AT3G59900 : AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE
Query Information
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AGICode AT3G59900
Description auxin-regulated gene involved in organ size
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G59900 auxin-regulated gene involved in organ size AUXIN-REGULATED GENE INVOLVED IN
ORGAN SIZE		 1 0.32 -0.3
2 AT5G01210 HXXXD-type acyl-transferase family protein 0.81 0.32 -0.32
3 AT2G41230 unknown protein; Has 75 Blast hits to 75 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ORGAN SIZE RELATED 1 0.81 0.31 -0.29
4 AT2G39980 HXXXD-type acyl-transferase family protein 0.81 0.35 -0.31
5 AT1G62380 ACC oxidase 2 ACC oxidase 2, ATACO2 0.77 0.32 -0.3
6 AT2G16060 hemoglobin 1 hemoglobin 1, ARATH GLB1, ATGLB1,
CLASS I HEMOGLOBIN, hemoglobin 1,
NSHB1		 0.76 0.34 -0.31
7 AT2G40940 ethylene response sensor 1 ETHYLENE RESPONSE SENSOR, ethylene
response sensor 1		 0.76 0.3 -0.31
8 AT4G32460 Protein of unknown function, DUF642 0.76 0.31 -0.32
9 AT1G62410 MIF4G domain-containing protein 0.76 0.32 -0.32
10 AT3G23150 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 ethylene response 2 0.75 0.32 -0.32
11 AT2G19590 ACC oxidase 1 ACC oxidase 1, ATACO1 0.75 0.31 -0.29
12 AT2G44080 ARGOS-like ARGOS-like 0.75 0.31 -0.33
13 AT5G52250 Transducin/WD40 repeat-like superfamily protein EARLY FLOWERING BY OVEREXPRESSION
1, REPRESSOR OF UV-B
PHOTOMORPHOGENESIS 1		 0.74 0.33 -0.33
14 AT1G14890 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.74 0.33 -0.33
15 AT3G16280 Integrase-type DNA-binding superfamily protein -0.73 0.34 -0.3
16 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 0.73 0.31 -0.32
17 AT2G34520 mitochondrial ribosomal protein S14 mitochondrial ribosomal protein
S14		 0.73 0.31 -0.33
18 AT3G14230 related to AP2 2 related to AP2 2 0.73 0.31 -0.3
19 AT5G62130 Per1-like family protein -0.72 0.31 -0.32
20 AT1G14670 Endomembrane protein 70 protein family 0.72 0.3 -0.32
21 AT5G62280 Protein of unknown function (DUF1442) 0.72 0.32 -0.32
22 AT5G67060 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 HECATE 1 0.72 0.29 -0.32
23 AT5G16470 zinc finger (C2H2 type) family protein 0.72 0.32 -0.32
24 AT1G55190 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F2, PRA7 0.71 0.31 -0.31
25 AT5G17780 alpha/beta-Hydrolases superfamily protein 0.71 0.32 -0.31
26 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.71 0.32 -0.3
27 AT5G19680 Leucine-rich repeat (LRR) family protein 0.71 0.32 -0.33
28 AT4G39675 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.71 0.32 -0.31
29 AT3G43430 RING/U-box superfamily protein 0.71 0.3 -0.32
30 AT4G31080 Protein of unknown function (DUF2296) 0.7 0.35 -0.31
31 AT1G07615 GTP-binding protein Obg/CgtA 0.7 0.34 -0.31
32 AT3G57550 guanylate kinase guanylate kinase, GUANYLATE KINAS
2		 0.7 0.3 -0.33
33 AT5G09970 cytochrome P450, family 78, subfamily A, polypeptide 7 cytochrome P450, family 78,
subfamily A, polypeptide 7		 0.7 0.31 -0.33
34 AT4G26790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.69 0.33 -0.36
35 AT2G26070 Protein of unknown function (DUF778) REVERSION-TO-ETHYLENE SENSITIVITY1 0.69 0.3 -0.33
36 AT5G07890 myosin heavy chain-related -0.69 0.32 -0.33
37 AT1G73950 Transmembrane Fragile-X-F-associated protein -0.69 0.33 -0.32
38 AT1G72360 Integrase-type DNA-binding superfamily protein AtERF73, ethylene response factor
73, HYPOXIA RESPONSIVE ERF
(ETHYLENE RESPONSE FACTOR) 1		 0.68 0.29 -0.32
39 AT4G02630 Protein kinase superfamily protein -0.68 0.29 -0.32
40 AT5G19890 Peroxidase superfamily protein 0.68 0.3 -0.33
41 AT5G49700 Predicted AT-hook DNA-binding family protein 0.68 0.31 -0.32
42 AT3G05950 RmlC-like cupins superfamily protein 0.68 0.31 -0.34
43 AT1G18400 BR enhanced expression 1 BR enhanced expression 1 0.68 0.3 -0.31
44 AT2G15640 F-box family protein -0.67 0.31 -0.32
45 AT3G25730 ethylene response DNA binding factor 3 ethylene response DNA binding
factor 3		 0.67 0.34 -0.3
46 AT3G51410 Arabidopsis protein of unknown function (DUF241) 0.67 0.3 -0.34
47 AT1G05720 selenoprotein family protein 0.67 0.31 -0.3
48 AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily 0.67 0.32 -0.32
49 AT5G53980 homeobox protein 52 homeobox protein 52, homeobox
protein 52		 0.67 0.3 -0.32
50 AT2G43870 Pectin lyase-like superfamily protein 0.67 0.3 -0.34
51 AT1G10130 endoplasmic reticulum-type calcium-transporting ATPase 3 ARABIDOPSIS THALIANA ER-TYPE
CA2+-ATPASE 3, endoplasmic
reticulum-type
calcium-transporting ATPase 3		 0.67 0.31 -0.33
52 AT5G20820 SAUR-like auxin-responsive protein family 0.67 0.32 -0.3
53 AT2G24765 ADP-ribosylation factor 3 ADP-ribosylation factor 3,
ARF-LIKE 1, ARF-LIKE 1		 0.67 0.32 -0.31
54 AT1G20823 RING/U-box superfamily protein -0.67 0.33 -0.32
55 AT4G01950 glycerol-3-phosphate acyltransferase 3 ATGPAT3, glycerol-3-phosphate
acyltransferase 3		 -0.67 0.32 -0.33
56 AT5G03730 Protein kinase superfamily protein AtCTR1, CONSTITUTIVE TRIPLE
RESPONSE 1, SUGAR-INSENSITIVE 1		 0.66 0.33 -0.33
57 AT4G24250 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 13,
MILDEW RESISTANCE LOCUS O 13		 -0.66 0.32 -0.31
58 AT5G56300 gibberellic acid methyltransferase 2 gibberellic acid methyltransferase
2		 0.66 0.3 -0.31
59 AT2G34080 Cysteine proteinases superfamily protein 0.66 0.33 -0.3
60 AT5G57530 xyloglucan endotransglucosylase/hydrolase 12 AtXTH12, xyloglucan
endotransglucosylase/hydrolase 12		 0.66 0.31 -0.34
61 AT4G22150 plant UBX domain-containing protein 3 plant UBX domain-containing
protein 3		 0.66 0.3 -0.3
62 AT1G75030 thaumatin-like protein 3 thaumatin-like protein 3,
thaumatin-like protein 3		 -0.66 0.32 -0.32
63 AT1G19530 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation, anaerobic
respiration; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl,
root, flower; EXPRESSED DURING: petal differentiation and
expansion stage; Has 47 Blast hits to 47 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.33 -0.31
64 AT1G09570 phytochrome A FAR RED ELONGATED HYPOCOTYL 2, FAR
RED ELONGATED 1, ELONGATED
HYPOCOTYL 8, phytochrome A		 0.66 0.32 -0.32
65 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 0.65 0.29 -0.32
66 AT3G14410 Nucleotide/sugar transporter family protein 0.65 0.31 -0.32
67 AT1G75540 salt tolerance homolog2 B BOX 21, B-box domain protein 21,
long hypocotyl under shade, salt
tolerance homolog2		 0.65 0.31 -0.33
68 AT3G54040 PAR1 protein 0.65 0.33 -0.3
69 AT3G58780 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 1, SHATTERPROOF 1 0.65 0.32 -0.28
70 AT4G15660 Thioredoxin superfamily protein 0.65 0.32 -0.32
71 AT4G22850 SNARE associated Golgi protein family 0.65 0.31 -0.31
72 AT3G43190 sucrose synthase 4 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 4, sucrose synthase 4		 0.65 0.32 -0.32
73 AT4G02270 root hair specific 13 root hair specific 13 0.65 0.34 -0.31
74 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 -0.65 0.36 -0.29
75 AT5G66080 Protein phosphatase 2C family protein -0.64 0.32 -0.31
76 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.64 0.31 -0.32
77 AT5G62800 Protein with RING/U-box and TRAF-like domains -0.64 0.33 -0.32
78 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 0.64 0.34 -0.34
79 AT4G19040 ENHANCED DISEASE RESISTANCE 2 ENHANCED DISEASE RESISTANCE 2 -0.64 0.3 -0.29
80 AT3G05760 C2H2 and C2HC zinc fingers superfamily protein 0.64 0.3 -0.31
81 AT5G01880 RING/U-box superfamily protein -0.64 0.31 -0.31
82 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 0.64 0.3 -0.33
83 AT1G12560 expansin A7 ATEXP7, expansin A7, ATHEXP ALPHA
1.26, EXP7, expansin A7		 0.64 0.32 -0.33
84 AT1G30000 alpha-mannosidase 3 alpha-mannosidase 3 0.64 0.31 -0.32
85 AT2G03690 coenzyme Q biosynthesis Coq4 family protein / ubiquinone
biosynthesis Coq4 family protein		 0.64 0.33 -0.3
86 AT5G50335 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.64 0.32 -0.32
87 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 -0.64 0.3 -0.3
88 AT2G22620 Rhamnogalacturonate lyase family protein -0.64 0.31 -0.31
89 AT5G44730 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.64 0.32 -0.31
90 AT4G28850 xyloglucan endotransglucosylase/hydrolase 26 ATXTH26, xyloglucan
endotransglucosylase/hydrolase 26		 0.63 0.32 -0.31
91 AT1G77380 amino acid permease 3 amino acid permease 3, ATAAP3 0.63 0.29 -0.31
92 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.63 0.31 -0.3
93 AT3G30843 transposable element gene 0.63 0.32 -0.31
94 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 -0.63 0.33 -0.32
95 AT4G33720 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.63 0.32 -0.33
96 AT1G69230 SPIRAL1-like2 SPIRAL1-like2 -0.63 0.34 -0.33
97 AT2G44360 unknown protein; Has 23 Blast hits to 23 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.32 -0.32
98 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 -0.63 0.31 -0.3
99 AT2G34290 Protein kinase superfamily protein -0.63 0.3 -0.29
100 AT1G75590 SAUR-like auxin-responsive protein family 0.63 0.34 -0.34
101 AT2G24980 Proline-rich extensin-like family protein extensin 6 0.63 0.32 -0.32
102 AT1G04610 YUCCA 3 YUCCA 3 0.63 0.32 -0.32
103 AT5G51290 Diacylglycerol kinase family protein -0.62 0.32 -0.31
104 AT4G11280 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 1-aminocyclopropane-1-carboxylic
acid (acc) synthase 6, ATACS6		 -0.62 0.3 -0.32
105 AT5G47530 Auxin-responsive family protein -0.62 0.32 -0.3
106 AT1G74930 Integrase-type DNA-binding superfamily protein ORA47 -0.62 0.33 -0.31
107 AT4G21760 beta-glucosidase 47 beta-glucosidase 47 -0.62 0.33 -0.33
108 AT4G27657 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G54145.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.62 0.3 -0.31
109 AT5G45850 Protein of unknown function (DUF688) -0.62 0.32 -0.32
110 AT2G17470 Aluminium activated malate transporter family protein ALuminium activated Malate
Transporter 6, AtALMT6		 -0.62 0.32 -0.29
111 AT5G37990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.62 0.31 -0.31
112 AT1G51670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48180.1); Has 37 Blast hits
to 37 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.3
113 AT1G77390 CYCLIN A1;2 CYCLIN A1, CYCLIN A1;2, DYP, TARDY
ASYNCHRONOUS MEIOSIS		 -0.61 0.31 -0.32
114 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.6 0.35 -0.33
115 AT2G17650 AMP-dependent synthetase and ligase family protein -0.6 0.3 -0.33
116 AT2G32430 Galactosyltransferase family protein -0.6 0.31 -0.33
117 AT5G38870 transposable element gene -0.59 0.33 -0.3
118 AT1G78950 Terpenoid cyclases family protein -0.59 0.3 -0.3
119 AT5G64530 xylem NAC domain 1 Arabidopsis NAC domain containing
protein 104, xylem NAC domain 1		 -0.58 0.31 -0.32
120 AT3G43940 unknown protein; Has 24 Blast hits to 24 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.32 -0.3
121 AT5G51990 C-repeat-binding factor 4 C-repeat-binding factor 4,
DEHYDRATION-RESPONSIVE
ELEMENT-BINDING PROTEIN 1D		 -0.57 0.33 -0.33
122 AT1G15190 Fasciclin-like arabinogalactan family protein -0.57 0.31 -0.31
123 AT5G36990 transposable element gene -0.57 0.31 -0.3
124 AT2G01610 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.57 0.32 -0.3
125 AT2G17260 glutamate receptor 2 ATGLR2, ATGLR3.1, glutamate
receptor 2, GLR3.1		 -0.57 0.31 -0.3
126 AT5G44550 Uncharacterised protein family (UPF0497) -0.57 0.31 -0.31
127 AT5G09220 amino acid permease 2 amino acid permease 2 -0.56 0.31 -0.32
128 AT3G43900 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43910.1); Has 15 Blast hits
to 15 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.32 -0.32
129 AT4G00890 proline-rich family protein -0.56 0.32 -0.32
130 AT3G56710 sigma factor binding protein 1 sigma factor binding protein 1 -0.56 0.3 -0.29
131 AT5G46400 Tetratricopeptide repeat (TPR)-like superfamily protein AT PRP39-2, PRP39-2 -0.56 0.32 -0.32
132 AT1G75140 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink).		 -0.56 0.34 -0.32
133 AT5G36870 glucan synthase-like 9 glucan synthase-like 9, atgsl9,
gsl09, glucan synthase-like 9		 -0.56 0.32 -0.31
134 AT2G27395 pseudogene of cysteine protease-related -0.56 0.33 -0.34
135 AT1G64590 NAD(P)-binding Rossmann-fold superfamily protein -0.56 0.32 -0.3
136 AT3G11000 DCD (Development and Cell Death) domain protein -0.56 0.32 -0.31
137 AT2G33490 hydroxyproline-rich glycoprotein family protein -0.56 0.28 -0.32
138 AT2G22500 uncoupling protein 5 PLANT UNCOUPLING MITOCHONDRIAL
PROTEIN 5, DICARBOXYLATE CARRIER
1, uncoupling protein 5		 -0.56 0.29 -0.35
139 AT4G01210 glycosyl transferase family 1 protein -0.56 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
140 C0010 myo-Inositol-1-phosphate D,L-myo-Inositol-1-phosphate 1D-myo-Inositol (3)-phosphate myo-inositol biosynthesis,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) 		-0.81 0.45 -0.46 C0010