AT3G61620 : RRP41
Query Information
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AGICode AT3G61620
Description 3'-5'-exoribonuclease family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G61620 3'-5'-exoribonuclease family protein RRP41 1 0.33 -0.31
2 AT1G04340 HR-like lesion-inducing protein-related 0.9 0.29 -0.31
3 AT2G19730 Ribosomal L28e protein family 0.9 0.31 -0.3
4 AT3G06610 DNA-binding enhancer protein-related 0.89 0.3 -0.31
5 AT1G04190 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 3 0.89 0.31 -0.31
6 AT4G14320 Zinc-binding ribosomal protein family protein 0.89 0.35 -0.32
7 AT3G56340 Ribosomal protein S26e family protein 0.89 0.29 -0.32
8 AT1G04480 Ribosomal protein L14p/L23e family protein 0.88 0.3 -0.3
9 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.88 0.31 -0.29
10 AT1G54690 gamma histone variant H2AX GAMMA H2AX, gamma histone variant
H2AX, H2AXB, histone H2A 3		 0.88 0.31 -0.3
11 AT2G43460 Ribosomal L38e protein family 0.88 0.32 -0.34
12 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.88 0.31 -0.31
13 AT3G07110 Ribosomal protein L13 family protein 0.88 0.32 -0.32
14 AT2G47610 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.88 0.34 -0.33
15 AT2G36620 ribosomal protein L24 ribosomal protein L24 0.88 0.33 -0.32
16 AT1G48830 Ribosomal protein S7e family protein 0.87 0.3 -0.32
17 AT1G34030 Ribosomal protein S13/S18 family 0.87 0.32 -0.33
18 AT3G23390 Zinc-binding ribosomal protein family protein 0.87 0.29 -0.29
19 AT4G29410 Ribosomal L28e protein family 0.87 0.31 -0.33
20 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 0.87 0.31 -0.33
21 AT5G61170 Ribosomal protein S19e family protein 0.87 0.31 -0.31
22 AT4G16720 Ribosomal protein L23/L15e family protein 0.86 0.32 -0.31
23 AT5G19510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.86 0.3 -0.31
24 AT2G36170 Ubiquitin supergroup;Ribosomal protein L40e 0.86 0.32 -0.33
25 AT2G27720 60S acidic ribosomal protein family 0.86 0.33 -0.3
26 AT3G05590 ribosomal protein L18 ribosomal protein L18 0.86 0.32 -0.29
27 AT2G39390 Ribosomal L29 family protein 0.86 0.3 -0.32
28 AT3G60770 Ribosomal protein S13/S15 0.86 0.32 -0.34
29 AT2G20450 Ribosomal protein L14 0.86 0.3 -0.3
30 AT5G47700 60S acidic ribosomal protein family 0.85 0.32 -0.31
31 AT1G75560 zinc knuckle (CCHC-type) family protein 0.85 0.32 -0.32
32 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.85 0.32 -0.32
33 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.85 0.34 -0.33
34 AT4G10450 Ribosomal protein L6 family 0.85 0.3 -0.31
35 AT1G54770 Fcf2 pre-rRNA processing protein 0.84 0.3 -0.34
36 AT3G55280 ribosomal protein L23AB RIBOSOMAL PROTEIN L23A2, ribosomal
protein L23AB		 0.84 0.31 -0.31
37 AT2G45730 eukaryotic initiation factor 3 gamma subunit family protein 0.84 0.34 -0.29
38 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.84 0.31 -0.33
39 AT1G22780 Ribosomal protein S13/S18 family POINTED FIRST LEAVES, POINTED
FIRST LEAVES 1, 40S RIBOSOMAL
PROTEIN S18		 0.84 0.32 -0.3
40 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 0.84 0.31 -0.32
41 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.84 0.31 -0.33
42 AT1G77750 Ribosomal protein S13/S18 family 0.84 0.31 -0.32
43 AT2G44860 Ribosomal protein L24e family protein 0.83 0.3 -0.3
44 AT5G41970 Metal-dependent protein hydrolase 0.83 0.31 -0.33
45 AT1G64090 Reticulan like protein B3 Reticulan like protein B3 0.83 0.3 -0.3
46 AT3G53890 Ribosomal protein S21e 0.83 0.3 -0.28
47 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.83 0.33 -0.31
48 AT2G44120 Ribosomal protein L30/L7 family protein 0.83 0.33 -0.3
49 AT2G45710 Zinc-binding ribosomal protein family protein 0.83 0.33 -0.32
50 AT2G31710 Vacuolar ATPase assembly integral membrane protein
VMA21-like domain		 0.83 0.31 -0.31
51 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.83 0.32 -0.32
52 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.83 0.32 -0.3
53 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.83 0.33 -0.33
54 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.83 0.33 -0.33
55 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.83 0.3 -0.32
56 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.83 0.33 -0.31
57 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.82 0.29 -0.31
58 AT3G49100 Signal recognition particle, SRP9/SRP14 subunit 0.82 0.31 -0.3
59 AT1G69620 ribosomal protein L34 ribosomal protein L34 0.82 0.32 -0.31
60 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.82 0.31 -0.31
61 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.82 0.3 -0.31
62 AT5G58420 Ribosomal protein S4 (RPS4A) family protein 0.82 0.36 -0.34
63 AT1G08230 Transmembrane amino acid transporter family protein ATGAT1, L-GAMMA-AMINOBUTYRIC ACID
TRANSPORTER 1		 -0.82 0.32 -0.34
64 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.82 0.33 -0.29
65 AT2G01640 unknown protein; Has 51 Blast hits to 51 proteins in 21
species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2;
Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 0.82 0.31 -0.3
66 AT5G23900 Ribosomal protein L13e family protein 0.82 0.3 -0.3
67 AT4G34670 Ribosomal protein S3Ae 0.82 0.32 -0.33
68 AT1G44835 YbaK/aminoacyl-tRNA synthetase-associated domain 0.82 0.32 -0.29
69 AT1G03110 Transducin/WD40 repeat-like superfamily protein AtTRM82, tRNA modification 82 0.82 0.32 -0.33
70 AT5G27470 seryl-tRNA synthetase / serine--tRNA ligase 0.82 0.3 -0.32
71 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.81 0.31 -0.31
72 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.81 0.34 -0.33
73 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 0.81 0.32 -0.3
74 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.81 0.32 -0.31
75 AT3G57000 nucleolar essential protein-related 0.81 0.31 -0.32
76 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.81 0.29 -0.32
77 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.81 0.31 -0.33 IDA
78 AT4G38350 Patched family protein -0.81 0.32 -0.3
79 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.81 0.31 -0.3
80 AT1G14980 chaperonin 10 chaperonin 10 0.81 0.31 -0.32
81 AT4G26230 Ribosomal protein L31e family protein 0.81 0.32 -0.29
82 AT5G58030 Transport protein particle (TRAPP) component 0.81 0.31 -0.31
83 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.81 0.33 -0.33
84 AT1G14810 semialdehyde dehydrogenase family protein 0.8 0.29 -0.35
85 AT1G32740 SBP (S-ribonuclease binding protein) family protein -0.8 0.32 -0.31
86 AT2G40420 Transmembrane amino acid transporter family protein -0.8 0.32 -0.31
87 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.8 0.3 -0.31
88 AT3G11250 Ribosomal protein L10 family protein 0.8 0.3 -0.32
89 AT2G31725 Eukaryotic protein of unknown function (DUF842) 0.8 0.3 -0.3
90 AT3G59540 Ribosomal L38e protein family 0.8 0.31 -0.32
91 AT2G47640 Small nuclear ribonucleoprotein family protein 0.8 0.34 -0.34
92 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.8 0.31 -0.31
93 AT3G44590 60S acidic ribosomal protein family 0.8 0.32 -0.3
94 AT3G19360 Zinc finger (CCCH-type) family protein 0.8 0.33 -0.31
95 AT5G23290 prefoldin 5 prefoldin 5 0.8 0.31 -0.32
96 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.8 0.33 -0.32
97 AT5G10010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G64910.1); Has 33260
Blast hits to 16857 proteins in 1270 species: Archae - 88;
Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants -
1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI
BLink).		 0.8 0.31 -0.32
98 AT2G19740 Ribosomal protein L31e family protein 0.8 0.33 -0.29
99 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.8 0.31 -0.33
100 AT3G46040 ribosomal protein S15A D ribosomal protein S15A D 0.8 0.31 -0.32
101 AT5G28520 Mannose-binding lectin superfamily protein -0.79 0.31 -0.32
102 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.79 0.3 -0.3
103 AT4G36210 Protein of unknown function (DUF726) -0.79 0.31 -0.33
104 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.78 0.31 -0.34
105 AT4G19860 alpha/beta-Hydrolases superfamily protein -0.78 0.31 -0.3
106 AT3G24740 Protein of unknown function (DUF1644) -0.78 0.32 -0.3
107 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.78 0.31 -0.31
108 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein -0.77 0.3 -0.29
109 AT3G10550 Myotubularin-like phosphatases II superfamily Arabidopsis thaliana myotubularin
1, myotubularin 1		 -0.77 0.3 -0.31
110 AT3G16940 calmodulin binding;transcription regulators -0.76 0.31 -0.33
111 AT3G26380 Melibiase family protein -0.76 0.31 -0.32
112 AT1G28260 Telomerase activating protein Est1 -0.76 0.32 -0.33
113 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 -0.75 0.33 -0.32
114 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.75 0.33 -0.29
115 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.75 0.31 -0.34
116 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.75 0.33 -0.32
117 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 -0.75 0.3 -0.32
118 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.74 0.32 -0.34
119 AT1G42470 Patched family protein -0.74 0.33 -0.3
120 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A -0.74 0.3 -0.33
121 AT5G65760 Serine carboxypeptidase S28 family protein -0.72 0.32 -0.31
122 AT5G22850 Eukaryotic aspartyl protease family protein -0.72 0.31 -0.32
123 AT4G38060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.34 -0.32
124 AT4G04960 Concanavalin A-like lectin protein kinase family protein -0.72 0.33 -0.3
125 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.72 0.3 -0.3
126 AT1G09910 Rhamnogalacturonate lyase family protein -0.72 0.32 -0.31
127 AT3G07870 F-box and associated interaction domains-containing protein -0.72 0.31 -0.34
128 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.71 0.33 -0.32
129 AT4G33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase
bifunctional enzyme		 LKR, LYSINE-KETOGLUTARATE
REDUCTASE/SACCHAROPINE
DEHYDROGENASE, SACCHAROPINE
DEHYDROGENASE		 -0.71 0.3 -0.33
130 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.71 0.33 -0.3
131 AT3G28270 Protein of unknown function (DUF677) -0.7 0.29 -0.31
132 AT1G27150 Tetratricopeptide repeat (TPR)-like superfamily protein -0.7 0.31 -0.3
133 AT5G05570 transducin family protein / WD-40 repeat family protein -0.7 0.3 -0.31
134 AT5G58160 actin binding -0.7 0.3 -0.31
135 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.7 0.32 -0.34
136 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 -0.7 0.31 -0.3
137 AT1G48840 Plant protein of unknown function (DUF639) -0.7 0.3 -0.32
138 AT3G26000 Ribonuclease inhibitor -0.7 0.31 -0.33
139 AT4G03200 catalytics -0.7 0.33 -0.32
140 AT4G17030 expansin-like B1 AT-EXPR, expansin-like B1,
ATEXPR1, ATHEXP BETA 3.1,
expansin-like B1, EXPR		 -0.7 0.31 -0.32
141 AT2G14520 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.7 0.29 -0.32
142 AT3G07350 Protein of unknown function (DUF506) -0.7 0.33 -0.3
143 AT3G01320 SIN3-like 1 SIN3-like 1 -0.69 0.33 -0.31
144 AT1G30260 BEST Arabidopsis thaliana protein match is:
Galactosyltransferase family protein (TAIR:AT4G21060.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.3 -0.32
145 AT1G15060 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.68 0.32 -0.31
146 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.68 0.32 -0.34
147 AT1G04830 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.68 0.31 -0.31
148 AT1G07080 Thioredoxin superfamily protein -0.68 0.33 -0.33
149 AT2G37650 GRAS family transcription factor -0.68 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
150 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.81 0.49 -0.47 C0123