AT3G58975 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G58975
Description pseudogene of F-box family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G58975 pseudogene of F-box family protein 1 0.34 -0.32
2 AT1G74180 receptor like protein 14 receptor like protein 14, receptor
like protein 14		 0.84 0.3 -0.33
3 AT2G40020 Nucleolar histone methyltransferase-related protein 0.81 0.32 -0.33
4 AT5G51570 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 -0.8 0.3 -0.34
5 AT3G22420 with no lysine (K) kinase 2 ARABIDOPSIS THALIANA WITH NO K 2,
with no lysine (K) kinase 2, ZIK3		 0.79 0.33 -0.29
6 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 -0.79 0.35 -0.3
7 AT5G51830 pfkB-like carbohydrate kinase family protein -0.79 0.33 -0.32
8 AT5G44660 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits
to 462 proteins in 141 species: Archae - 2; Bacteria - 370;
Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other
Eukaryotes - 239 (source: NCBI BLink).		 0.78 0.34 -0.31
9 AT1G49180 protein kinase family protein 0.78 0.32 -0.31
10 AT3G19260 LAG1 homologue 2 LONGEVITY ASSURANCE GENE1 HOMOLOG
2, LAG1 homologue 2		 -0.77 0.33 -0.31
11 AT1G54390 PHD finger protein-related INHIBITOR OF GROWTH 2 0.77 0.31 -0.33
12 AT3G55630 DHFS-FPGS homolog D DHFS-FPGS homolog D, DHFS-FPGS
homolog D, folylpolyglutamate
synthetase 3		 0.76 0.3 -0.32
13 AT5G03340 ATPase, AAA-type, CDC48 protein -0.76 0.33 -0.33
14 AT4G32040 KNOTTED1-like homeobox gene 5 KNOTTED1-like homeobox gene 5 -0.76 0.32 -0.31
15 AT5G42780 homeobox protein 27 homeobox protein 27, homeobox
protein 27, ZINC FINGER
HOMEODOMAIN 13		 0.76 0.32 -0.31
16 AT5G54500 flavodoxin-like quinone reductase 1 flavodoxin-like quinone reductase
1		 -0.76 0.33 -0.3
17 AT2G39560 Putative membrane lipoprotein 0.75 0.32 -0.31
18 AT5G47920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.75 0.32 -0.31
19 AT5G59340 WUSCHEL related homeobox 2 WUSCHEL related homeobox 2 0.75 0.3 -0.34
20 AT5G22060 DNAJ homologue 2 ARABIDOPSIS THALIANA DNAJ
HOMOLOGUE 2, DNAJ homologue 2		 -0.75 0.3 -0.33
21 AT4G11600 glutathione peroxidase 6 glutathione peroxidase 6,
glutathione peroxidase 6, LSC803,
PHGPX		 -0.75 0.34 -0.32
22 AT2G04040 MATE efflux family protein ATDTX1, detoxification 1, TX1 -0.74 0.33 -0.31
23 AT2G27810 nucleobase-ascorbate transporter 12 ARABIDOPSIS NUCLEOBASE-ASCORBATE
TRANSPORTER 12,
nucleobase-ascorbate transporter
12		 0.74 0.28 -0.31
24 AT1G31280 Argonaute family protein argonaute 2 -0.74 0.31 -0.3
25 AT5G42150 Glutathione S-transferase family protein -0.74 0.32 -0.31
26 AT3G03950 evolutionarily conserved C-terminal region 1 evolutionarily conserved
C-terminal region 1		 -0.74 0.31 -0.33
27 AT1G16210 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1014 (InterPro:IPR010422); Has 16107
Blast hits to 8386 proteins in 1107 species: Archae - 26;
Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants -
526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI
BLink).		 -0.74 0.27 -0.32
28 AT1G68190 B-box zinc finger family protein 0.73 0.31 -0.32
29 AT1G21560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G01170.1); Has 76 Blast hits
to 76 proteins in 15 species: Archae - 0; Bacteria - 4;
Metazoa - 3; Fungi - 2; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.31 -0.31
30 AT5G56350 Pyruvate kinase family protein -0.73 0.31 -0.32
31 AT3G13030 hAT transposon superfamily protein 0.73 0.3 -0.32
32 AT2G26990 proteasome family protein ATCSN2, CONSTITUTIVE
PHOTOMORPHOGENIC 12, CSN2, FUSCA
12		 -0.73 0.32 -0.31
33 AT5G04170 Calcium-binding EF-hand family protein -0.73 0.32 -0.31
34 AT1G67080 abscisic acid (aba)-deficient 4 abscisic acid (ABA)-deficient 4 0.72 0.32 -0.31
35 AT5G52240 membrane steroid binding protein 1 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 5, ATMP1, membrane
steroid binding protein 1		 -0.72 0.3 -0.32
36 AT4G32980 homeobox gene 1 homeobox gene 1 0.72 0.33 -0.32
37 AT5G58290 regulatory particle triple-A ATPase 3 regulatory particle triple-A
ATPase 3		 -0.72 0.34 -0.29
38 AT3G48190 ataxia-telangiectasia mutated ARABIDOPSIS THALIANA
ATAXIA-TELANGIECTASIA MUTATED,
ataxia-telangiectasia mutated, pcd
in male gametogenesis 1		 0.72 0.34 -0.34
39 AT3G46460 ubiquitin-conjugating enzyme 13 ubiquitin-conjugating enzyme 13 -0.72 0.33 -0.33
40 AT2G29300 NAD(P)-binding Rossmann-fold superfamily protein 0.72 0.31 -0.3
41 AT3G49500 RNA-dependent RNA polymerase 6 RNA-dependent RNA polymerase 6,
SILENCING DEFECTIVE 1, SUPPRESSOR
OF GENE SILENCING 2		 0.72 0.32 -0.33
42 AT4G27320 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS34, PHOS34 -0.72 0.29 -0.31
43 AT2G20850 STRUBBELIG-receptor family 1 STRUBBELIG-receptor family 1 0.72 0.31 -0.31
44 AT4G19540 IND1(iron-sulfur protein required for NADH
dehydrogenase)-like		 iron-sulfur protein required for
NADH dehydrogenase,
IND1(iron-sulfur protein required
for NADH dehydrogenase)-like		 0.71 0.31 -0.31
45 AT3G52870 IQ calmodulin-binding motif family protein -0.71 0.31 -0.34
46 AT3G27570 Sucrase/ferredoxin-like family protein -0.71 0.29 -0.32
47 AT1G65010 Plant protein of unknown function (DUF827) 0.71 0.33 -0.3
48 AT5G24460 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.34 -0.29
49 AT4G24550 Clathrin adaptor complexes medium subunit family protein -0.71 0.33 -0.3
50 AT2G03510 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 -0.71 0.3 -0.32
51 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.71 0.29 -0.33
52 AT3G26890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G41110.1); Has 393 Blast hits
to 383 proteins in 134 species: Archae - 0; Bacteria - 61;
Metazoa - 171; Fungi - 74; Plants - 80; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.71 0.31 -0.33
53 AT5G52200 phosphoprotein phosphatase inhibitors AtI-2, inhibitor-2 -0.71 0.31 -0.31
54 AT5G16840 binding partner of acd11 1 binding partner of acd11 1 -0.71 0.32 -0.3
55 AT1G76110 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 0.71 0.34 -0.3
56 AT3G57190 peptide chain release factor, putative peptide chain release factor 3 0.71 0.34 -0.32
57 AT5G47200 RAB GTPase homolog 1A RAB GTPase homolog 1A, ARABIDOPSIS
RAB GTPASE HOMOLOG D2B, RAB GTPase
homolog 1A		 -0.71 0.3 -0.28
58 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.32 -0.3
59 AT1G77400 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana
protein match is: hydroxyproline-rich glycoprotein family
protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314
proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa
- 130; Fungi - 28; Plants - 92; Viruses - 10; Other
Eukaryotes - 56 (source: NCBI BLink).		 0.7 0.33 -0.3
60 AT5G40470 RNI-like superfamily protein 0.7 0.3 -0.32
61 AT5G10030 TGACG motif-binding factor 4 OCS ELEMENT BINDING FACTOR 4,
TGACG motif-binding factor 4		 0.7 0.32 -0.32
62 AT3G46290 hercules receptor kinase 1 hercules receptor kinase 1 -0.7 0.29 -0.32
63 AT4G15470 Bax inhibitor-1 family protein -0.7 0.32 -0.31
64 AT2G17640 Trimeric LpxA-like enzymes superfamily protein ATSERAT3;1, SERINE
ACETYLTRANSFERASE 106		 0.7 0.3 -0.32
65 AT4G10140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF2062 (InterPro:IPR018639); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.7 0.31 -0.34
66 AT1G01730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 42 Blast hits to 42 proteins
in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi
- 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.7 0.32 -0.31
67 AT2G35790 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1301 (InterPro:IPR009724); Has 116
Blast hits to 116 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink).		 -0.7 0.31 -0.32
68 AT2G17980 Sec1/munc18-like (SM) proteins superfamily ATSLY1 -0.7 0.33 -0.32
69 AT2G36300 Integral membrane Yip1 family protein -0.7 0.31 -0.34
70 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 -0.7 0.32 -0.31
71 AT1G18390 Protein kinase superfamily protein -0.7 0.29 -0.3
72 AT3G11620 alpha/beta-Hydrolases superfamily protein 0.7 0.31 -0.32
73 AT5G22300 nitrilase 4 NITRILASE 4, nitrilase 4 -0.7 0.33 -0.32
74 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5		 -0.7 0.31 -0.3
75 AT5G42790 proteasome alpha subunit F1 ARSENIC TOLERANCE 5, ATPSM30,
proteasome alpha subunit F1		 -0.7 0.32 -0.33
76 AT5G18800 Cox19-like CHCH family protein -0.7 0.3 -0.33
77 AT2G47970 Nuclear pore localisation protein NPL4 -0.7 0.29 -0.33
78 AT5G58640 Selenoprotein, Rdx type -0.7 0.32 -0.31
79 AT5G50960 nucleotide binding protein 35 NUCLEOTIDE BINDING PROTEIN 35,
nucleotide binding protein 35		 -0.7 0.3 -0.33
80 AT3G53240 receptor like protein 45 receptor like protein 45, receptor
like protein 45		 0.69 0.34 -0.32
81 AT2G17280 Phosphoglycerate mutase family protein -0.69 0.3 -0.31
82 AT3G47120 RNA recognition motif (RRM)-containing protein -0.69 0.32 -0.3
83 AT1G73730 ETHYLENE-INSENSITIVE3-like 3 AtEIL3, ARABIDOPSIS THALIANA
SULFUR LIMITATION 1,
ETHYLENE-INSENSITIVE3-like 3,
SULFUR LIMITATION 1		 -0.69 0.31 -0.33
84 AT2G22980 serine carboxypeptidase-like 13 serine carboxypeptidase-like 13 0.69 0.3 -0.33
85 AT1G30890 Integral membrane HRF1 family protein -0.69 0.31 -0.32
86 AT1G23780 F-box family protein -0.69 0.32 -0.32
87 AT1G26830 cullin 3 cullin 3, cullin 3A, cullin 3,
cullin 3A		 -0.69 0.31 -0.33
88 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.69 0.3 -0.3
89 AT1G59710 Protein of unknown function (DUF569) -0.69 0.33 -0.33
90 AT4G22570 adenine phosphoribosyl transferase 3 adenine phosphoribosyl transferase
3		 0.69 0.32 -0.33
91 AT4G23040 Ubiquitin-like superfamily protein -0.69 0.3 -0.31
92 AT2G37250 adenosine kinase adenosine kinase, ATPADK1 -0.69 0.31 -0.32
93 AT1G30550 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.69 0.34 -0.33
94 AT3G51760 Protein of unknown function (DUF688) -0.69 0.29 -0.31
95 AT3G09410 Pectinacetylesterase family protein 0.69 0.3 -0.31
96 AT5G13980 Glycosyl hydrolase family 38 protein 0.69 0.3 -0.32
97 AT5G38140 nuclear factor Y, subunit C12 nuclear factor Y, subunit C12 0.69 0.3 -0.32
98 AT4G11740 Ubiquitin-like superfamily protein SAY1 -0.69 0.31 -0.31
99 AT5G35735 Auxin-responsive family protein -0.69 0.31 -0.32
100 AT5G35680 Nucleic acid-binding, OB-fold-like protein -0.68 0.32 -0.31
101 AT2G18730 diacylglycerol kinase 3 ATDGK3, diacylglycerol kinase 3 -0.68 0.32 -0.31
102 AT4G29040 regulatory particle AAA-ATPase 2A regulatory particle AAA-ATPase 2A -0.68 0.34 -0.31
103 AT1G63100 GRAS family transcription factor 0.68 0.29 -0.3
104 AT1G18480 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP2, Shewenella-like protein
phosphatase 2		 -0.68 0.32 -0.31
105 AT2G20420 ATP citrate lyase (ACL) family protein -0.68 0.32 -0.31
106 AT4G31340 myosin heavy chain-related -0.68 0.34 -0.31
107 AT3G51790 transmembrane protein G1P-related 1 transmembrane protein G1P-related
1, transmembrane protein
G1P-related 1		 -0.68 0.32 -0.32
108 AT3G17410 Protein kinase superfamily protein -0.68 0.34 -0.3
109 AT5G15170 tyrosyl-DNA phosphodiesterase-related tyrosyl-DNA phosphodiesterase 1 0.68 0.32 -0.32
110 AT3G09350 Fes1A Fes1A -0.68 0.32 -0.3
111 AT2G38610 RNA-binding KH domain-containing protein -0.68 0.32 -0.32
112 AT1G64740 alpha-1 tubulin alpha-1 tubulin -0.68 0.32 -0.31
113 AT4G37120 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 2 -0.68 0.3 -0.31
114 AT1G52730 Transducin/WD40 repeat-like superfamily protein -0.68 0.31 -0.32
115 AT4G01330 Protein kinase superfamily protein 0.68 0.31 -0.29
116 AT1G16070 tubby like protein 8 tubby like protein 8, tubby like
protein 8		 0.68 0.31 -0.3
117 AT4G22540 OSBP(oxysterol binding protein)-related protein 2A OSBP(oxysterol binding
protein)-related protein 2A		 0.68 0.29 -0.32
118 AT3G08710 thioredoxin H-type 9 thioredoxin H-type 9, thioredoxin
H-type 9, THIOREDOXIN TYPE H 9		 -0.68 0.33 -0.32
119 AT1G43860 sequence-specific DNA binding transcription factors -0.67 0.32 -0.34
120 AT2G37550 ARF-GAP domain 7 ARF-GAP domain 7, yeast pde1
suppressor 1		 -0.67 0.32 -0.31
121 AT4G04950 thioredoxin family protein Arabidopsis thaliana monothiol
glutaredoxin 17, monothiol
glutaredoxin 17		 -0.67 0.31 -0.3
122 AT4G11220 VIRB2-interacting protein 2 VIRB2-interacting protein 2,
Reticulan like protein B2		 -0.67 0.31 -0.3
123 AT5G19000 BTB-POZ and MATH domain 1 BTB-POZ AND MATH DOMAIN 1, BTB-POZ
and MATH domain 1		 -0.67 0.3 -0.31
124 AT3G07480 2Fe-2S ferredoxin-like superfamily protein -0.67 0.33 -0.3
125 AT3G46130 myb domain protein 48 myb domain protein 48, ATMYB48-1,
ATMYB48-2, ATMYB48-3, myb domain
protein 48		 0.67 0.32 -0.3
126 AT2G17970 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.67 0.32 -0.31
127 AT4G12230 alpha/beta-Hydrolases superfamily protein -0.67 0.32 -0.32
128 AT3G26020 Protein phosphatase 2A regulatory B subunit family protein -0.67 0.33 -0.32
129 AT1G01310 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.67 0.31 -0.31
130 AT2G45100 Cyclin/Brf1-like TBP-binding protein 0.67 0.33 -0.32