopeptide (PPR) domain protein 40 pentatricopeptide (PPR) domain
protein 40		 0.76 0.31 -0.34
36 AT1G30240 FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024); Has 165 Blast hits to 164 proteins in
73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.76 0.34 -0.3
37 AT5G19590 Protein of unknown function, DUF538 -0.76 0.34 -0.32
38 AT5G64420 DNA polymerase V family 0.76 0.31 -0.32
39 AT5G57120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleolus;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: LisH
dimerisation motif (InterPro:IPR006594), SRP40, C-terminal
(InterPro:IPR007718); Has 101969 Blast hits to 55488
proteins in 2506 species: Archae - 424; Bacteria - 13843;
Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses -
569; Other Eukaryotes - 34792 (source: NCBI BLink).		 0.76 0.32 -0.33
40 AT5G61940 Ubiquitin carboxyl-terminal hydrolase-related protein 0.75 0.35 -0.33
41 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.75 0.35 -0.3
42 AT2G40600 appr-1-p processing enzyme family protein -0.75 0.3 -0.34
43 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein		 0.75 0.3 -0.33
44 AT2G26200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.3 -0.32
45 AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 0.74 0.32 -0.32
46 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.74 0.31 -0.3
47 AT1G31170 sulfiredoxin SULFIREDOXIN, sulfiredoxin -0.74 0.32 -0.3
48 AT5G17440 LUC7 related protein 0.74 0.3 -0.33
49 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 0.74 0.32 -0.31
50 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.31 -0.32
51 AT5G65900 DEA(D/H)-box RNA helicase family protein 0.73 0.31 -0.32
52 AT4G20410 gamma-soluble NSF attachment protein GAMMA-SOLUBLE NSF ATTACHMENT
PROTEIN, gamma-soluble NSF
attachment protein		 -0.73 0.33 -0.32
53 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 0.73 0.33 -0.31
54 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.73 0.28 -0.35
55 AT1G76120 Pseudouridine synthase family protein 0.73 0.33 -0.29
56 AT1G03830 guanylate-binding family protein 0.73 0.31 -0.31
57 AT1G04945 HIT-type Zinc finger family protein 0.73 0.35 -0.33
58 AT1G35515 high response to osmotic stress 10 high response to osmotic stress
10, MYB8		 -0.73 0.3 -0.31
59 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 -0.73 0.33 -0.3
60 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 -0.73 0.31 -0.33
61 AT5G10960 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.73 0.32 -0.3
62 AT1G11280 S-locus lectin protein kinase family protein 0.73 0.32 -0.31
63 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 0.73 0.3 -0.35
64 AT4G37170 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.31 -0.3
65 AT1G30290 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.33 -0.32
66 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 0.72 0.35 -0.31
67 AT5G02310 proteolysis 6 proteolysis 6 -0.72 0.35 -0.3
68 AT3G43590 zinc knuckle (CCHC-type) family protein 0.72 0.32 -0.33
69 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.72 0.3 -0.31
70 AT1G34160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.32 -0.29
71 AT4G14930 Survival protein SurE-like phosphatase/nucleotidase -0.72 0.31 -0.33
72 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 -0.72 0.31 -0.34
73 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.72 0.33 -0.32
74 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.72 0.31 -0.31
75 AT3G59670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits
to 77 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.71 0.32 -0.31
76 AT3G25890 Integrase-type DNA-binding superfamily protein cytokinin response factor 11 0.71 0.3 -0.35
77 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.71 0.33 -0.32
78 AT5G01230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.71 0.31 -0.29
79 AT2G28590 Protein kinase superfamily protein 0.71 0.31 -0.3
80 AT5G57420 indole-3-acetic acid inducible 33 indole-3-acetic acid inducible 33 0.71 0.32 -0.31
81 AT5G39620 RAB GTPase homolog G1 RAB GTPase homolog G1, RAB GTPase
homolog G1		 0.71 0.3 -0.31
82 AT2G30160 Mitochondrial substrate carrier family protein 0.71 0.33 -0.3
83 AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein 0.71 0.32 -0.31
84 AT1G78620 Protein of unknown function DUF92, transmembrane -0.71 0.32 -0.31
85 AT3G01610 cell division cycle 48C cell division cycle 48C, embryo
defective 1354		 0.7 0.3 -0.32
86 AT4G25770 alpha/beta-Hydrolases superfamily protein -0.7 0.33 -0.32
87 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 0.7 0.32 -0.3
88 AT5G46210 cullin4 ATCUL4, cullin4 0.7 0.31 -0.33
89 AT1G14850 nucleoporin 155 nucleoporin 155 0.7 0.3 -0.32
90 AT1G04900 Protein of unknown function (DUF185) 0.7 0.32 -0.32
91 AT4G19610 nucleotide binding;nucleic acid binding;RNA binding 0.7 0.3 -0.32
92 AT3G10210 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.7 0.31 -0.31
93 AT3G14730 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.3 -0.32
94 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.31 -0.31
95 AT4G11960 PGR5-like B PGR5-like B -0.7 0.3 -0.32
96 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.7 0.32 -0.31
97 AT5G41210 glutathione S-transferase THETA 1 glutathione S-transferase THETA 1,
GST10, glutathione S-transferase
THETA 1		 -0.7 0.33 -0.33
98 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein EMBRYO DEFECTIVE 2777 0.69 0.3 -0.31
99 AT5G67290 FAD-dependent oxidoreductase family protein -0.69 0.3 -0.29
100 AT4G20770 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.32 -0.32
101 AT2G34700 Pollen Ole e 1 allergen and extensin family protein 0.69 0.3 -0.33
102 AT1G78890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.69 0.33 -0.32
103 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 0.69 0.31 -0.33
104 AT5G27840 Calcineurin-like metallo-phosphoesterase superfamily
protein		 TOPP8 -0.69 0.31 -0.33
105 AT4G20820 FAD-binding Berberine family protein -0.69 0.33 -0.33
106 AT1G06630 F-box/RNI-like superfamily protein -0.68 0.32 -0.32
107 AT3G15840 post-illumination chlorophyll fluorescence increase post-illumination chlorophyll
fluorescence increase		 -0.68 0.32 -0.31
108 AT1G66900 alpha/beta-Hydrolases superfamily protein -0.68 0.32 -0.31
109 AT5G66160 receptor homology region transmembrane domain ring H2 motif
protein 1		 ARABIDOPSIS THALIANA RECEPTOR
HOMOLOGY REGION TRANSMEMBRANE
DOMAIN RING H2 MOTIF PROTEIN 1,
receptor homology region
transmembrane domain ring H2 motif
protein 1		 -0.68 0.3 -0.34
110 AT4G13950 ralf-like 31 ralf-like 31 -0.68 0.31 -0.32
111 AT1G30200 F-box family protein -0.68 0.31 -0.33
112 AT5G47420 Tryptophan RNA-binding attenuator protein-like -0.68 0.34 -0.31
113 AT3G47850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 12 growth stages; Has 57 Blast hits to 57 proteins
in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12;
Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7
(source: NCBI BLink).		 -0.68 0.33 -0.31
114 AT5G19430 RING/U-box superfamily protein -0.67 0.33 -0.31
115 AT1G11270 F-box and associated interaction domains-containing protein -0.67 0.32 -0.31
116 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 -0.67 0.3 -0.33
117 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 -0.67 0.31 -0.31
118 AT3G21350 RNA polymerase transcriptional regulation mediator-related MED6 -0.66 0.33 -0.31
119 AT5G40670 PQ-loop repeat family protein / transmembrane family
protein		 -0.66 0.32 -0.32
120 AT5G09630 LisH/CRA/RING-U-box domains-containing protein -0.66 0.31 -0.34
121 AT4G19045 Mob1/phocein family protein -0.66 0.34 -0.32
122 AT4G29420 F-box/RNI-like superfamily protein -0.66 0.32 -0.34
123 AT1G33780 Protein of unknown function (DUF179) -0.66 0.3 -0.32
124 AT3G22940 F-box associated ubiquitination effector family protein -0.66 0.33 -0.33
125 AT3G63080 glutathione peroxidase 5 glutathione peroxidase 5,
glutathione peroxidase 5, maternal
effect embryo arrest 42		 -0.65 0.33 -0.33
126 AT2G19340 Oligosaccharyltransferase complex/magnesium transporter
family protein		 -0.65 0.31 -0.31
127 AT1G13880 ELM2 domain-containing protein -0.65 0.32 -0.31
128 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.31 -0.31
129 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.65 0.31 -0.29
130 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein -0.65 0.31 -0.35
131 AT5G23240 DNAJ heat shock N-terminal domain-containing protein -0.65 0.3 -0.31
132 AT1G70580 alanine-2-oxoglutarate aminotransferase 2 alanine-2-oxoglutarate
aminotransferase 2,
GLUTAMATE:GLYOXYLATE
AMINOTRANSFERASE 2		 -0.65 0.33 -0.32
133 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 -0.65 0.32 -0.3
134 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 -0.64 0.31 -0.33
135 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.64 0.29 -0.31
136 AT1G75280 NmrA-like negative transcriptional regulator family protein -0.64 0.31 -0.3
137 AT4G11400 ARID/BRIGHT DNA-binding domain;ELM2 domain protein -0.64 0.32 -0.34
138 AT4G16770 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.32 -0.3
139 AT1G07640 Dof-type zinc finger DNA-binding family protein OBP2 -0.63 0.32 -0.29
140 AT1G23750 Nucleic acid-binding, OB-fold-like protein -0.63 0.31 -0.33
141 AT2G05850 serine carboxypeptidase-like 38 serine carboxypeptidase-like 38 -0.63 0.31 -0.32
142 AT1G29040 unknown protein; LOCATED IN: chloroplast, vacuole;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Conserved
hypothetical protein CHP02058 (InterPro:IPR011719); Has 344
Blast hits to 344 proteins in 122 species: Archae - 2;
Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32;
Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).		 -0.63 0.31 -0.32
143 AT1G71130 Integrase-type DNA-binding superfamily protein cytokinin response factor 8 -0.63 0.31 -0.34
144 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.32
145 AT4G32560 paramyosin-related -0.62 0.29 -0.31
146 AT2G03160 SKP1-like 19 SKP1-like 19, SKP1-like 19 -0.61 0.31 -0.3
147 AT2G30920 coenzyme Q 3 coenzyme Q 3, COQ3, coenzyme Q 3,
embryo defective 3002		 -0.61 0.31 -0.33
148 AT1G06060 LisH and RanBPM domains containing protein -0.61 0.3 -0.3
149 AT3G50830 cold-regulated 413-plasma membrane 2 ATCOR413-PM2, cold-regulated
413-plasma membrane 2		 -0.61 0.32 -0.29
150 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.29 -0.31
151 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.61 0.3 -0.32
152 AT4G04880 adenosine/AMP deaminase family protein -0.61 0.32 -0.32
153 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.61 0.33 -0.29