AT3G61240 : -
Query Information
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AGICode AT3G61240
Description DEA(D/H)-box RNA helicase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G61240 DEA(D/H)-box RNA helicase family protein 1 0.31 -0.32
2 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.85 0.3 -0.31
3 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.31 -0.3
4 AT2G21390 Coatomer, alpha subunit 0.85 0.32 -0.3
5 AT5G05210 Surfeit locus protein 6 0.82 0.31 -0.31
6 AT5G64420 DNA polymerase V family 0.82 0.28 -0.3
7 AT3G54980 Pentatricopeptide repeat (PPR) superfamily protein 0.81 0.3 -0.3
8 AT1G71850 Ubiquitin carboxyl-terminal hydrolase family protein 0.81 0.32 -0.32
9 AT1G13160 ARM repeat superfamily protein 0.81 0.3 -0.33
10 AT4G25730 FtsJ-like methyltransferase family protein 0.81 0.3 -0.3
11 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 0.81 0.31 -0.31
12 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.81 0.32 -0.32
13 AT1G69250 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.81 0.3 -0.32
14 AT3G26370 O-fucosyltransferase family protein 0.8 0.32 -0.34
15 AT4G23540 ARM repeat superfamily protein 0.8 0.3 -0.3
16 AT5G20600 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: preribosome, small subunit
precursor; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).		 0.8 0.3 -0.34
17 AT1G06720 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.33 -0.32
18 AT5G22320 Leucine-rich repeat (LRR) family protein 0.79 0.34 -0.34
19 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 0.79 0.29 -0.32
20 AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein -0.79 0.3 -0.3
21 AT4G39260 cold, circadian rhythm, and RNA binding 1 GLYCINE-RICH PROTEIN 8, cold,
circadian rhythm, and RNA binding
1, glycine-rich RNA-binding
protein 8, GRP8		 0.79 0.32 -0.32
22 AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.78 0.33 -0.33
23 AT1G06900 Insulinase (Peptidase family M16) family protein 0.78 0.31 -0.31
24 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 0.78 0.33 -0.34
25 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein 0.78 0.32 -0.33
26 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.77 0.3 -0.32
27 AT3G15000 cobalt ion binding 0.77 0.31 -0.3
28 AT5G10840 Endomembrane protein 70 protein family 0.77 0.33 -0.3
29 AT5G59980 Polymerase/histidinol phosphatase-like 0.77 0.31 -0.33
30 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.31 -0.34
31 AT1G04510 MOS4-associated complex 3A MOS4-associated complex 3A 0.77 0.32 -0.3
32 AT4G00740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 QUASIMODO 3 0.76 0.3 -0.32
33 AT1G10270 glutamine-rich protein 23 glutamine-rich protein 23 0.76 0.33 -0.33
34 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.76 0.31 -0.32
35 AT5G37670 HSP20-like chaperones superfamily protein -0.76 0.32 -0.33
36 AT1G19520 pentatricopeptide (PPR) repeat-containing protein NUCLEAR FUSION DEFECTIVE 5 0.76 0.31 -0.32
37 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1		 0.76 0.33 -0.27
38 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.76 0.3 -0.33
39 AT5G60570 Galactose oxidase/kelch repeat superfamily protein 0.76 0.31 -0.31
40 AT3G21540 transducin family protein / WD-40 repeat family protein 0.76 0.31 -0.31
41 AT3G25230 rotamase FKBP 1 ATFKBP62, FK506 BINDING PROTEIN
62, rotamase FKBP 1		 0.75 0.31 -0.33
42 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.75 0.31 -0.3
43 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.75 0.34 -0.31
44 AT3G12050 Aha1 domain-containing protein 0.74 0.3 -0.32
45 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 -0.74 0.33 -0.32
46 AT1G10290 dynamin-like protein 6 dynamin-like protein 6,
DYNAMIN-RELATED PROTEIN 2A		 0.74 0.33 -0.31
47 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28		 -0.74 0.32 -0.32
48 AT5G16930 AAA-type ATPase family protein 0.74 0.32 -0.33
49 AT5G16750 Transducin family protein / WD-40 repeat family protein TORMOZEMBRYO DEFECTIVE 0.74 0.31 -0.3
50 AT2G17250 CCAAT-binding factor EMBRYO DEFECTIVE 2762 0.74 0.34 -0.3
51 AT3G57890 Tubulin binding cofactor C domain-containing protein 0.74 0.3 -0.33
52 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.74 0.34 -0.31
53 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.74 0.32 -0.31
54 AT3G07060 NHL domain-containing protein embryo defective 1974 0.74 0.31 -0.34
55 AT3G16230 Predicted eukaryotic LigT -0.73 0.3 -0.31
56 AT5G09840 Putative endonuclease or glycosyl hydrolase 0.73 0.32 -0.33
57 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.73 0.31 -0.31
58 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 0.73 0.31 -0.32
59 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.73 0.31 -0.31
60 AT1G08410 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.73 0.31 -0.34
61 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.73 0.28 -0.32
62 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.31 -0.35
63 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.73 0.31 -0.32
64 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.72 0.29 -0.35
65 AT1G22730 MA3 domain-containing protein 0.72 0.3 -0.32
66 AT4G02120 CTP synthase family protein -0.72 0.33 -0.33
67 AT3G53950 glyoxal oxidase-related protein -0.72 0.32 -0.33
68 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.72 0.31 -0.31
69 AT1G35220 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 313
Blast hits to 185 proteins in 75 species: Archae - 0;
Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).		 0.72 0.33 -0.33
70 AT3G59020 ARM repeat superfamily protein 0.72 0.3 -0.31
71 AT2G34970 Trimeric LpxA-like enzyme 0.72 0.31 -0.34
72 AT4G37130 hydroxyproline-rich glycoprotein family protein 0.72 0.31 -0.34
73 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.33 -0.3
74 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.72 0.32 -0.3
75 AT5G42420 Nucleotide-sugar transporter family protein 0.72 0.31 -0.31
76 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.72 0.29 -0.31
77 AT5G46920 Intron maturase, type II family protein 0.72 0.34 -0.31
78 AT1G70590 F-box family protein -0.71 0.33 -0.31
79 AT5G58120 Disease resistance protein (TIR-NBS-LRR class) family -0.71 0.32 -0.31
80 AT2G25590 Plant Tudor-like protein -0.7 0.31 -0.33
81 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.32 -0.32
82 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.7 0.34 -0.35
83 AT1G30260 BEST Arabidopsis thaliana protein match is:
Galactosyltransferase family protein (TAIR:AT4G21060.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.33 -0.3
84 AT1G78200 Protein phosphatase 2C family protein -0.7 0.31 -0.32
85 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.32
86 AT5G62470 myb domain protein 96 MYB DOMAIN PROTEIN 96, myb domain
protein 96, MYBCOV1		 -0.69 0.31 -0.3
87 AT5G54980 Uncharacterised protein family (UPF0497) -0.69 0.33 -0.31
88 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.69 0.31 -0.34
89 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.69 0.32 -0.33
90 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.68 0.33 -0.29
91 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.68 0.31 -0.31
92 AT1G53170 ethylene response factor 8 ATERF-8, ETHYLENE RESPONSE ELEMENT
BINDING FACTOR 4, ethylene
response factor 8		 -0.67 0.31 -0.32
93 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.67 0.31 -0.3
94 AT5G47720 Thiolase family protein -0.66 0.34 -0.32
95 AT2G39000 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.66 0.3 -0.33
96 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 -0.65 0.3 -0.32
97 AT1G63740 Disease resistance protein (TIR-NBS-LRR class) family -0.65 0.29 -0.31
98 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.65 0.3 -0.32
99 AT5G45630 Protein of unknown function, DUF584 -0.64 0.33 -0.29
100 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.64 0.3 -0.33
101 AT4G01280 Homeodomain-like superfamily protein -0.64 0.31 -0.33
102 AT3G44280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.32 -0.32
103 AT1G16730 unknown protein 6 unknown protein 6 -0.64 0.31 -0.3
104 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 -0.63 0.33 -0.29
105 AT4G31270 sequence-specific DNA binding transcription factors -0.63 0.32 -0.32
106 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.63 0.32 -0.31
107 AT1G60260 beta glucosidase 5 beta glucosidase 5 -0.63 0.33 -0.31
108 AT5G66670 Protein of unknown function (DUF677) -0.62 0.31 -0.33
109 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.62 0.33 -0.33
110 AT2G45740 peroxin 11D peroxin 11D -0.62 0.29 -0.31
111 AT4G13150 unknown protein; Has 83 Blast hits to 82 proteins in 37
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.61 0.32 -0.32
112 AT3G23200 Uncharacterised protein family (UPF0497) -0.61 0.32 -0.3
113 AT4G01510 Arv1-like protein ARV2 -0.61 0.32 -0.29
114 AT1G53060 Legume lectin family protein -0.61 0.3 -0.31
115 AT5G24750 UDP-Glycosyltransferase superfamily protein -0.61 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0169 MST_2105.7 - - - -0.73 0.42 -0.42
117 C0176 MST_2406.9 - - - -0.71 0.46 -0.46