AT3G60600 : (AT)VAP
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AGICode AT3G60600
Description vesicle associated protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G60600 vesicle associated protein (AT)VAP, vesicle associated
protein, VAP27,
VAMP/SYNAPTOBREVIN-ASSOCIATED
PROTEIN 27-1
1 0.33 -0.32
2 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c
0.75 0.35 -0.31
3 AT4G31720 TBP-associated factor II 15 SALT TOLERANCE DURING GERMINATION
1, TBP-ASSOCIATED FACTOR 10,
TBP-associated factor II 15
0.72 0.31 -0.31
4 AT5G18110 novel cap-binding protein novel cap-binding protein 0.71 0.31 -0.31
5 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3
-0.7 0.31 -0.3
6 AT5G37780 calmodulin 1 ACAM-1, calmodulin 1, TOUCH 1 0.7 0.3 -0.32
7 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A
0.7 0.31 -0.3
8 AT5G41850 alpha/beta-Hydrolases superfamily protein -0.69 0.3 -0.32
9 AT2G14835 RING/U-box superfamily protein 0.69 0.32 -0.33
10 AT3G04780 Protein of unknown function (DUF1000) 0.69 0.33 -0.33
11 AT3G18940 clast3-related 0.69 0.3 -0.31
12 AT2G28370 Uncharacterised protein family (UPF0497) 0.69 0.34 -0.33
13 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein 0.69 0.32 -0.32
14 AT3G55460 SC35-like splicing factor 30 SC35-like splicing factor 30,
SC35-like splicing factor 30
0.69 0.32 -0.31
15 AT3G08870 Concanavalin A-like lectin protein kinase family protein -0.69 0.3 -0.32
16 AT2G18450 succinate dehydrogenase 1-2 succinate dehydrogenase 1-2 0.68 0.33 -0.3
17 AT1G51160 SNARE-like superfamily protein 0.68 0.32 -0.32
18 AT1G73720 transducin family protein / WD-40 repeat family protein SUPPRESSORS OF MEC-8 AND UNC-52 1 0.68 0.33 -0.31
19 AT5G14240 Thioredoxin superfamily protein 0.68 0.33 -0.32
20 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A
0.68 0.33 -0.32
21 AT5G24560 phloem protein 2-B12 phloem protein 2-B12, phloem
protein 2-B12
-0.68 0.3 -0.32
22 AT1G61710 Cysteine/Histidine-rich C1 domain family protein -0.67 0.31 -0.31
23 AT2G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G39860.2); Has 247 Blast hits
to 231 proteins in 42 species: Archae - 0; Bacteria - 17;
Metazoa - 14; Fungi - 5; Plants - 145; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).
0.67 0.31 -0.31
24 AT3G42790 alfin-like 3 alfin-like 3 0.67 0.31 -0.33
25 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
-0.67 0.31 -0.31
26 AT4G21110 G10 family protein 0.67 0.32 -0.31
27 AT3G28540 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
-0.67 0.32 -0.32
28 AT3G15040 Protein of unknown function, DUF584 0.67 0.34 -0.32
29 AT3G54170 FKBP12 interacting protein 37 FKBP12 interacting protein 37,
FKBP12 interacting protein 37
0.66 0.32 -0.32
30 AT5G20690 Leucine-rich repeat protein kinase family protein -0.66 0.33 -0.31
31 AT1G26300 BSD domain-containing protein 0.66 0.3 -0.3
32 AT1G73680 alpha dioxygenase alpha dioxygenase -0.66 0.32 -0.29
33 AT1G01830 ARM repeat superfamily protein -0.65 0.32 -0.32
34 AT2G15080 receptor like protein 19 receptor like protein 19, receptor
like protein 19
-0.65 0.3 -0.34
35 AT3G16030 lectin protein kinase family protein CALLUS EXPRESSION OF RBCS 101 -0.65 0.31 -0.33
36 AT4G17510 ubiquitin C-terminal hydrolase 3 ubiquitin C-terminal hydrolase 3 0.64 0.32 -0.32
37 AT2G34610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G30190.1); Has 342 Blast hits
to 279 proteins in 74 species: Archae - 0; Bacteria - 7;
Metazoa - 76; Fungi - 18; Plants - 51; Viruses - 0; Other
Eukaryotes - 190 (source: NCBI BLink).
-0.64 0.29 -0.33
38 AT1G13200 F-box and associated interaction domains-containing protein -0.64 0.32 -0.33
39 AT4G27690 vacuolar protein sorting 26B vacuolar protein sorting 26B 0.64 0.3 -0.29
40 AT1G52740 histone H2A protein 9 histone H2A protein 9 0.64 0.33 -0.31
41 AT3G60260 ELMO/CED-12 family protein 0.64 0.29 -0.31
42 AT5G11280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
0.64 0.31 -0.33
43 ATCG00080 photosystem II reaction center protein I photosystem II reaction center
protein I
-0.64 0.32 -0.31
44 AT2G34020 Calcium-binding EF-hand family protein 0.64 0.32 -0.31
45 AT1G70250 receptor serine/threonine kinase, putative -0.63 0.3 -0.33
46 AT1G17010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
-0.63 0.35 -0.29
47 AT2G44880 Pentatricopeptide repeat (PPR-like) superfamily protein 0.63 0.32 -0.32
48 AT4G04840 methionine sulfoxide reductase B6 methionine sulfoxide reductase B6,
methionine sulfoxide reductase B6
0.63 0.32 -0.31
49 AT5G01550 lectin receptor kinase a4.1 lectin receptor kinase a4.1 -0.63 0.32 -0.33
50 AT3G17090 Protein phosphatase 2C family protein 0.63 0.33 -0.31
51 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein
0.62 0.32 -0.3
52 AT4G17245 RING/U-box superfamily protein 0.62 0.31 -0.31
53 AT1G31240 Bromodomain transcription factor 0.62 0.33 -0.32
54 AT1G24010 Polyketide cyclase/dehydrase and lipid transport
superfamily protein
-0.62 0.34 -0.32
55 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).
0.62 0.32 -0.3
56 AT1G12280 LRR and NB-ARC domains-containing disease resistance
protein
-0.62 0.34 -0.31
57 AT1G21050 Protein of unknown function, DUF617 0.62 0.34 -0.29
58 AT3G43100 transposable element gene -0.61 0.3 -0.31
59 AT4G13450 Adenine nucleotide alpha hydrolases-like superfamily
protein
-0.61 0.34 -0.33
60 AT1G28375 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, leaf whorl,
sepal, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.61 0.31 -0.29
61 AT1G09150 pseudouridine synthase and archaeosine transglycosylase
(PUA) domain-containing protein
0.61 0.31 -0.31
62 AT2G10020 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
0.61 0.32 -0.33
63 AT4G13390 Proline-rich extensin-like family protein extensin 12 0.6 0.32 -0.3
64 AT3G12530 PSF2 PSF2 0.6 0.33 -0.32
65 AT4G09830 Uncharacterised conserved protein UCP009193 0.6 0.33 -0.3
66 AT2G32290 beta-amylase 6 beta-amylase 6, BETA-AMYLASE 5 -0.6 0.32 -0.3
67 AT2G42870 phy rapidly regulated 1 HELIX-LOOP-HELIX 1, PHY RAPIDLY
REGULATED 1
0.6 0.29 -0.31
68 AT2G37120 S1FA-like DNA-binding protein 0.6 0.3 -0.33
69 AT4G26260 myo-inositol oxygenase 4 myo-inositol oxygenase 4 0.6 0.29 -0.33
70 AT2G20840 Secretory carrier membrane protein (SCAMP) family protein 0.6 0.3 -0.31
71 AT5G01270 carboxyl-terminal domain (ctd) phosphatase-like 2 ATCPL2, carboxyl-terminal domain
(ctd) phosphatase-like 2
-0.6 0.32 -0.33
72 AT2G17880 Chaperone DnaJ-domain superfamily protein 0.6 0.31 -0.31
73 AT2G25800 Protein of unknown function (DUF810) 0.6 0.31 -0.31
74 AT1G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to cold; LOCATED IN: nucleus; BEST Arabidopsis
thaliana protein match is: Plant transposase (Ptta/En/Spm
family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10
proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
-0.6 0.31 -0.31
75 AT4G26090 NB-ARC domain-containing disease resistance protein RESISTANT TO P. SYRINGAE 2 -0.6 0.32 -0.32
76 AT1G71697 choline kinase 1 choline kinase 1, CHOLINE KINASE,
choline kinase 1
0.6 0.3 -0.32
77 AT3G25170 ralf-like 26 ralf-like 26 -0.59 0.31 -0.31
78 AT5G34940 glucuronidase 3 glucuronidase 3, glucuronidase 3 -0.59 0.32 -0.32
79 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7
-0.59 0.33 -0.3
80 AT1G36020 BEST Arabidopsis thaliana protein match is: DEAD/DEAH box
RNA helicase family protein (TAIR:AT1G35530.1); Has 18
Blast hits to 18 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).
-0.59 0.34 -0.31
81 AT5G53550 YELLOW STRIPE like 3 YELLOW STRIPE LIKE 3, YELLOW
STRIPE like 3
-0.59 0.31 -0.31
82 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
-0.59 0.31 -0.3
83 AT2G39710 Eukaryotic aspartyl protease family protein -0.59 0.32 -0.29
84 AT5G58830 Subtilisin-like serine endopeptidase family protein -0.58 0.31 -0.33
85 AT5G39640 Putative endonuclease or glycosyl hydrolase -0.57 0.31 -0.34
86 AT2G10880 transposable element gene -0.57 0.31 -0.31
87 AT1G63190 Cystatin/monellin superfamily protein -0.57 0.31 -0.3
88 ATCG00070 photosystem II reaction center protein K precursor photosystem II reaction center
protein K precursor
-0.56 0.33 -0.33
89 AT3G62490 transposable element gene -0.56 0.34 -0.33
90 AT4G19620 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
-0.56 0.3 -0.31
91 AT1G28590 GDSL-like Lipase/Acylhydrolase superfamily protein -0.56 0.32 -0.32
92 AT2G42370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits
to 191 proteins in 60 species: Archae - 3; Bacteria - 23;
Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other
Eukaryotes - 64 (source: NCBI BLink).
-0.55 0.34 -0.32
93 AT2G29110 glutamate receptor 2.8 glutamate receptor 2.8, GLR2.8,
glutamate receptor 2.8
-0.54 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
94 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate 0.79 0.45 -0.46 C0136
95 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II
-0.75 0.44 -0.46 C0105
96 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II
0.7 0.42 -0.44 C0228
97 C0138 Linarin - - - 0.65 0.42 -0.44