AT3G60600 : (AT)VAP

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AGICode	AT3G60600
Description	vesicle associated protein

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT3G60600	vesicle associated protein	(AT)VAP, vesicle associated protein, VAP27, VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1	1	0.33	-0.32
2	AT3G46060	RAB GTPase homolog 8A	ARA-3, ARA3, RAB GTPase homolog 8A, ATRABE1C, RAB GTPase homolog 8A, RABE1c	0.75	0.35	-0.31
3	AT4G31720	TBP-associated factor II 15	SALT TOLERANCE DURING GERMINATION 1, TBP-ASSOCIATED FACTOR 10, TBP-associated factor II 15	0.72	0.31	-0.31
4	AT5G18110	novel cap-binding protein	novel cap-binding protein	0.71	0.31	-0.31
5	AT1G17870	ethylene-dependent gravitropism-deficient and yellow-green-like 3	ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3	-0.7	0.31	-0.3
6	AT5G37780	calmodulin 1	ACAM-1, calmodulin 1, TOUCH 1	0.7	0.3	-0.32
7	AT3G05530	regulatory particle triple-A ATPase 5A	ATS6A.2, regulatory particle triple-A ATPase 5A	0.7	0.31	-0.3
8	AT5G41850	alpha/beta-Hydrolases superfamily protein		-0.69	0.3	-0.32
9	AT2G14835	RING/U-box superfamily protein		0.69	0.32	-0.33
10	AT3G04780	Protein of unknown function (DUF1000)		0.69	0.33	-0.33
11	AT3G18940	clast3-related		0.69	0.3	-0.31
12	AT2G28370	Uncharacterised protein family (UPF0497)		0.69	0.34	-0.33
13	AT4G03120	C2H2 and C2HC zinc fingers superfamily protein		0.69	0.32	-0.32
14	AT3G55460	SC35-like splicing factor 30	SC35-like splicing factor 30, SC35-like splicing factor 30	0.69	0.32	-0.31
15	AT3G08870	Concanavalin A-like lectin protein kinase family protein		-0.69	0.3	-0.32
16	AT2G18450	succinate dehydrogenase 1-2	succinate dehydrogenase 1-2	0.68	0.33	-0.3
17	AT1G51160	SNARE-like superfamily protein		0.68	0.32	-0.32
18	AT1G73720	transducin family protein / WD-40 repeat family protein	SUPPRESSORS OF MEC-8 AND UNC-52 1	0.68	0.33	-0.31
19	AT5G14240	Thioredoxin superfamily protein		0.68	0.33	-0.32
20	AT1G09760	U2 small nuclear ribonucleoprotein A	U2 small nuclear ribonucleoprotein A	0.68	0.33	-0.32
21	AT5G24560	phloem protein 2-B12	phloem protein 2-B12, phloem protein 2-B12	-0.68	0.3	-0.32
22	AT1G61710	Cysteine/Histidine-rich C1 domain family protein		-0.67	0.31	-0.31
23	AT2G22270	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39860.2); Has 247 Blast hits to 231 proteins in 42 species: Archae - 0; Bacteria - 17; Metazoa - 14; Fungi - 5; Plants - 145; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).		0.67	0.31	-0.31
24	AT3G42790	alfin-like 3	alfin-like 3	0.67	0.31	-0.33
25	AT3G56080	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		-0.67	0.31	-0.31
26	AT4G21110	G10 family protein		0.67	0.32	-0.31
27	AT3G28540	P-loop containing nucleoside triphosphate hydrolases superfamily protein		-0.67	0.32	-0.32
28	AT3G15040	Protein of unknown function, DUF584		0.67	0.34	-0.32
29	AT3G54170	FKBP12 interacting protein 37	FKBP12 interacting protein 37, FKBP12 interacting protein 37	0.66	0.32	-0.32
30	AT5G20690	Leucine-rich repeat protein kinase family protein		-0.66	0.33	-0.31
31	AT1G26300	BSD domain-containing protein		0.66	0.3	-0.3
32	AT1G73680	alpha dioxygenase	alpha dioxygenase	-0.66	0.32	-0.29
33	AT1G01830	ARM repeat superfamily protein		-0.65	0.32	-0.32
34	AT2G15080	receptor like protein 19	receptor like protein 19, receptor like protein 19	-0.65	0.3	-0.34
35	AT3G16030	lectin protein kinase family protein	CALLUS EXPRESSION OF RBCS 101	-0.65	0.31	-0.33
36	AT4G17510	ubiquitin C-terminal hydrolase 3	ubiquitin C-terminal hydrolase 3	0.64	0.32	-0.32
37	AT2G34610	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30190.1); Has 342 Blast hits to 279 proteins in 74 species: Archae - 0; Bacteria - 7; Metazoa - 76; Fungi - 18; Plants - 51; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).		-0.64	0.29	-0.33
38	AT1G13200	F-box and associated interaction domains-containing protein		-0.64	0.32	-0.33
39	AT4G27690	vacuolar protein sorting 26B	vacuolar protein sorting 26B	0.64	0.3	-0.29
40	AT1G52740	histone H2A protein 9	histone H2A protein 9	0.64	0.33	-0.31
41	AT3G60260	ELMO/CED-12 family protein		0.64	0.29	-0.31
42	AT5G11280	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		0.64	0.31	-0.33
43	ATCG00080	photosystem II reaction center protein I	photosystem II reaction center protein I	-0.64	0.32	-0.31
44	AT2G34020	Calcium-binding EF-hand family protein		0.64	0.32	-0.31
45	AT1G70250	receptor serine/threonine kinase, putative		-0.63	0.3	-0.33
46	AT1G17010	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		-0.63	0.35	-0.29
47	AT2G44880	Pentatricopeptide repeat (PPR-like) superfamily protein		0.63	0.32	-0.32
48	AT4G04840	methionine sulfoxide reductase B6	methionine sulfoxide reductase B6, methionine sulfoxide reductase B6	0.63	0.32	-0.31
49	AT5G01550	lectin receptor kinase a4.1	lectin receptor kinase a4.1	-0.63	0.32	-0.33
50	AT3G17090	Protein phosphatase 2C family protein		0.63	0.33	-0.31
51	AT2G40620	Basic-leucine zipper (bZIP) transcription factor family protein		0.62	0.32	-0.3
52	AT4G17245	RING/U-box superfamily protein		0.62	0.31	-0.31
53	AT1G31240	Bromodomain transcription factor		0.62	0.33	-0.32
54	AT1G24010	Polyketide cyclase/dehydrase and lipid transport superfamily protein		-0.62	0.34	-0.32
55	AT5G44710	CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		0.62	0.32	-0.3
56	AT1G12280	LRR and NB-ARC domains-containing disease resistance protein		-0.62	0.34	-0.31
57	AT1G21050	Protein of unknown function, DUF617		0.62	0.34	-0.29
58	AT3G43100	transposable element gene		-0.61	0.3	-0.31
59	AT4G13450	Adenine nucleotide alpha hydrolases-like superfamily protein		-0.61	0.34	-0.33
60	AT1G28375	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.61	0.31	-0.29
61	AT1G09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein		0.61	0.31	-0.31
62	AT2G10020	unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		0.61	0.32	-0.33
63	AT4G13390	Proline-rich extensin-like family protein	extensin 12	0.6	0.32	-0.3
64	AT3G12530	PSF2	PSF2	0.6	0.33	-0.32
65	AT4G09830	Uncharacterised conserved protein UCP009193		0.6	0.33	-0.3
66	AT2G32290	beta-amylase 6	beta-amylase 6, BETA-AMYLASE 5	-0.6	0.32	-0.3
67	AT2G42870	phy rapidly regulated 1	HELIX-LOOP-HELIX 1, PHY RAPIDLY REGULATED 1	0.6	0.29	-0.31
68	AT2G37120	S1FA-like DNA-binding protein		0.6	0.3	-0.33
69	AT4G26260	myo-inositol oxygenase 4	myo-inositol oxygenase 4	0.6	0.29	-0.33
70	AT2G20840	Secretory carrier membrane protein (SCAMP) family protein		0.6	0.3	-0.31
71	AT5G01270	carboxyl-terminal domain (ctd) phosphatase-like 2	ATCPL2, carboxyl-terminal domain (ctd) phosphatase-like 2	-0.6	0.32	-0.33
72	AT2G17880	Chaperone DnaJ-domain superfamily protein		0.6	0.31	-0.31
73	AT2G25800	Protein of unknown function (DUF810)		0.6	0.31	-0.31
74	AT1G42700	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: nucleus; BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.6	0.31	-0.31
75	AT4G26090	NB-ARC domain-containing disease resistance protein	RESISTANT TO P. SYRINGAE 2	-0.6	0.32	-0.32
76	AT1G71697	choline kinase 1	choline kinase 1, CHOLINE KINASE, choline kinase 1	0.6	0.3	-0.32
77	AT3G25170	ralf-like 26	ralf-like 26	-0.59	0.31	-0.31
78	AT5G34940	glucuronidase 3	glucuronidase 3, glucuronidase 3	-0.59	0.32	-0.32
79	AT5G45090	phloem protein 2-A7	phloem protein 2-A7, phloem protein 2-A7	-0.59	0.33	-0.3
80	AT1G36020	BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.59	0.34	-0.31
81	AT5G53550	YELLOW STRIPE like 3	YELLOW STRIPE LIKE 3, YELLOW STRIPE like 3	-0.59	0.31	-0.31
82	AT1G47280	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.59	0.31	-0.3
83	AT2G39710	Eukaryotic aspartyl protease family protein		-0.59	0.32	-0.29
84	AT5G58830	Subtilisin-like serine endopeptidase family protein		-0.58	0.31	-0.33
85	AT5G39640	Putative endonuclease or glycosyl hydrolase		-0.57	0.31	-0.34
86	AT2G10880	transposable element gene		-0.57	0.31	-0.31
87	AT1G63190	Cystatin/monellin superfamily protein		-0.57	0.31	-0.3
88	ATCG00070	photosystem II reaction center protein K precursor	photosystem II reaction center protein K precursor	-0.56	0.33	-0.33
89	AT3G62490	transposable element gene		-0.56	0.34	-0.33
90	AT4G19620	unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.56	0.3	-0.31
91	AT1G28590	GDSL-like Lipase/Acylhydrolase superfamily protein		-0.56	0.32	-0.32
92	AT2G42370	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).		-0.55	0.34	-0.32
93	AT2G29110	glutamate receptor 2.8	glutamate receptor 2.8, GLR2.8, glutamate receptor 2.8	-0.54	0.32	-0.31

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
94	C0136	Lactic acid	D,L-Lactic acid	Lactate	pyruvate fermentation to lactate	0.79	0.45	-0.46
95	C0105	Glutathione disulfide	-	Glutathione disulfide	sulfate reduction II (assimilatory), selenate reduction, glutathione redox reactions I, ascorbate glutathione cycle, glutathione redox reactions II	-0.75	0.44	-0.46
96	C0228	Ribose-5-phosphate	D-Ribose-5-phosphate	D-Ribose-5-phosphate	PRPP biosynthesis I, Calvin-Benson-Bassham cycle, trans-zeatin biosynthesis, pentose phosphate pathway (non-oxidative branch), pyridine nucleotide cycling (plants), Rubisco shunt, ribose degradation, pyridoxal 5'-phosphate biosynthesis II	0.7	0.42	-0.44
97	C0138	Linarin	-	-	-	0.65	0.42	-0.44

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