AT3G57890 : -
Query Information
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AGICode AT3G57890
Description Tubulin binding cofactor C domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G57890 Tubulin binding cofactor C domain-containing protein 1 0.31 -0.32
2 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 0.84 0.32 -0.31
3 AT2G21390 Coatomer, alpha subunit 0.79 0.32 -0.31
4 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.77 0.31 -0.31
5 AT5G10840 Endomembrane protein 70 protein family 0.77 0.31 -0.32
6 AT4G33650 dynamin-related protein 3A ARABIDOPSIS DYNAMIN-LIKE 2,
ABERRANT PEROXISOME MORPHOLOGY 1,
dynamin-related protein 3A		 0.76 0.3 -0.32
7 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.76 0.32 -0.32
8 AT4G32410 cellulose synthase 1 CELLULOSE SYNTHASE 1, cellulose
synthase 1, RADIALLY SWOLLEN 1		 0.75 0.34 -0.33
9 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.75 0.3 -0.33
10 AT2G32730 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 0.75 0.32 -0.3
11 AT1G22730 MA3 domain-containing protein 0.74 0.32 -0.34
12 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.74 0.32 -0.33
13 AT3G61240 DEA(D/H)-box RNA helicase family protein 0.74 0.32 -0.31
14 AT2G16920 ubiquitin-conjugating enzyme 23 PHO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 2, ubiquitin-conjugating
enzyme 23		 0.74 0.3 -0.33
15 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.74 0.33 -0.32
16 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 0.73 0.31 -0.31
17 AT1G53500 NAD-dependent epimerase/dehydratase family protein ARABIDOPSIS THALIANA
MUCILAGE-MODIFIED 4, ARABIDOPSIS
THALIANA RHAMNOSE BIOSYNTHESIS 2,
MUCILAGE-MODIFIED 4, RHAMNOSE
BIOSYNTHESIS 2		 0.73 0.29 -0.31
18 AT2G28520 vacuolar proton ATPase A1 vacuolar proton ATPase A1 0.73 0.32 -0.32
19 AT3G23820 UDP-D-glucuronate 4-epimerase 6 UDP-D-glucuronate 4-epimerase 6 0.73 0.33 -0.31
20 AT5G64740 cellulose synthase 6 cellulose synthase 6, E112,
ISOXABEN RESISTANT 2, PROCUSTE 1		 0.72 0.32 -0.32
21 AT3G26370 O-fucosyltransferase family protein 0.72 0.32 -0.32
22 AT4G14360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.31 -0.31
23 AT3G27390 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast
hits to 99 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.3 -0.32
24 AT3G12050 Aha1 domain-containing protein 0.71 0.32 -0.31
25 AT1G09620 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 0.71 0.31 -0.31
26 AT3G43300 HOPM interactor 7 HOPM interactor 7, BFA-VISUALIZED
ENDOCYTIC TRAFFICKING DEFECTIVE1		 0.71 0.33 -0.33
27 AT2G36480 ENTH/VHS family protein 0.7 0.31 -0.31
28 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.7 0.3 -0.31
29 AT1G20960 U5 small nuclear ribonucleoprotein helicase, putative embryo defective 1507 0.7 0.33 -0.32
30 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.7 0.33 -0.32
31 AT1G24440 RING/U-box superfamily protein -0.7 0.31 -0.31
32 AT4G19120 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 early-responsive to dehydration 3 0.7 0.31 -0.31
33 AT5G44280 RING 1A ARABIDOPSIS THALIANA RING 1A, RING
1A		 0.69 0.31 -0.31
34 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 -0.69 0.31 -0.35
35 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.69 0.32 -0.31
36 AT4G14060 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.69 0.32 -0.31
37 AT4G20400 JUMONJI 14 JUMONJI 14, PKDM7B 0.69 0.32 -0.33
38 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.69 0.31 -0.31
39 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.69 0.33 -0.32
40 AT2G41960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G58050.1); Has 11991 Blast
hits to 7260 proteins in 458 species: Archae - 17; Bacteria
- 481; Metazoa - 5028; Fungi - 1325; Plants - 615; Viruses
- 38; Other Eukaryotes - 4487 (source: NCBI BLink).		 0.69 0.32 -0.33
41 AT3G10650 BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI
BLink).		 AtNUP1, NUP1 0.69 0.29 -0.33
42 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.69 0.31 -0.32
43 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.3 -0.32
44 AT1G33250 Protein of unknown function (DUF604) 0.69 0.32 -0.3
45 AT1G10290 dynamin-like protein 6 dynamin-like protein 6,
DYNAMIN-RELATED PROTEIN 2A		 0.68 0.31 -0.3
46 AT2G40400 Protein of unknown function (DUF399 and DUF3411) 0.68 0.32 -0.29
47 AT5G38840 SMAD/FHA domain-containing protein 0.68 0.33 -0.29
48 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.68 0.34 -0.31
49 AT5G06970 Protein of unknown function (DUF810) 0.68 0.32 -0.31
50 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.67 0.33 -0.33
51 AT5G64290 dicarboxylate transport 2.1 DCT, dicarboxylate transport 2.1 0.67 0.33 -0.32
52 AT5G49530 SIN-like family protein 0.67 0.31 -0.32
53 AT3G07060 NHL domain-containing protein embryo defective 1974 0.67 0.33 -0.29
54 AT3G15760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.32 -0.32
55 AT5G39500 GNOM-like 1 ENDOPLASMIC RETICULUM MORPHOLOGY
1, GNOM-like 1		 0.67 0.31 -0.32
56 AT3G47520 malate dehydrogenase malate dehydrogenase, plastidic
NAD-dependent malate dehydrogenase		 0.66 0.32 -0.32
57 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 0.66 0.33 -0.32
58 AT2G42520 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.31 -0.32
59 AT2G15230 lipase 1 lipase 1, lipase 1 -0.66 0.33 -0.31
60 AT5G53220 unknown protein; Has 3099 Blast hits to 2528 proteins in
332 species: Archae - 2; Bacteria - 245; Metazoa - 1059;
Fungi - 555; Plants - 177; Viruses - 49; Other Eukaryotes -
1012 (source: NCBI BLink).		 -0.66 0.31 -0.3
61 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.31 -0.31
62 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 -0.66 0.33 -0.33
63 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.66 0.31 -0.32
64 AT1G34550 Protein of unknown function (DUF616) EMBRYO DEFECTIVE 2756 0.66 0.32 -0.32
65 AT5G16300 Vps51/Vps67 family (components of vesicular transport)
protein		 0.66 0.31 -0.31
66 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 0.66 0.31 -0.32
67 AT3G23900 RNA recognition motif (RRM)-containing protein 0.65 0.31 -0.34
68 AT5G10630 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.65 0.31 -0.33
69 AT1G15010 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits
to 71 proteins in 13 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.34 -0.32
70 AT1G20920 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.65 0.32 -0.31
71 AT5G47720 Thiolase family protein -0.65 0.29 -0.31
72 AT1G55930 CBS domain-containing protein / transporter associated
domain-containing protein		 0.65 0.31 -0.32
73 AT5G14310 carboxyesterase 16 carboxyesterase 16,
carboxyesterase 16		 0.65 0.3 -0.32
74 AT1G43580 Sphingomyelin synthetase family protein -0.65 0.32 -0.31
75 AT2G39100 RING/U-box superfamily protein -0.64 0.31 -0.33
76 AT4G38880 GLN phosphoribosyl pyrophosphate amidotransferase 3 GLN phosphoribosyl pyrophosphate
amidotransferase 3, GLN
phosphoribosyl pyrophosphate
amidotransferase 3		 0.64 0.31 -0.34
77 AT5G28090 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.33 -0.33
78 AT3G12680 floral homeotic protein (HUA1) ENHANCER OF AG-4 1 0.64 0.31 -0.31
79 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.64 0.29 -0.31
80 AT1G11390 Protein kinase superfamily protein 0.64 0.32 -0.32
81 AT5G11780 unknown protein; Has 37 Blast hits to 37 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.33 -0.3
82 AT5G23630 phosphate deficiency response 2 MALE GAMETOGENESIS IMPAIRED
ANTHERS, phosphate deficiency
response 2, PI DEFICIENCY RESPONSE
2		 0.64 0.31 -0.32
83 AT1G74260 purine biosynthesis 4 purine biosynthesis 4 0.64 0.32 -0.31
84 AT5G02020 Encodes a protein involved in salt tolerance, names SIS
(Salt Induced Serine rich).		 Salt Induced Serine rich -0.64 0.31 -0.31
85 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain 0.64 0.33 -0.31
86 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 0.64 0.31 -0.33
87 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 0.64 0.31 -0.31
88 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.62 0.32 -0.33
89 AT2G39570 ACT domain-containing protein ACT domain repeats 9 -0.62 0.32 -0.31
90 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.31 -0.3
91 AT3G11650 NDR1/HIN1-like 2 NDR1/HIN1-like 2 -0.61 0.33 -0.31
92 AT3G28400 transposable element gene -0.61 0.31 -0.33
93 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.61 0.3 -0.31
94 AT5G12310 RING/U-box superfamily protein -0.61 0.32 -0.32
95 AT5G66670 Protein of unknown function (DUF677) -0.6 0.32 -0.31
96 AT1G33760 Integrase-type DNA-binding superfamily protein -0.59 0.31 -0.33
97 AT2G01610 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.59 0.32 -0.31
98 AT4G10280 RmlC-like cupins superfamily protein -0.59 0.29 -0.32
99 AT4G27280 Calcium-binding EF-hand family protein -0.59 0.32 -0.31
100 AT3G20550 SMAD/FHA domain-containing protein DAWDLE -0.58 0.32 -0.31
101 AT2G44000 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.58 0.32 -0.33
102 AT5G42910 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.58 0.33 -0.3
103 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
104 AT1G24210 Paired amphipathic helix (PAH2) superfamily protein -0.58 0.3 -0.31
105 AT1G54850 HSP20-like chaperones superfamily protein -0.57 0.34 -0.31
106 AT3G46910 Cullin family protein -0.57 0.31 -0.32
107 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.35 -0.31
108 AT2G39090 tetratricopeptide repeat (TPR)-containing protein anaphase-promoting complex 7,
AtAPC7		 -0.57 0.32 -0.33
109 AT1G35250 Thioesterase superfamily protein -0.56 0.33 -0.3
110 AT5G49120 Protein of unknown function (DUF581) -0.56 0.33 -0.31
111 AT1G16460 rhodanese homologue 2 ARABIDOPSIS THALIANA
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
MERCAPTOPYRUVATE SULFURTRANSFERASE
2, rhodanese homologue 2,
SULFURTRANSFERASE 2,
SULFURTRANSFERASE 2		 -0.56 0.32 -0.31
112 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 -0.56 0.34 -0.31
113 AT2G05820 transposable element gene -0.56 0.32 -0.32
114 AT5G10750 Protein of unknown function (DUF1336) -0.55 0.31 -0.32
115 AT2G26170 cytochrome P450, family 711, subfamily A, polypeptide 1 cytochrome P450, family 711,
subfamily A, polypeptide 1, MORE
AXILLARY BRANCHES 1		 -0.55 0.31 -0.31
116 AT1G01670 RING/U-box superfamily protein -0.55 0.31 -0.31
117 AT3G23130 C2H2 and C2HC zinc fingers superfamily protein FLORAL DEFECTIVE 10, FLORAL ORGAN
NUMBER 1, SUPERMAN		 -0.55 0.32 -0.32
118 AT4G19670 RING/U-box superfamily protein -0.55 0.31 -0.31
119 AT5G58120 Disease resistance protein (TIR-NBS-LRR class) family -0.55 0.33 -0.28
120 AT3G46620 zinc finger (C3HC4-type RING finger) family protein -0.55 0.31 -0.32
121 AT1G70360 F-box family protein -0.54 0.3 -0.3
122 AT2G15640 F-box family protein -0.54 0.31 -0.32
123 AT3G21780 UDP-glucosyl transferase 71B6 UDP-glucosyl transferase 71B6 -0.54 0.32 -0.31
124 AT4G16710 glycosyltransferase family protein 28 -0.54 0.31 -0.31
125 AT2G18620 Terpenoid synthases superfamily protein -0.54 0.28 -0.3
126 AT2G01735 RING-finger protein for embryogenesis RING-finger protein for
embryogenesis		 -0.54 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		-0.77 0.44 -0.47 C0228
128 C0173 MST_2301.7 - - - 0.74 0.46 -0.41