AT3G61350 : SKP1 interacting partner 4
Query Information
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AGICode AT3G61350
Description SKP1 interacting partner 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G61350 SKP1 interacting partner 4 SKP1 interacting partner 4 1 0.31 -0.29
2 AT1G54210 Ubiquitin-like superfamily protein AUTOPHAGY 12, ATATG12, AUTOPHAGY
12 A		 0.82 0.3 -0.32
3 AT3G14070 cation exchanger 9 CATION CALCIUM EXCHANGER 3, cation
exchanger 9, CATION CALCIUM
EXCHANGER 3		 0.81 0.32 -0.33
4 AT2G42410 zinc finger protein 11 ZINC FINGER PROTEIN 11, zinc
finger protein 11		 -0.78 0.31 -0.31
5 AT3G10210 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 0.78 0.33 -0.32
6 AT1G50180 NB-ARC domain-containing disease resistance protein -0.77 0.31 -0.31
7 AT2G20740 Tetraspanin family protein 0.77 0.32 -0.29
8 AT1G76660 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in
60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi -
22; Plants - 125; Viruses - 4; Other Eukaryotes - 139
(source: NCBI BLink).		 0.76 0.31 -0.31
9 AT1G36980 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0220
(InterPro:IPR007919); Has 424 Blast hits to 424 proteins in
159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi
- 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 0.76 0.31 -0.3
10 AT1G51270 structural molecules;transmembrane receptors;structural
molecules		 -0.75 0.31 -0.31
11 AT1G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits
to 71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.32 -0.32
12 AT2G19420 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.74 0.29 -0.29
13 AT3G10620 nudix hydrolase homolog 26 nudix hydrolase homolog 26, nudix
hydrolase homolog 26		 0.73 0.31 -0.29
14 AT2G27120 DNA polymerase epsilon catalytic subunit POL2B, TILTED 2 -0.73 0.3 -0.33
15 AT5G08440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast
hits to 139 proteins in 35 species: Archae - 0; Bacteria -
9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 -0.73 0.31 -0.33
16 AT1G35995 transposable element gene 0.72 0.31 -0.29
17 AT5G54260 DNA repair and meiosis protein (Mre11) ARABIDOPSIS MEIOTIC RECOMBINATION
11, MEIOTIC RECOMBINATION 11		 -0.72 0.33 -0.31
18 AT5G06140 sorting nexin 1 ARABIDOPSIS THALIANA SORTING NEXIN
1, sorting nexin 1		 0.72 0.33 -0.32
19 AT4G18530 Protein of unknown function (DUF707) 0.72 0.32 -0.32
20 AT2G19350 Eukaryotic protein of unknown function (DUF872) 0.71 0.32 -0.31
21 AT3G20770 Ethylene insensitive 3 family protein AtEIN3, ETHYLENE-INSENSITIVE3 0.71 0.32 -0.31
22 AT3G13430 RING/U-box superfamily protein 0.71 0.31 -0.33
23 AT3G52090 DNA-directed RNA polymerase, RBP11-like ATRPB13.6, NRPB11, NRPD11, NRPE11 0.71 0.32 -0.31
24 AT1G08340 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 0.71 0.29 -0.32
25 AT2G12880 Zinc knuckle (CCHC-type) family protein 0.7 0.3 -0.36
26 AT3G03330 NAD(P)-binding Rossmann-fold superfamily protein 0.7 0.31 -0.29
27 ATMG00320 hypothetical protein ORF127 0.7 0.31 -0.32
28 AT4G27550 trehalose-6-phosphatase synthase S4 ARABIDOPSIS THALIANA TREHALOSE
PHOSPHATASE/SYNTHASE 4,
trehalose-6-phosphatase synthase
S4		 -0.7 0.32 -0.33
29 AT5G61500 autophagy 3 (APG3) ATATG3, ATG3 0.7 0.31 -0.32
30 AT3G02555 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits
to 130 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.33 -0.31
31 AT3G49480 Protein with RNI-like/FBD-like domains 0.7 0.32 -0.29
32 AT1G67770 terminal EAR1-like 2 terminal EAR1-like 2 -0.7 0.3 -0.31
33 AT3G27000 actin related protein 2 actin related protein 2, ACTIN
RELATED PROTEIN 2, WURM		 0.7 0.32 -0.33
34 AT1G11360 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.7 0.35 -0.29
35 AT1G23070 Protein of unknown function (DUF300) 0.69 0.3 -0.32
36 AT1G73640 RAB GTPase homolog A6A RAB GTPase homolog A6A, RAB GTPase
homolog A6A		 -0.69 0.31 -0.32
37 AT1G23910 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.69 0.3 -0.3
38 AT3G04280 response regulator 22 response regulator 22, response
regulator 22		 0.69 0.34 -0.32
39 AT4G37840 hexokinase-like 3 hexokinase-like 3 -0.69 0.35 -0.31
40 AT3G49740 Tetratricopeptide repeat (TPR)-like superfamily protein -0.69 0.31 -0.32
41 AT5G43610 sucrose-proton symporter 6 sucrose-proton symporter 6,
sucrose-proton symporter 6		 -0.69 0.3 -0.3
42 AT1G64410 transposable element gene -0.68 0.32 -0.33
43 AT1G72180 Leucine-rich receptor-like protein kinase family protein 0.68 0.31 -0.3
44 AT5G28620 protein kinase C-related 0.68 0.33 -0.32
45 AT1G52820 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.32 -0.32
46 AT5G11290 Plant protein of unknown function (DUF247) -0.68 0.3 -0.32
47 AT4G39100 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 short life 0.68 0.33 -0.34
48 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.68 0.32 -0.33
49 AT3G51500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.68 0.33 -0.31
50 AT3G49510 F-box family protein 0.68 0.32 -0.32
51 AT5G14980 alpha/beta-Hydrolases superfamily protein -0.68 0.32 -0.33
52 AT5G08139 RING/U-box superfamily protein 0.68 0.31 -0.31
53 AT3G43320 transposable element gene 0.68 0.3 -0.31
54 AT1G03170 Protein of unknown function (DUF3049) FANTASTIC FOUR 2 -0.68 0.32 -0.32
55 AT1G56090 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.32 -0.31
56 AT2G33820 Mitochondrial substrate carrier family protein ATMBAC1, MBAC1 -0.67 0.32 -0.31
57 AT2G26630 transposable element gene -0.67 0.34 -0.32
58 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 -0.67 0.33 -0.31
59 AT3G20080 cytochrome P450, family 705, subfamily A, polypeptide 15 cytochrome P450, family 705,
subfamily A, polypeptide 15		 0.67 0.33 -0.31
60 AT4G18850 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.3 -0.3
61 AT1G26920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G69760.1); Has 47 Blast hits
to 47 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 7; Plants - 34; Viruses - 0; Other
Eukaryotes - 6 (source: NCBI BLink).		 0.67 0.3 -0.3
62 AT3G53360 Tetratricopeptide repeat (TPR)-like superfamily protein -0.67 0.31 -0.3
63 AT2G16190 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G49330.1); Has 77 Blast hits to 77 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13;
Plants - 56; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.67 0.32 -0.3
64 AT5G06710 homeobox from Arabidopsis thaliana homeobox from Arabidopsis thaliana -0.67 0.33 -0.32
65 AT1G64930 cytochrome P450, family 87, subfamily A, polypeptide 7 cytochrome P450, family 87,
subfamily A, polypeptide 7		 0.67 0.33 -0.32
66 AT3G22220 hAT transposon superfamily 0.66 0.32 -0.34
67 AT1G74080 myb domain protein 122 MYB DOMAIN PROTEIN 122, myb domain
protein 122		 0.66 0.32 -0.32
68 AT3G51520 diacylglycerol acyltransferase family 0.66 0.33 -0.32
69 AT1G07230 non-specific phospholipase C1 non-specific phospholipase C1 0.66 0.32 -0.33
70 AT3G05540 Methionine sulfoxide reductase (MSS4-like) family protein 0.66 0.32 -0.32
71 AT1G53840 pectin methylesterase 1 pectin methylesterase 1, pectin
methylesterase 1		 0.66 0.35 -0.31
72 AT2G14040 transposable element gene -0.66 0.31 -0.32
73 AT3G13620 Amino acid permease family protein 0.66 0.29 -0.33
74 AT2G21740 Protein of unknown function (DUF1278) 0.66 0.3 -0.31
75 AT5G57320 villin, putative villin 5 -0.66 0.29 -0.31
76 AT5G20650 copper transporter 5 copper transporter 5 0.66 0.34 -0.31
77 AT5G24520 Transducin/WD40 repeat-like superfamily protein TRANSPARENT TESTA GLABRA 1, TTG,
TRANSPARENT TESTA GLABRA 1,
UNARMED 23		 0.66 0.3 -0.31
78 AT2G27960 cyclin-dependent kinase-subunit 1 cyclin-dependent kinase-subunit 1,
CKS1AT		 0.66 0.32 -0.31
79 AT5G34800 transposable element gene -0.66 0.31 -0.32
80 AT1G34750 Protein phosphatase 2C family protein -0.66 0.33 -0.32
81 AT4G37170 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.3 -0.31
82 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 -0.65 0.32 -0.3
83 AT4G32700 helicases;ATP-dependent helicases;nucleic acid binding;ATP
binding;DNA-directed DNA polymerases;DNA binding		 TEBICHI -0.65 0.33 -0.32
84 AT2G44810 alpha/beta-Hydrolases superfamily protein DEFECTIVE ANTHER DEHISCENCE 1 -0.65 0.31 -0.3
85 AT2G03580 F-box family protein-related -0.65 0.31 -0.32
86 AT1G53720 cyclophilin 59 CYCLOPHILIN 59, cyclophilin 59 -0.65 0.3 -0.32
87 AT1G26300 BSD domain-containing protein 0.65 0.31 -0.32
88 AT5G60910 AGAMOUS-like 8 AGAMOUS-like 8, FRUITFULL 0.65 0.3 -0.3
89 AT1G02320 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.65 0.31 -0.29
90 AT3G29110 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.65 0.32 -0.3
91 AT5G18120 APR-like 7 APR-like 7, APR-like 7 0.65 0.32 -0.31
92 AT1G31040 PLATZ transcription factor family protein 0.65 0.33 -0.33
93 AT3G11380 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.33 -0.31
94 AT3G60590 unknown protein; LOCATED IN: chloroplast, chloroplast inner
membrane, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G48460.1); Has 81 Blast hits to 81 proteins in 19
species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.64 0.29 -0.33
95 AT5G39870 Protein of unknown function (DUF1216) -0.64 0.31 -0.31
96 ATMG00820 Reverse transcriptase (RNA-dependent DNA polymerase) ORF170 -0.64 0.32 -0.29
97 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.64 0.3 -0.34
98 AT2G15890 maternal effect embryo arrest 14 maternal effect embryo arrest 14 0.64 0.32 -0.32
99 AT4G23950 Galactose-binding protein -0.64 0.29 -0.32
100 AT4G23590 Tyrosine transaminase family protein 0.64 0.29 -0.32
101 AT3G19680 Protein of unknown function (DUF1005) 0.64 0.32 -0.31
102 AT1G16490 myb domain protein 58 MYB DOMAIN PROTEIN 58, myb domain
protein 58		 0.64 0.3 -0.32
103 AT4G26160 atypical CYS HIS rich thioredoxin 1 atypical CYS HIS rich thioredoxin
1		 0.64 0.31 -0.31
104 AT5G27190 transposable element gene -0.64 0.31 -0.3
105 AT2G15325 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.32 -0.31
106 AT4G25540 homolog of DNA mismatch repair protein MSH3 ATMSH3, homolog of DNA mismatch
repair protein MSH3		 -0.63 0.31 -0.31
107 AT1G38340 transposable element gene -0.63 0.31 -0.32
108 AT1G08080 alpha carbonic anhydrase 7 alpha carbonic anhydrase 7, A.
THALIANA ALPHA CARBONIC ANHYDRASE
7		 -0.63 0.3 -0.31
109 AT2G22290 RAB GTPase homolog H1D ARABIDOPSIS RAB GTPASE HOMOLOG
H1D, ARABIDOPSIS RAB GTPASE
HOMOLOG 6, RAB GTPase homolog H1D,
RAB GTPASE HOMOLOG H1D, RAB GTPase
homolog H1D		 0.63 0.3 -0.3
110 AT1G49160 Protein kinase superfamily protein WNK7 -0.63 0.28 -0.32
111 AT5G51260 HAD superfamily, subfamily IIIB acid phosphatase 0.63 0.32 -0.31
112 AT1G27040 Major facilitator superfamily protein -0.63 0.32 -0.31
113 AT1G68610 PLANT CADMIUM RESISTANCE 11 PLANT CADMIUM RESISTANCE 11 0.63 0.31 -0.32
114 AT2G15570 Thioredoxin superfamily protein ATHM3, Arabidopsis thioredoxin
M-type 3, GFP ARRESTED TRAFFICKING
1, THIOREDOXIN-M3		 0.63 0.32 -0.31
115 AT5G01550 lectin receptor kinase a4.1 lectin receptor kinase a4.1 -0.63 0.31 -0.31
116 AT1G42420 transposable element gene 0.63 0.32 -0.34
117 AT5G01730 SCAR family protein 4 ATSCAR4, SCAR family protein 4,
WAVE3		 -0.62 0.32 -0.3
118 AT1G16950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stamen; EXPRESSED
DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.31 -0.32
119 AT2G36440 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.32 -0.32
120 AT1G61400 S-locus lectin protein kinase family protein -0.61 0.31 -0.33
121 AT3G58560 DNAse I-like superfamily protein -0.61 0.32 -0.33
122 AT1G22830 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.31 -0.31
123 AT5G39820 NAC domain containing protein 94 NAC domain containing protein 94,
NAC domain containing protein 94		 -0.61 0.32 -0.3
124 AT1G64500 Glutaredoxin family protein -0.61 0.32 -0.33
125 AT3G31340 transposable element gene -0.61 0.33 -0.3
126 AT5G07480 KAR-UP oxidoreductase 1 KAR-UP oxidoreductase 1 -0.61 0.33 -0.3
127 AT5G07550 glycine-rich protein 19 ATGRP19, glycine-rich protein 19 -0.61 0.31 -0.31
128 AT2G18120 SHI-related sequence 4 SHI-related sequence 4 -0.61 0.32 -0.32
129 AT3G54490 RNA polymerase II fifth largest subunit, E RNA polymerase II fifth largest
subunit, E		 -0.6 0.31 -0.3
130 AT4G22970 homolog of separase homolog of separase, homolog of
separase, SEPARASE, RADIALLY
SWOLLEN 4		 -0.6 0.31 -0.33
131 AT3G43590 zinc knuckle (CCHC-type) family protein -0.6 0.34 -0.35
132 AT2G14020 transposable element gene -0.6 0.31 -0.28
133 AT3G46200 nudix hydrolase homolog 9 nudix hydrolase homolog 9, nudix
hydrolase homolog 9		 -0.6 0.31 -0.33
134 AT2G19070 spermidine hydroxycinnamoyl transferase spermidine hydroxycinnamoyl
transferase		 -0.6 0.31 -0.3
135 AT4G19620 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.34 -0.32
136 AT4G19780 transposable element gene -0.6 0.32 -0.32
137 AT3G15310 transposable element gene -0.6 0.31 -0.32
138 AT1G15280 CASC3/Barentsz eIF4AIII binding -0.6 0.33 -0.34
139 AT2G12230 pseudogene, C-1-tetrahydrofolate synthase, blastp match of
91% identity and 2.9e-07 P-value to
GP|9843502|emb|CAC03667.1||AL133260 dJ292B18.2 (novel
protein similar to methylenetetrahydrofolate dehydrogenase
(NADP+ dependent), methenyltetrahydrofolate cyclohydrolase,
formyltetrahydrofolate synthetase (MTHFD1) (EC 1.5.1.5, EC
3.5.4.9, EC-TRUNCATED-		 -0.6 0.32 -0.33
140 AT3G63250 homocysteine methyltransferase 2 HOMOCYSTEINE METHYLTRANSFERASE-2,
HOMOCYSTEINE METHYLTRANSFERASE-2,
homocysteine methyltransferase 2		 -0.6 0.33 -0.33
141 AT2G30090 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.6 0.31 -0.32
142 AT3G17340 ARM repeat superfamily protein -0.6 0.3 -0.31
143 AT4G05610 transposable element gene -0.6 0.29 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
144 C0145 Maltotetraose - Maltotetraose starch degradation II -0.74 0.45 -0.47 C0145
145 C0200 Phosphatidylglycerol-32:0 - Phosphatidylglycerol-32:0 cardiolipin biosynthesis II,
linoleate biosynthesis I,
glycerophosphodiester degradation,
glutathione redox reactions I 		0.63 0.32 -0.34