AT3G59010 : pectin methylesterase 61
Query Information
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AGICode AT3G59010
Description pectin methylesterase 61
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 1 0.31 -0.3
2 AT1G33790 jacalin lectin family protein -0.83 0.32 -0.32
3 AT1G06100 Fatty acid desaturase family protein 0.81 0.32 -0.31
4 AT3G61840 Protein of unknown function (DUF688) 0.81 0.3 -0.32
5 AT2G04032 zinc transporter 7 precursor zinc transporter 7 precursor 0.81 0.32 -0.3
6 AT3G10570 cytochrome P450, family 77, subfamily A, polypeptide 6 cytochrome P450, family 77,
subfamily A, polypeptide 6		 0.78 0.32 -0.31
7 AT1G65450 HXXXD-type acyl-transferase family protein 0.77 0.3 -0.3
8 AT2G42430 lateral organ boundaries-domain 16 ASYMMETRIC LEAVES2-LIKE 18,
lateral organ boundaries-domain 16		 -0.75 0.31 -0.28
9 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 -0.74 0.32 -0.31
10 AT1G63710 cytochrome P450, family 86, subfamily A, polypeptide 7 cytochrome P450, family 86,
subfamily A, polypeptide 7		 0.73 0.3 -0.3
11 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 -0.73 0.32 -0.33
12 AT1G32070 nuclear shuttle interacting nuclear shuttle interacting,
nuclear shuttle interacting		 0.72 0.3 -0.33
13 AT2G36350 Protein kinase superfamily protein -0.72 0.32 -0.34
14 AT3G49900 Phototropic-responsive NPH3 family protein 0.72 0.32 -0.33
15 AT5G54530 Protein of unknown function, DUF538 0.72 0.31 -0.29
16 AT2G31040 ATP synthase protein I -related 0.72 0.3 -0.34
17 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.71 0.29 -0.35
18 AT3G20450 B-cell receptor-associated protein 31-like 0.71 0.33 -0.33
19 AT2G23050 Phototropic-responsive NPH3 family protein MAB4/ENP/NPY1-LIKE 4, NAKED PINS
IN YUC MUTANTS 4		 -0.7 0.31 -0.32
20 AT1G78020 Protein of unknown function (DUF581) 0.7 0.32 -0.33
21 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 0.7 0.32 -0.32
22 AT5G40330 myb domain protein 23 MYB DOMAIN PROTEIN 23, ATMYBRTF,
myb domain protein 23		 0.7 0.32 -0.33
23 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 0.7 0.31 -0.34
24 AT5G60880 breaking of asymmetry in the stomatal lineage BREAKING OF ASYMMETRY IN THE
STOMATAL LINEAGE		 0.69 0.33 -0.34
25 AT5G05640 nucleoprotein-related -0.69 0.31 -0.32
26 AT2G43860 Pectin lyase-like superfamily protein -0.69 0.32 -0.31
27 AT1G56020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits
to 958 proteins in 192 species: Archae - 0; Bacteria - 193;
Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8;
Other Eukaryotes - 1887 (source: NCBI BLink).		 -0.69 0.31 -0.31
28 AT3G27473 Cysteine/Histidine-rich C1 domain family protein -0.69 0.32 -0.3
29 AT1G28360 ERF domain protein 12 ERF DOMAIN PROTEIN 12, ERF domain
protein 12		 -0.69 0.29 -0.33
30 AT1G22440 Zinc-binding alcohol dehydrogenase family protein -0.69 0.31 -0.32
31 AT2G25220 Protein kinase superfamily protein 0.69 0.32 -0.3
32 AT2G02850 plantacyanin plantacyanin -0.68 0.31 -0.3
33 AT1G07640 Dof-type zinc finger DNA-binding family protein OBP2 0.68 0.32 -0.3
34 AT2G33850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in
133 species: Archae - 6; Bacteria - 52; Metazoa - 135;
Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes -
2689 (source: NCBI BLink).		 0.68 0.32 -0.32
35 AT2G33530 serine carboxypeptidase-like 46 serine carboxypeptidase-like 46 0.68 0.31 -0.3
36 AT3G50890 homeobox protein 28 homeobox protein 28, homeobox
protein 28, ZINC FINGER
HOMEODOMAIN 7		 0.68 0.3 -0.32
37 AT1G50580 UDP-Glycosyltransferase superfamily protein -0.68 0.33 -0.34
38 AT1G10650 SBP (S-ribonuclease binding protein) family protein 0.67 0.33 -0.32
39 AT2G42750 DNAJ heat shock N-terminal domain-containing protein 0.67 0.32 -0.32
40 AT1G61040 plus-3 domain-containing protein vernalization independence 5 -0.67 0.31 -0.33
41 AT3G63010 alpha/beta-Hydrolases superfamily protein ATGID1B, GA INSENSITIVE DWARF1B -0.67 0.3 -0.32
42 AT3G04570 AT-hook motif nuclear-localized protein 19 AT-hook motif nuclear-localized
protein 19		 -0.67 0.33 -0.33
43 AT1G65450 HXXXD-type acyl-transferase family protein 0.67 0.31 -0.29
44 AT5G01840 ovate family protein 1 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 1, ovate family protein 1		 -0.67 0.31 -0.33
45 AT1G09380 nodulin MtN21 /EamA-like transporter family protein -0.66 0.33 -0.33
46 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 -0.66 0.33 -0.32
47 AT2G40600 appr-1-p processing enzyme family protein 0.66 0.31 -0.32
48 AT3G50850 Putative methyltransferase family protein -0.66 0.31 -0.33
49 AT1G66460 Protein kinase superfamily protein 0.66 0.33 -0.32
50 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 -0.66 0.32 -0.29
51 AT2G46950 cytochrome P450, family 709, subfamily B, polypeptide 2 cytochrome P450, family 709,
subfamily B, polypeptide 2		 -0.66 0.28 -0.34
52 AT3G43800 glutathione S-transferase tau 27 glutathione S-transferase tau 27,
glutathione S-transferase tau 27		 0.66 0.33 -0.31
53 AT2G32160 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.66 0.33 -0.32
54 AT3G02570 Mannose-6-phosphate isomerase, type I MATERNAL EFFECT EMBRYO ARREST 31,
PHOSPHOMANNOSE ISOMERASE 1		 0.66 0.29 -0.31
55 AT2G32280 Protein of unknown function (DUF1218) -0.66 0.29 -0.32
56 AT1G74810 HCO3- transporter family BOR5 0.65 0.33 -0.34
57 AT5G45970 RAC-like 2 Arabidopsis RAC-like 2,
ARABIDOPSIS THALIANA RAC 2,
RHO-RELATED PROTEIN FROM PLANTS 7,
RAC-like 2, ROP7		 0.65 0.34 -0.32
58 AT4G08150 KNOTTED-like from Arabidopsis thaliana BREVIPEDICELLUS, BREVIPEDICELLUS
1, KNOTTED-like from Arabidopsis
thaliana		 -0.65 0.32 -0.33
59 AT1G01380 Homeodomain-like superfamily protein ENHANCER OF TRY AND CPC 1 0.65 0.3 -0.31
60 AT2G37920 copper ion transmembrane transporters embryo defective 1513 0.65 0.31 -0.31
61 AT2G22680 Zinc finger (C3HC4-type RING finger) family protein WAV3 homolog 1 -0.65 0.34 -0.34
62 AT5G03420 5'-AMP-activated protein kinase-related 0.65 0.34 -0.32
63 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 -0.65 0.32 -0.3
64 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 -0.65 0.33 -0.3
65 AT2G41800 Protein of unknown function, DUF642 -0.65 0.31 -0.3
66 AT3G21720 isocitrate lyase isocitrate lyase -0.65 0.32 -0.3
67 AT5G33370 GDSL-like Lipase/Acylhydrolase superfamily protein 0.64 0.31 -0.34
68 AT2G38370 Plant protein of unknown function (DUF827) -0.64 0.29 -0.31
69 AT5G55720 Pectin lyase-like superfamily protein 0.64 0.3 -0.31
70 AT5G54040 Cysteine/Histidine-rich C1 domain family protein -0.64 0.31 -0.32
71 AT5G53450 OBP3-responsive gene 1 OBP3-responsive gene 1 0.64 0.33 -0.33
72 AT3G16440 myrosinase-binding protein-like protein-300B myrosinase-binding protein-like
protein-300B, maternal effect
embryo arrest 36,
myrosinase-binding protein-like
protein-300B		 -0.64 0.33 -0.3
73 AT5G65510 AINTEGUMENTA-like 7 AINTEGUMENTA-like 7, PLETHORA 7 -0.64 0.3 -0.31
74 AT5G52170 homeodomain GLABROUS 7 homeodomain GLABROUS 7 -0.64 0.33 -0.29
75 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 -0.64 0.3 -0.31
76 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 -0.64 0.31 -0.33
77 AT1G25460 NAD(P)-binding Rossmann-fold superfamily protein 0.64 0.32 -0.31
78 AT3G50420 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.3 -0.3
79 AT4G01900 GLNB1 homolog GLNB1 homolog, PII 0.64 0.3 -0.33
80 AT5G24660 response to low sulfur 2 RESPONSE TO LOW SULFUR 2 0.63 0.32 -0.33
81 AT5G05250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.63 0.31 -0.3
82 AT3G62100 indole-3-acetic acid inducible 30 indole-3-acetic acid inducible 30 -0.63 0.3 -0.33
83 AT4G30290 xyloglucan endotransglucosylase/hydrolase 19 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 19,
xyloglucan
endotransglucosylase/hydrolase 19		 -0.63 0.32 -0.32
84 AT3G02290 RING/U-box superfamily protein 0.63 0.32 -0.31
85 AT2G40880 cystatin A cystatin A, cystatin A, FL3-27 0.63 0.31 -0.31
86 AT1G79630 Protein phosphatase 2C family protein -0.63 0.29 -0.32
87 AT1G21740 Protein of unknown function (DUF630 and DUF632) -0.63 0.32 -0.32
88 AT3G13440 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.63 0.31 -0.32
89 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.32 -0.3
90 AT3G22070 proline-rich family protein 0.63 0.31 -0.32
91 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.63 0.3 -0.33
92 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 -0.63 0.32 -0.29
93 AT5G48120 ARM repeat superfamily protein -0.63 0.33 -0.32
94 AT2G37340 arginine/serine-rich zinc knuckle-containing protein 33 arginine/serine-rich zinc
knuckle-containing protein 33,
ARGININE/SERINE-RICH ZINC
KNUCKLE-CONTAINING PROTEIN 33,
arginine/serine-rich zinc
knuckle-containing protein 33,
arginine/serine-rich zinc
knuckle-containing protein 33		 -0.63 0.32 -0.3
95 AT2G44230 Plant protein of unknown function (DUF946) 0.62 0.31 -0.32
96 AT4G00520 Acyl-CoA thioesterase family protein 0.62 0.33 -0.29
97 AT4G39720 VQ motif-containing protein -0.62 0.32 -0.34
98 AT5G05130 DNA/RNA helicase protein -0.62 0.32 -0.34
99 AT5G04660 cytochrome P450, family 77, subfamily A, polypeptide 4 cytochrome P450, family 77,
subfamily A, polypeptide 4		 0.62 0.33 -0.32
100 AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.34 -0.31
101 AT4G28890 RING/U-box superfamily protein -0.62 0.29 -0.32
102 AT3G52900 Family of unknown function (DUF662) 0.62 0.31 -0.32
103 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 -0.62 0.31 -0.33
104 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 0.62 0.3 -0.31
105 AT5G01310 APRATAXIN-like APRATAXIN-like -0.62 0.33 -0.31
106 AT3G21420 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 LATERAL BRANCHING OXIDOREDUCTASE 1 -0.62 0.3 -0.31
107 AT3G09980 Family of unknown function (DUF662) 0.61 0.33 -0.32
108 AT2G18780 F-box and associated interaction domains-containing protein -0.61 0.32 -0.34
109 AT5G04630 cytochrome P450, family 77, subfamily A, polypeptide 9 cytochrome P450, family 77,
subfamily A, polypeptide 9		 0.61 0.3 -0.33
110 AT5G37980 Zinc-binding dehydrogenase family protein 0.61 0.35 -0.31
111 AT1G28650 GDSL-like Lipase/Acylhydrolase superfamily protein -0.61 0.3 -0.3
112 AT2G17300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast
hits to 42 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.33
113 AT1G09280 CONTAINS InterPro DOMAIN/s: Rhodanese-like
(InterPro:IPR001763), Serine hydrolase
(InterPro:IPR005645); BEST Arabidopsis thaliana protein
match is: Rhodanese/Cell cycle control phosphatase
superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits
to 5912 proteins in 1592 species: Archae - 0; Bacteria -
2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses -
0; Other Eukaryotes - 2186 (source: NCBI BLink).		 -0.61 0.33 -0.31
114 AT2G38110 glycerol-3-phosphate acyltransferase 6 GLYCEROL-3-PHOSPHATE
ACYLTRANSFERASE 6,
glycerol-3-phosphate
acyltransferase 6		 0.61 0.3 -0.34
115 AT1G55610 BRI1 like BRI1 like -0.61 0.32 -0.32
116 AT5G03670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits
to 624 proteins in 104 species: Archae - 0; Bacteria - 18;
Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other
Eukaryotes - 192 (source: NCBI BLink).		 -0.61 0.34 -0.32
117 AT1G49030 PLAC8 family protein -0.61 0.29 -0.32
118 AT4G08340 transposable element gene 0.61 0.31 -0.31
119 AT2G14960 Auxin-responsive GH3 family protein GH3.1 -0.6 0.34 -0.31
120 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 0.6 0.32 -0.33
121 AT4G15400 HXXXD-type acyl-transferase family protein -0.6 0.31 -0.31
122 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 0.6 0.3 -0.28
123 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 0.6 0.31 -0.31
124 AT4G36930 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 SPATULA -0.6 0.31 -0.32
125 AT2G04025 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 3 -0.6 0.31 -0.32
126 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 -0.6 0.33 -0.33
127 AT2G36930 zinc finger (C2H2 type) family protein -0.6 0.32 -0.31
128 AT5G63830 HIT-type Zinc finger family protein -0.6 0.33 -0.31
129 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 0.6 0.32 -0.32
130 AT4G32630 ArfGap/RecO-like zinc finger domain-containing protein 0.6 0.32 -0.34
131 AT4G25760 glutamine dumper 2 glutamine dumper 2, glutamine
dumper 2		 0.6 0.33 -0.3
132 AT1G50420 scarecrow-like 3 SCARECROW-LIKE 3, scarecrow-like 3 -0.6 0.32 -0.32
133 AT2G41070 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP12, DPBF4, ENHANCED EM LEVEL -0.6 0.33 -0.31
134 AT2G37410 translocase inner membrane subunit 17-2 translocase inner membrane subunit
17-2, TRANSLOCASE OF THE INNER
MEMBRANE 17, translocase inner
membrane subunit 17-2		 -0.59 0.29 -0.33
135 AT2G35920 RNA helicase family protein -0.59 0.28 -0.3
136 AT5G47680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA
(guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA
(guanine-N(1)-)-methyltransferase, metazoa
(InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase,
eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 AtTRM, tRNA modification 10 -0.59 0.31 -0.31
137 AT1G13590 phytosulfokine 1 precursor phytosulfokine 1 precursor,
phytosulfokine 1 precursor		 -0.59 0.32 -0.29
138 AT1G34110 Leucine-rich receptor-like protein kinase family protein -0.59 0.31 -0.31
139 AT1G53860 Remorin family protein -0.59 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
140 C0126 Isorhamnetin-dirhamnoside - - - -0.81 0.47 -0.46
141 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		-0.72 0.44 -0.45 C0012
142 C0162 MST_1588.3 - - - 0.69 0.43 -0.41