AT3G59040 : -
Query Information
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AGICode AT3G59040
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 1 0.34 -0.3
2 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.94 0.33 -0.31
3 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.94 0.34 -0.33
4 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.93 0.34 -0.31
5 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.93 0.32 -0.32
6 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.93 0.33 -0.32
7 AT5G63050 embryo defective 2759 embryo defective 2759 0.93 0.31 -0.33
8 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.93 0.29 -0.32
9 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.93 0.32 -0.33
10 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.92 0.34 -0.31
11 AT2G28605 Photosystem II reaction center PsbP family protein 0.92 0.3 -0.35
12 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.92 0.3 -0.33
13 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.92 0.33 -0.31
14 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.92 0.31 -0.3
15 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.92 0.31 -0.32
16 AT3G49140 Pentatricopeptide repeat (PPR) superfamily protein 0.92 0.3 -0.32
17 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.92 0.31 -0.3
18 AT3G51870 Mitochondrial substrate carrier family protein 0.91 0.35 -0.31
19 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.91 0.32 -0.32
20 AT4G26370 antitermination NusB domain-containing protein 0.91 0.3 -0.31
21 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.91 0.31 -0.31
22 AT4G17740 Peptidase S41 family protein 0.91 0.31 -0.32
23 AT3G21300 RNA methyltransferase family protein 0.91 0.33 -0.32
24 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.91 0.31 -0.3
25 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.91 0.32 -0.31
26 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.9 0.31 -0.32
27 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.9 0.31 -0.31
28 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.9 0.33 -0.3
29 AT2G24060 Translation initiation factor 3 protein 0.9 0.31 -0.29
30 AT1G49380 cytochrome c biogenesis protein family 0.9 0.34 -0.34
31 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.9 0.31 -0.33
32 AT2G14880 SWIB/MDM2 domain superfamily protein 0.9 0.3 -0.31
33 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.9 0.32 -0.3
34 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.9 0.31 -0.31
35 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.9 0.33 -0.31
36 AT4G34290 SWIB/MDM2 domain superfamily protein 0.89 0.31 -0.31
37 AT3G48110 glycine-tRNA ligases EDD, EMBRYO-DEFECTIVE-DEVELOPMENT
1		 0.89 0.32 -0.31
38 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.3 -0.31
39 AT5G66470 RNA binding;GTP binding 0.89 0.3 -0.37
40 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.89 0.32 -0.33
41 AT5G49030 tRNA synthetase class I (I, L, M and V) family protein ovule abortion 2 0.89 0.33 -0.31
42 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.89 0.29 -0.3
43 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.89 0.31 -0.3
44 AT3G18890 NAD(P)-binding Rossmann-fold superfamily protein translocon at the inner envelope
membrane of chloroplasts 62,
translocon at the inner envelope
membrane of chloroplasts 62		 0.89 0.31 -0.31
45 AT1G71720 Nucleic acid-binding proteins superfamily PIGMENT DEFECTIVE 338 0.89 0.3 -0.29
46 AT5G05740 ethylene-dependent gravitropism-deficient and
yellow-green-like 2		 ATEGY2, ethylene-dependent
gravitropism-deficient and
yellow-green-like 2		 0.88 0.32 -0.29
47 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.88 0.29 -0.31
48 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.88 0.33 -0.31
49 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.88 0.32 -0.31
50 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.34 -0.31
51 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.88 0.33 -0.32
52 AT1G59720 Tetratricopeptide repeat (TPR)-like superfamily protein CHLORORESPIRATORY REDUCTION28 0.88 0.31 -0.33
53 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.88 0.32 -0.31
54 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.29 -0.33
55 AT3G56330 N2,N2-dimethylguanosine tRNA methyltransferase 0.88 0.32 -0.3
56 AT1G56050 GTP-binding protein-related 0.87 0.32 -0.3
57 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.87 0.29 -0.31
58 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.87 0.32 -0.3
59 AT5G10910 mraW methylase family protein 0.87 0.32 -0.31
60 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.87 0.32 -0.32
61 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.87 0.33 -0.32
62 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.87 0.29 -0.31
63 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.87 0.32 -0.31
64 AT5G55740 Tetratricopeptide repeat (TPR)-like superfamily protein chlororespiratory reduction 21 0.87 0.33 -0.32
65 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.87 0.32 -0.31
66 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.87 0.33 -0.31
67 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.87 0.31 -0.31
68 AT2G04270 RNAse E/G-like RNAse E/G-like 0.87 0.31 -0.31
69 AT5G50280 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1006 0.87 0.3 -0.33
70 AT4G21190 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1417 0.87 0.31 -0.3
71 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.87 0.3 -0.32
72 AT1G78180 Mitochondrial substrate carrier family protein 0.87 0.3 -0.31
73 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.3 -0.29
74 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 0.87 0.31 -0.34
75 AT4G36390 Methylthiotransferase 0.86 0.3 -0.33
76 AT2G45270 glycoprotease 1 glycoprotease 1 0.86 0.31 -0.33
77 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.86 0.32 -0.33
78 AT3G18680 Amino acid kinase family protein 0.86 0.32 -0.31
79 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.86 0.32 -0.31
80 AT3G02450 cell division protein ftsH, putative 0.86 0.33 -0.3
81 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.86 0.31 -0.33
82 AT1G26230 TCP-1/cpn60 chaperonin family protein chaperonin-60beta4 0.86 0.32 -0.32
83 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.86 0.28 -0.31
84 AT3G61780 embryo defective 1703 embryo defective 1703 0.86 0.36 -0.3
85 AT5G62840 Phosphoglycerate mutase family protein 0.86 0.34 -0.3
86 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.86 0.3 -0.32
87 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.86 0.33 -0.31
88 AT4G25990 CCT motif family protein CIL 0.86 0.31 -0.3
89 AT5G57180 chloroplast import apparatus 2 chloroplast import apparatus 2 0.86 0.34 -0.31
90 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.86 0.35 -0.31
91 AT4G26060 Ribosomal protein L18ae family -0.84 0.3 -0.31
92 AT5G06750 Protein phosphatase 2C family protein -0.82 0.3 -0.33
93 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.81 0.31 -0.32
94 AT3G13310 Chaperone DnaJ-domain superfamily protein -0.81 0.34 -0.3
95 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.8 0.31 -0.31
96 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.8 0.31 -0.3
97 AT4G13180 NAD(P)-binding Rossmann-fold superfamily protein -0.8 0.32 -0.3
98 AT5G59510 ROTUNDIFOLIA like 5 DEVIL 18, ROTUNDIFOLIA like 5 -0.79 0.32 -0.29
99 AT2G29990 alternative NAD(P)H dehydrogenase 2 alternative NAD(P)H dehydrogenase
2		 -0.79 0.32 -0.34
100 AT1G68140 Protein of unknown function (DUF1644) -0.78 0.35 -0.31
101 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.78 0.31 -0.34
102 AT1G21450 SCARECROW-like 1 SCARECROW-like 1 -0.78 0.32 -0.31
103 AT3G22850 Aluminium induced protein with YGL and LRDR motifs -0.78 0.31 -0.3
104 AT1G77920 bZIP transcription factor family protein -0.77 0.32 -0.3
105 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.77 0.3 -0.31
106 AT3G28850 Glutaredoxin family protein -0.76 0.31 -0.31
107 AT1G02400 gibberellin 2-oxidase 6 Arabidopsis thaliana gibberellin
2-oxidase 4, ARABIDOPSIS THALIANA
GIBBERELLIN 2-OXIDASE 6,
DOWNSTREAM TARGET OF AGL15 1,
gibberellin 2-oxidase 6		 -0.75 0.31 -0.3
108 AT5G17650 glycine/proline-rich protein -0.75 0.29 -0.29
109 AT3G61980 serine protease inhibitor, Kazal-type family protein -0.74 0.34 -0.32
110 AT4G07390 Mannose-P-dolichol utilization defect 1 protein -0.73 0.32 -0.32
111 AT1G25280 tubby like protein 10 tubby like protein 10, tubby like
protein 10		 -0.73 0.3 -0.3
112 AT5G63450 cytochrome P450, family 94, subfamily B, polypeptide 1 cytochrome P450, family 94,
subfamily B, polypeptide 1		 -0.72 0.31 -0.31
113 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
114 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.87 0.43 -0.47 C0133
115 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.79 0.42 -0.45 C0120