AT3G58460 : RHOMBOID-like protein 15
Query Information
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AGICode AT3G58460
Description RHOMBOID-like protein 15
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G58460 RHOMBOID-like protein 15 RHOMBOID-like protein 15,
RHOMBOID-like protein 15		 1 0.33 -0.31
2 AT2G38360 prenylated RAB acceptor 1.B4 prenylated RAB acceptor 1.B4 0.82 0.32 -0.32
3 AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBB1 0.82 0.28 -0.31
4 AT2G17380 associated protein 19 associated protein 19 0.81 0.32 -0.31
5 AT3G11780 MD-2-related lipid recognition domain-containing protein /
ML domain-containing protein		 0.81 0.32 -0.32
6 AT3G02580 sterol 1 BOULE 1, DWARF 7, sterol 1 0.81 0.31 -0.3
7 AT2G25310 Protein of unknown function (DUF2012) 0.81 0.32 -0.31
8 AT5G52210 GTP-binding protein 1 ATARLB1, GTP-binding protein 1,
GTP-binding protein 1		 0.79 0.31 -0.3
9 AT2G18770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.31 -0.33
10 AT1G20575 Nucleotide-diphospho-sugar transferases superfamily protein dolichol phosphate mannose
synthase 1		 0.79 0.32 -0.33
11 AT2G42680 multiprotein bridging factor 1A ARABIDOPSIS THALIANA MULTIPROTEIN
BRIDGING FACTOR 1A, multiprotein
bridging factor 1A		 0.78 0.28 -0.3
12 AT1G21720 proteasome beta subunit C1 proteasome beta subunit C1 0.78 0.34 -0.31
13 AT3G11270 Mov34/MPN/PAD-1 family protein maternal effect embryo arrest 34 0.77 0.3 -0.3
14 AT5G11680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, plasma
membrane; EXPRESSED IN: 26 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
WW-domain-binding protein (InterPro:IPR018826); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.77 0.33 -0.32
15 AT3G20800 Cell differentiation, Rcd1-like protein 0.76 0.29 -0.32
16 AT3G55770 GATA type zinc finger transcription factor family protein WLIM2b 0.76 0.32 -0.32
17 AT5G40660 ATP12 protein-related 0.75 0.3 -0.32
18 AT1G26300 BSD domain-containing protein 0.75 0.3 -0.31
19 AT1G22300 general regulatory factor 10 14-3-3 PROTEIN G-BOX FACTOR14
EPSILON, GF14 EPSILON, general
regulatory factor 10		 0.75 0.31 -0.34
20 AT3G60820 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBF1 0.75 0.31 -0.32
21 AT3G55140 Pectin lyase-like superfamily protein 0.75 0.3 -0.32
22 AT3G17100 sequence-specific DNA binding transcription factors 0.74 0.31 -0.34
23 AT2G38480 Uncharacterised protein family (UPF0497) 0.74 0.3 -0.32
24 AT3G60400 Mitochondrial transcription termination factor family
protein		 -0.74 0.3 -0.3
25 AT1G20150 Subtilisin-like serine endopeptidase family protein -0.74 0.33 -0.31
26 AT4G17170 RAB GTPase homolog B1C AT-RAB2, ARABIDOPSIS RAB GTPASE
HOMOLOG B1B, ATRAB2A, ATRABB1C,
RAB GTPASE HOMOLOG B1B, RAB2A, RAB
GTPase homolog B1C		 0.74 0.29 -0.31
27 AT5G20090 Uncharacterised protein family (UPF0041) 0.73 0.32 -0.31
28 AT5G20650 copper transporter 5 copper transporter 5 0.73 0.32 -0.32
29 AT2G19790 SNARE-like superfamily protein 0.73 0.32 -0.32
30 AT5G54430 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS32, PHOS32 0.73 0.31 -0.3
31 AT4G08930 APR-like 6 APR-like 6, APR-like 6 0.73 0.33 -0.32
32 AT4G20410 gamma-soluble NSF attachment protein GAMMA-SOLUBLE NSF ATTACHMENT
PROTEIN, gamma-soluble NSF
attachment protein		 0.72 0.3 -0.32
33 AT2G19560 proteasome family protein AtTHP1, ENHANCED ETHYLENE RESPONSE
5, ectopic expression of seed
storage proteins 1		 0.72 0.31 -0.33
34 AT5G58060 SNARE-like superfamily protein ATGP1, ATYKT61, YKT61 0.72 0.34 -0.31
35 AT4G25770 alpha/beta-Hydrolases superfamily protein 0.71 0.32 -0.33
36 AT5G27940 WPP domain protein 3 WPP domain protein 3 -0.71 0.32 -0.31
37 AT5G63870 serine/threonine phosphatase 7 ATPP7, serine/threonine
phosphatase 7		 0.71 0.34 -0.33
38 AT5G53310 myosin heavy chain-related 0.71 0.3 -0.33
39 AT1G61780 postsynaptic protein-related 0.71 0.31 -0.33
40 AT4G27690 vacuolar protein sorting 26B vacuolar protein sorting 26B 0.71 0.31 -0.29
41 AT5G13610 Protein of unknown function (DUF155) 0.71 0.32 -0.31
42 AT3G55460 SC35-like splicing factor 30 SC35-like splicing factor 30,
SC35-like splicing factor 30		 0.71 0.29 -0.3
43 AT2G01710 Chaperone DnaJ-domain superfamily protein 0.71 0.31 -0.3
44 AT4G38930 Ubiquitin fusion degradation UFD1 family protein 0.71 0.32 -0.32
45 AT5G38470 Rad23 UV excision repair protein family RADIATION SENSITIVE23D 0.71 0.3 -0.3
46 AT2G21600 endoplasmatic reticulum retrieval protein 1B endoplasmatic reticulum retrieval
protein 1B, endoplasmatic
reticulum retrieval protein 1B		 0.71 0.32 -0.32
47 AT2G30930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane, membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G06540.1); Has 194 Blast hits to 176 proteins in
78 species: Archae - 0; Bacteria - 101; Metazoa - 15; Fungi
- 25; Plants - 12; Viruses - 4; Other Eukaryotes - 37
(source: NCBI BLink).		 0.7 0.32 -0.32
48 AT2G47550 Plant invertase/pectin methylesterase inhibitor superfamily 0.7 0.31 -0.32
49 AT2G06310 transposable element gene 0.7 0.32 -0.32
50 AT1G61930 Protein of unknown function, DUF584 -0.7 0.32 -0.32
51 AT1G18680 HNH endonuclease domain-containing protein 0.7 0.32 -0.33
52 AT1G68480 C2H2 and C2HC zinc fingers superfamily protein JAGGED -0.7 0.31 -0.3
53 AT5G58240 FRAGILE HISTIDINE TRIAD FRAGILE HISTIDINE TRIAD 0.69 0.32 -0.33
54 AT4G36750 Quinone reductase family protein 0.69 0.3 -0.3
55 AT1G50670 OTU-like cysteine protease family protein 0.69 0.3 -0.31
56 AT5G04880 pseudogene of ABC transporter family protein -0.69 0.32 -0.31
57 AT2G43790 MAP kinase 6 MAP kinase 6, MAP kinase 6, MAP
kinase 6, MAP kinase 6		 0.69 0.31 -0.32
58 AT1G68680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 16 growth stages; Has 20 Blast hits to 20 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.69 0.31 -0.31
59 AT1G17090 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast
hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.33 -0.32
60 AT2G44620 mitochondrial acyl carrier protein 1 mitochondrial acyl carrier protein
1, MITOCHONDRIAL ACYL CARRIER
PROTEIN 1		 0.69 0.33 -0.31
61 AT1G79880 RNA recognition motif (RRM)-containing protein -0.69 0.34 -0.33
62 AT5G11500 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF814 (InterPro:IPR008532); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.69 0.3 -0.32
63 AT4G08490 transposable element gene -0.69 0.33 -0.32
64 AT3G25560 NSP-interacting kinase 2 NSP-interacting kinase 2 -0.68 0.32 -0.33
65 AT2G30920 coenzyme Q 3 coenzyme Q 3, COQ3, coenzyme Q 3,
embryo defective 3002		 0.68 0.31 -0.32
66 AT3G57480 zinc finger (C2H2 type, AN1-like) family protein 0.68 0.33 -0.32
67 AT1G64860 sigma factor A RPOD1, RNA POLYMERASE SIGMA
SUBUNIT 1, RNApolymerase sigma
subunit 2, sigma factor A, SIGB		 -0.68 0.32 -0.31
68 AT3G02810 Protein kinase superfamily protein 0.68 0.32 -0.32
69 AT3G52300 ATP synthase D chain, mitochondrial ATP synthase D chain,
mitochondrial		 0.68 0.32 -0.31
70 AT4G11440 Mitochondrial substrate carrier family protein -0.67 0.31 -0.29
71 AT5G41080 PLC-like phosphodiesterases superfamily protein AtGDPD2, glycerophosphodiester
phosphodiesterase 2		 0.67 0.31 -0.32
72 AT5G65710 HAESA-like 2 HAESA-like 2 -0.67 0.32 -0.34
73 AT4G01850 S-adenosylmethionine synthetase 2 AtSAM2, MAT2, S-adenosylmethionine
synthetase 2, S-ADENOSYLMETHIONINE
SYNTHETASE 2		 0.67 0.31 -0.32
74 AT1G11890 Synaptobrevin family protein SECRETION 22, SECRETION 22 0.67 0.31 -0.32
75 AT3G11730 Ras-related small GTP-binding family protein ATFP8, ARABIDOPSIS THALIANA RAB
GTPASE HOMOLOG D1, RAB GTPASE
HOMOLOG D1		 0.67 0.34 -0.32
76 AT2G21480 Malectin/receptor-like protein kinase family protein -0.67 0.32 -0.32
77 AT1G02130 RAS 5 RAS 5, ARABIDOPSIS RAS 5,
ARABIDOPSIS THALIANA RESPONSIVE TO
ABSCISIC ACID 1B, ARABIDOPSIS
THALIANA RAB D2A, RAS 5, RAB D2A		 0.67 0.32 -0.31
78 AT1G22290 14-3-3 family protein -0.66 0.33 -0.31
79 AT1G53160 squamosa promoter binding protein-like 4 squamosa promoter binding
protein-like 4		 -0.66 0.3 -0.3
80 AT5G52250 Transducin/WD40 repeat-like superfamily protein EARLY FLOWERING BY OVEREXPRESSION
1, REPRESSOR OF UV-B
PHOTOMORPHOGENESIS 1		 0.66 0.31 -0.29
81 AT5G51700 protein binding;zinc ion binding ATRAR1, PPHB SUSCEPTIBLE 2,
Required for Mla12 resistance 1,
RPR2		 0.66 0.33 -0.32
82 AT1G06060 LisH and RanBPM domains containing protein 0.66 0.3 -0.31
83 AT1G60430 actin-related protein C3 actin-related protein C3 0.66 0.32 -0.32
84 AT1G70460 root hair specific 10 proline-rich extensin-like
receptor kinase 13, proline-rich
extensin-like receptor kinase 13,
root hair specific 10		 0.66 0.32 -0.33
85 AT3G50210 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.66 0.33 -0.31
86 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.66 0.32 -0.32
87 AT1G50910 unknown protein; Has 1105 Blast hits to 802 proteins in 217
species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi -
210; Plants - 58; Viruses - 6; Other Eukaryotes - 207
(source: NCBI BLink).		 -0.65 0.33 -0.3
88 AT5G03680 Duplicated homeodomain-like superfamily protein PETAL LOSS -0.65 0.32 -0.31
89 AT5G03060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11100.2); Has 14506 Blast
hits to 10808 proteins in 1083 species: Archae - 280;
Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants - 571;
Viruses - 106; Other Eukaryotes - 5165 (source: NCBI
BLink).		 -0.65 0.31 -0.33
90 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.65 0.34 -0.32
91 AT3G26160 cytochrome P450, family 71, subfamily B, polypeptide 17 cytochrome P450, family 71,
subfamily B, polypeptide 17		 -0.65 0.3 -0.34
92 AT5G35420 transposable element gene -0.64 0.32 -0.3
93 AT1G07990 SIT4 phosphatase-associated family protein -0.64 0.33 -0.31
94 AT3G18100 myb domain protein 4r1 myb domain protein 4R1, myb domain
protein 4r1		 -0.64 0.34 -0.33
95 AT5G53190 Nodulin MtN3 family protein AtSWEET3, SWEET3 -0.64 0.32 -0.32
96 AT1G19060 Protein of unknown function (DUF626) -0.64 0.31 -0.32
97 AT1G14480 Ankyrin repeat family protein -0.64 0.31 -0.3
98 AT3G26870 Plant self-incompatibility protein S1 family -0.64 0.34 -0.31
99 AT2G39710 Eukaryotic aspartyl protease family protein -0.64 0.31 -0.3
100 AT4G13420 high affinity K+ transporter 5 ARABIDOPSIS THALIANA HIGH AFFINITY
K+ TRANSPORTER 5, high affinity K+
transporter 5		 -0.63 0.3 -0.31
101 AT1G11060 WAPL (Wings apart-like protein regulation of
heterochromatin) protein		 -0.63 0.33 -0.31
102 AT4G23493 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.32 -0.29
103 AT1G15460 HCO3- transporter family ARABIDOPSIS THALIANA REQUIRES HIGH
BORON 4, REQUIRES HIGH BORON 4		 -0.63 0.33 -0.3
104 AT5G07880 synaptosomal-associated protein SNAP25-like 29 ARABIDOPSIS THALIANA
SYNAPTOSOMAL-ASSOCIATED PROTEIN
SNAP25-LIKE 29,
synaptosomal-associated protein
SNAP25-like 29		 -0.63 0.31 -0.34
105 AT3G61170 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.31 -0.3
106 AT5G39700 myb domain protein 89 myb domain protein 89, myb domain
protein 89		 -0.62 0.33 -0.31
107 AT1G29200 O-fucosyltransferase family protein -0.62 0.32 -0.32
108 AT2G38590 F-box and associated interaction domains-containing protein -0.62 0.32 -0.32
109 AT4G19470 Leucine-rich repeat (LRR) family protein -0.62 0.32 -0.31
110 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 -0.62 0.3 -0.31
111 AT5G62770 Protein of unknown function (DUF1645) -0.62 0.32 -0.32
112 AT5G59430 telomeric repeat binding protein 1 TELOMERE REPEAT BINDING PROTEIN 1,
telomeric repeat binding protein 1		 -0.61 0.32 -0.34
113 AT4G03580 BEST Arabidopsis thaliana protein match is: Cysteine
proteinases superfamily protein (TAIR:AT5G17080.1); Has 155
Blast hits to 136 proteins in 31 species: Archae - 0;
Bacteria - 11; Metazoa - 28; Fungi - 14; Plants - 17;
Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).		 -0.61 0.3 -0.3
114 AT4G00970 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 cysteine-rich RLK (RECEPTOR-like
protein kinase) 41		 -0.61 0.29 -0.32
115 AT4G31950 cytochrome P450, family 82, subfamily C, polypeptide 3 cytochrome P450, family 82,
subfamily C, polypeptide 3		 -0.61 0.32 -0.31
116 AT3G28590 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G79170.1); Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.61 0.32 -0.31
117 AT3G18120 F-box associated ubiquitination effector family protein -0.61 0.33 -0.34
118 AT4G23870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G11020.1); Has 12 Blast hits
to 12 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.3
119 AT4G03700 transposable element gene -0.6 0.32 -0.3
120 AT2G10050 transposable element gene -0.6 0.33 -0.3
121 AT3G12830 SAUR-like auxin-responsive protein family -0.6 0.32 -0.3
122 AT3G49760 basic leucine-zipper 5 basic leucine-zipper 5, basic
leucine-zipper 5		 -0.59 0.33 -0.31
123 AT5G11570 Major facilitator superfamily protein -0.59 0.32 -0.32
124 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 -0.59 0.33 -0.3
125 AT1G53270 ABC-2 type transporter family protein ATP-binding cassette G10 -0.59 0.32 -0.32
126 AT3G61940 Cation efflux family protein ATMTPA1, MTPA1 -0.59 0.32 -0.34
127 AT2G24255 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast hits to
121 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.31 -0.33
128 AT1G49030 PLAC8 family protein -0.59 0.3 -0.3
129 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.32 -0.33
130 AT4G01440 nodulin MtN21 /EamA-like transporter family protein -0.58 0.31 -0.31
131 AT2G17650 AMP-dependent synthetase and ligase family protein -0.58 0.3 -0.31
132 AT1G70650 Ran BP2/NZF zinc finger-like superfamily protein -0.58 0.35 -0.31
133 AT3G24790 Protein kinase superfamily protein -0.58 0.34 -0.3
134 AT1G77230 Tetratricopeptide repeat (TPR)-like superfamily protein -0.58 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
135 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate 0.72 0.45 -0.45 C0136