AT3G59920 : RAB GDP dissociation inhibitor 2
Query Information
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AGICode AT3G59920
Description RAB GDP dissociation inhibitor 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G59920 RAB GDP dissociation inhibitor 2 RAB GDP dissociation inhibitor 2,
RAB GDP dissociation inhibitor 2		 1 0.32 -0.33
2 AT2G20760 Clathrin light chain protein 0.8 0.31 -0.33
3 AT4G31340 myosin heavy chain-related 0.78 0.32 -0.32
4 AT1G36050 Endoplasmic reticulum vesicle transporter protein 0.78 0.29 -0.3
5 AT1G27970 nuclear transport factor 2B nuclear transport factor 2B 0.77 0.32 -0.3
6 AT5G17770 NADH:cytochrome B5 reductase 1 NADH:cytochrome B5 reductase 1,
NADH:cytochrome B5 reductase 1,
NADH:CYTOCHROME B5 REDUCTASE 1		 0.77 0.32 -0.33
7 AT4G16143 importin alpha isoform 2 importin alpha isoform 2 0.77 0.31 -0.34
8 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.33 -0.32
9 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 -0.75 0.31 -0.32
10 AT5G59880 actin depolymerizing factor 3 actin depolymerizing factor 3 0.75 0.34 -0.3
11 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 0.75 0.31 -0.36
12 AT4G26210 Mitochondrial ATP synthase subunit G protein 0.75 0.32 -0.31
13 AT5G61240 Leucine-rich repeat (LRR) family protein 0.75 0.33 -0.32
14 AT5G15090 voltage dependent anion channel 3 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 3, voltage
dependent anion channel 3		 0.74 0.34 -0.3
15 AT3G54960 PDI-like 1-3 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 1, PDI-like
1-3, PROTEIN DISULFIDE ISOMERASE
1, PDI-like 1-3		 0.74 0.31 -0.33
16 AT1G30630 Coatomer epsilon subunit 0.74 0.31 -0.33
17 AT1G18480 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP2, Shewenella-like protein
phosphatase 2		 0.74 0.31 -0.29
18 AT4G22930 pyrimidin 4 DIHYDROOROTASE, pyrimidin 4 0.74 0.32 -0.31
19 AT2G17390 ankyrin repeat-containing 2B ankyrin repeat-containing 2B 0.74 0.31 -0.31
20 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c		 0.73 0.32 -0.28
21 AT2G30050 transducin family protein / WD-40 repeat family protein 0.73 0.3 -0.32
22 AT1G80910 Protein of unknown function (DUF1712) 0.73 0.33 -0.32
23 AT1G45688 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast
hits to 242 proteins in 39 species: Archae - 0; Bacteria -
11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17;
Other Eukaryotes - 8 (source: NCBI BLink).		 0.73 0.31 -0.32
24 AT4G38920 vacuolar-type H(+)-ATPase C3 vacuolar-type H(+)-ATPase C3,
AVA-P3, vacuolar-type H(+)-ATPase
C3		 0.73 0.34 -0.32
25 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR 0.73 0.3 -0.34
26 AT4G14800 20S proteasome beta subunit D2 20S proteasome beta subunit D2 0.73 0.33 -0.32
27 AT4G29350 profilin 2 profilin 2, PROFILIN 2, PROFILIN 2 0.72 0.31 -0.31
28 AT3G52930 Aldolase superfamily protein 0.72 0.32 -0.31
29 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 0.72 0.31 -0.32
30 AT2G36310 uridine-ribohydrolase 1 nucleoside hydrolase 1,
uridine-ribohydrolase 1		 0.72 0.31 -0.32
31 AT3G04080 apyrase 1 apyrase 1, apyrase 1 0.71 0.3 -0.31
32 AT5G54980 Uncharacterised protein family (UPF0497) -0.71 0.32 -0.31
33 AT1G75950 S phase kinase-associated protein 1 ARABIDOPSIS SKP1 HOMOLOGUE 1,
ATSKP1, S phase kinase-associated
protein 1, SKP1A, UFO INTERACTING
PROTEIN 1		 0.71 0.32 -0.32
34 AT2G21160 Translocon-associated protein (TRAP), alpha subunit 0.71 0.3 -0.31
35 AT3G04780 Protein of unknown function (DUF1000) 0.71 0.33 -0.34
36 AT5G46230 Protein of unknown function, DUF538 0.71 0.32 -0.31
37 AT5G63400 adenylate kinase 1 adenylate kinase 1 0.71 0.35 -0.31
38 AT2G19810 CCCH-type zinc finger family protein AtOZF1, Oxidation-related Zinc
Finger 1		 -0.71 0.3 -0.31
39 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 -0.71 0.31 -0.31
40 AT2G33040 gamma subunit of Mt ATP synthase gamma subunit of Mt ATP synthase 0.7 0.32 -0.32
41 AT2G01970 Endomembrane protein 70 protein family 0.7 0.29 -0.32
42 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.33 -0.33
43 AT4G38630 regulatory particle non-ATPase 10 ATMCB1, MULTIUBIQUITIN CHAIN
BINDING PROTEIN 1,
MULTIUBIQUITIN-CHAIN-BINDING
PROTEIN 1, regulatory particle
non-ATPase 10		 0.7 0.31 -0.33
44 AT1G22530 PATELLIN 2 PATELLIN 2 0.69 0.3 -0.32
45 AT4G31080 Protein of unknown function (DUF2296) 0.69 0.32 -0.31
46 AT3G45420 Concanavalin A-like lectin protein kinase family protein -0.69 0.32 -0.32
47 AT1G69960 serine/threonine protein phosphatase 2A serine/threonine protein
phosphatase 2A		 0.69 0.31 -0.31
48 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.69 0.3 -0.32
49 AT3G16760 Tetratricopeptide repeat (TPR)-like superfamily protein 0.69 0.31 -0.34
50 AT5G57230 Thioredoxin superfamily protein 0.69 0.34 -0.34
51 AT5G09890 Protein kinase family protein 0.69 0.34 -0.31
52 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 0.69 0.32 -0.3
53 AT2G34020 Calcium-binding EF-hand family protein 0.69 0.31 -0.31
54 AT1G63000 nucleotide-rhamnose synthase/epimerase-reductase nucleotide-rhamnose
synthase/epimerase-reductase,
UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-E
PIMERASE-4-REDUCTASE 1		 0.68 0.31 -0.33
55 AT5G45510 Leucine-rich repeat (LRR) family protein 0.68 0.33 -0.3
56 AT2G31980 PHYTOCYSTATIN 2 PHYTOCYSTATIN 2, PHYTOCYSTATIN 2 -0.68 0.32 -0.31
57 AT1G08040 Protein of unknown function (DUF707) -0.68 0.34 -0.31
58 AT1G71840 transducin family protein / WD-40 repeat family protein 0.67 0.32 -0.3
59 AT5G13710 sterol methyltransferase 1 CEPHALOPOD, sterol
methyltransferase 1		 0.67 0.32 -0.33
60 AT1G51540 Galactose oxidase/kelch repeat superfamily protein 0.67 0.32 -0.31
61 AT5G15190 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 7 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.33 -0.32
62 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 0.67 0.31 -0.31
63 AT3G56110 prenylated RAB acceptor 1.B1 prenylated RAB acceptor 1.B1 0.67 0.33 -0.34
64 AT1G71780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.33 -0.32
65 AT2G40730 Protein kinase family protein with ARM repeat domain cytoplasmic tRNA export protein 0.67 0.31 -0.32
66 AT2G32970 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.67 0.3 -0.32
67 AT4G02930 GTP binding Elongation factor Tu family protein 0.67 0.33 -0.31
68 AT1G44760 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.66 0.31 -0.32
69 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.65 0.32 -0.31
70 AT1G21060 Protein of unknown function, DUF547 -0.65 0.32 -0.31
71 AT5G44660 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits
to 462 proteins in 141 species: Archae - 2; Bacteria - 370;
Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other
Eukaryotes - 239 (source: NCBI BLink).		 -0.64 0.32 -0.32
72 AT4G35560 Transducin/WD40 repeat-like superfamily protein DUO1-activated WD40 1 -0.64 0.35 -0.3
73 AT1G41900 transposable element gene -0.64 0.32 -0.34
74 AT2G05270 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.64 0.32 -0.3
75 AT5G06530 ABC-2 type transporter family protein ATP-binding cassette G22,
Arabidopsis thaliana ATP-binding
cassette G22		 -0.63 0.32 -0.31
76 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.31
77 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.63 0.3 -0.34
78 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 -0.63 0.33 -0.33
79 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.62 0.29 -0.29
80 AT3G22810 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.61 0.31 -0.31
81 AT5G40910 Disease resistance protein (TIR-NBS-LRR class) family -0.6 0.31 -0.31
82 AT1G67050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits
to 318 proteins in 80 species: Archae - 0; Bacteria - 16;
Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other
Eukaryotes - 268 (source: NCBI BLink).		 -0.6 0.32 -0.33
83 ATCG00080 photosystem II reaction center protein I photosystem II reaction center
protein I		 -0.6 0.31 -0.32
84 AT1G66140 zinc finger protein 4 zinc finger protein 4 -0.6 0.32 -0.32
85 AT4G03580 BEST Arabidopsis thaliana protein match is: Cysteine
proteinases superfamily protein (TAIR:AT5G17080.1); Has 155
Blast hits to 136 proteins in 31 species: Archae - 0;
Bacteria - 11; Metazoa - 28; Fungi - 14; Plants - 17;
Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).		 -0.59 0.29 -0.32
86 AT4G03205 Coproporphyrinogen III oxidase hemf2 -0.59 0.31 -0.33
87 ATCG00770 ribosomal protein S8 ribosomal protein S8 -0.59 0.31 -0.3
88 AT2G42560 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 -0.59 0.31 -0.32
89 AT5G08430 SWIB/MDM2 domain;Plus-3;GYF -0.58 0.32 -0.32
90 ATCG01100 NADH dehydrogenase family protein NDHA -0.57 0.3 -0.34
91 AT2G39580 CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain
(InterPro:IPR019607); Has 249 Blast hits to 219 proteins in
85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi
- 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18
(source: NCBI BLink).		 -0.57 0.32 -0.31
92 AT3G17230 invertase/pectin methylesterase inhibitor family protein -0.57 0.3 -0.29
93 AT1G23200 Plant invertase/pectin methylesterase inhibitor superfamily -0.57 0.34 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
94 C0003 α-Tocopherol - alpha-Tocopherol vitamin E biosynthesis -0.77 0.47 -0.44 C0003
95 C0176 MST_2406.9 - - - -0.68 0.46 -0.43
96 C0180 MST_2539.9 - - - -0.65 0.46 -0.46