AT3G57520 : seed imbibition 2
Query Information
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AGICode AT3G57520
Description seed imbibition 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G57520 seed imbibition 2 seed imbibition 2, raffinose
synthase 2, seed imbibition 2		 1 0.33 -0.33
2 AT1G80160 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 7 0.87 0.3 -0.31
3 AT4G38860 SAUR-like auxin-responsive protein family -0.87 0.33 -0.32
4 AT5G64330 Phototropic-responsive NPH3 family protein JK218, NON-PHOTOTROPIC HYPOCOTYL
3, ROOT PHOTOTROPISM 3		 -0.86 0.31 -0.32
5 AT5G64770 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 9 -0.85 0.29 -0.32
6 AT5G25460 Protein of unknown function, DUF642 -0.84 0.3 -0.31
7 AT1G26930 Galactose oxidase/kelch repeat superfamily protein 0.83 0.32 -0.3
8 AT3G12710 DNA glycosylase superfamily protein -0.83 0.31 -0.32
9 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 0.82 0.31 -0.33
10 AT2G40200 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.82 0.32 -0.31
11 AT5G58350 with no lysine (K) kinase 4 with no lysine (K) kinase 4, ZIK2 0.82 0.32 -0.29
12 AT1G17020 senescence-related gene 1 SENESCENCE-RELATED GENE 1,
senescence-related gene 1		 0.81 0.32 -0.3
13 AT1G72610 germin-like protein 1 A. THALIANA GERMIN-LIKE PROTEIN 1,
germin-like protein 1, GERMIN-LIKE
PROTEIN 1		 -0.81 0.32 -0.33
14 AT3G06770 Pectin lyase-like superfamily protein -0.81 0.32 -0.31
15 AT2G06850 xyloglucan endotransglucosylase/hydrolase 4 endoxyloglucan transferase A1,
ENDOXYLOGLUCAN TRANSFERASE,
xyloglucan
endotransglucosylase/hydrolase 4		 -0.81 0.32 -0.33
16 AT1G18270 ketose-bisphosphate aldolase class-II family protein 0.81 0.34 -0.32
17 AT5G35370 S-locus lectin protein kinase family protein 0.81 0.31 -0.32
18 AT1G22930 T-complex protein 11 0.81 0.3 -0.32
19 AT4G12880 early nodulin-like protein 19 AtENODL19, early nodulin-like
protein 19		 -0.81 0.3 -0.32
20 AT4G30020 PA-domain containing subtilase family protein -0.8 0.3 -0.31
21 AT5G48900 Pectin lyase-like superfamily protein -0.8 0.31 -0.31
22 AT4G33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase
bifunctional enzyme		 LKR, LYSINE-KETOGLUTARATE
REDUCTASE/SACCHAROPINE
DEHYDROGENASE, SACCHAROPINE
DEHYDROGENASE		 0.8 0.34 -0.32
23 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 0.8 0.33 -0.32
24 AT5G61170 Ribosomal protein S19e family protein -0.8 0.32 -0.31
25 AT2G10940 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.8 0.32 -0.31
26 AT1G52080 actin binding protein family AR791 0.8 0.3 -0.31
27 AT5G11160 adenine phosphoribosyltransferase 5 adenine phosphoribosyltransferase
5		 -0.8 0.32 -0.32
28 AT5G18060 SAUR-like auxin-responsive protein family -0.8 0.32 -0.33
29 AT3G04840 Ribosomal protein S3Ae -0.79 0.31 -0.33
30 AT3G30390 Transmembrane amino acid transporter family protein 0.79 0.31 -0.32
31 AT5G02890 HXXXD-type acyl-transferase family protein -0.79 0.32 -0.32
32 AT2G31945 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits
to 61 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.79 0.31 -0.31
33 AT5G41050 Pollen Ole e 1 allergen and extensin family protein -0.79 0.34 -0.34
34 AT2G32660 receptor like protein 22 receptor like protein 22, receptor
like protein 22		 0.79 0.33 -0.31
35 AT3G56340 Ribosomal protein S26e family protein -0.79 0.33 -0.33
36 AT4G37150 methyl esterase 9 ARABIDOPSIS THALIANA METHYL
ESTERASE 9, methyl esterase 9		 0.79 0.3 -0.3
37 AT4G30460 glycine-rich protein 0.78 0.32 -0.31
38 AT2G21540 SEC14-like 3 SEC14-LIKE 3, SEC14-like 3 -0.78 0.3 -0.28
39 AT4G29010 Enoyl-CoA hydratase/isomerase family ABNORMAL INFLORESCENCE MERISTEM 0.78 0.34 -0.33
40 AT1G11545 xyloglucan endotransglucosylase/hydrolase 8 xyloglucan
endotransglucosylase/hydrolase 8		 -0.78 0.32 -0.31
41 AT5G24800 basic leucine zipper 9 ARABIDOPSIS THALIANA BASIC LEUCINE
ZIPPER 9, basic leucine zipper 9,
BASIC LEUCINE ZIPPER O2 HOMOLOG 2		 0.78 0.3 -0.33
42 AT5G57150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.78 0.33 -0.31
43 AT5G39520 Protein of unknown function (DUF1997) 0.78 0.37 -0.31
44 AT5G03120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.78 0.32 -0.33
45 AT2G36950 Heavy metal transport/detoxification superfamily protein 0.78 0.32 -0.33
46 AT2G36620 ribosomal protein L24 ribosomal protein L24 -0.78 0.33 -0.32
47 AT5G62530 aldehyde dehydrogenase 12A1 aldehyde dehydrogenase 12A1,
ARABIDOPSIS THALIANA
DELTA1-PYRROLINE-5-CARBOXYLATE
DEHYDROGENASE,
DELTA1-PYRROLINE-5-CARBOXYLATE
DEHYDROGENASE		 0.77 0.32 -0.33
48 AT5G55620 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.77 0.32 -0.32
49 AT4G14320 Zinc-binding ribosomal protein family protein -0.77 0.34 -0.31
50 AT2G01250 Ribosomal protein L30/L7 family protein -0.77 0.31 -0.36
51 AT5G16130 Ribosomal protein S7e family protein -0.77 0.31 -0.32
52 AT2G25950 Protein of unknown function (DUF1000) 0.77 0.32 -0.31
53 AT3G60770 Ribosomal protein S13/S15 -0.77 0.31 -0.33
54 AT4G38850 SAUR-like auxin-responsive protein family ARABIDOPSIS THALIANA SMALL AUXIN
UPREGULATED 15, ARABIDOPSIS
COLUMBIA SAUR GENE 1, SMALL AUXIN
UPREGULATED 15, SMALL AUXIN UP RNA
1 FROM ARABIDOPSIS THALIANA
ECOTYPE COLUMBIA		 -0.77 0.31 -0.3
55 AT2G35190 novel plant snare 11 ATNPSN11, novel plant snare 11,
NSPN11		 -0.77 0.31 -0.31
56 AT3G12610 Leucine-rich repeat (LRR) family protein DNA-DAMAGE REPAIR/TOLERATION 100 -0.77 0.29 -0.29
57 AT5G19570 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0546
(InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.77 0.28 -0.29
58 AT3G53380 Concanavalin A-like lectin protein kinase family protein -0.77 0.32 -0.31
59 AT2G47190 myb domain protein 2 MYB DOMAIN PROTEIN 2, myb domain
protein 2		 0.77 0.34 -0.31
60 AT1G21880 lysm domain GPI-anchored protein 1 precursor lysm domain GPI-anchored protein 1
precursor		 -0.76 0.3 -0.31
61 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 0.76 0.31 -0.28
62 AT4G23820 Pectin lyase-like superfamily protein -0.76 0.28 -0.31
63 AT1G75680 glycosyl hydrolase 9B7 glycosyl hydrolase 9B7, glycosyl
hydrolase 9B7		 -0.76 0.32 -0.32
64 AT1G27400 Ribosomal protein L22p/L17e family protein -0.76 0.33 -0.33
65 AT5G65810 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 cotton Golgi-related 3 -0.76 0.31 -0.31
66 AT5G57550 xyloglucan endotransglucosylase/hydrolase 25 xyloglucan
endotransglucosylase/hydrolase 25,
xyloglucan endotransglycosylase 3		 0.76 0.31 -0.32
67 AT4G04960 Concanavalin A-like lectin protein kinase family protein 0.76 0.32 -0.32
68 AT2G41480 Peroxidase superfamily protein 0.76 0.31 -0.31
69 AT4G00100 ribosomal protein S13A ribosomal protein S13A, POINTED
FIRST LEAF 2, RPS13, ribosomal
protein S13A		 -0.76 0.31 -0.32
70 AT1G20010 tubulin beta-5 chain tubulin beta-5 chain -0.76 0.33 -0.33
71 AT3G06680 Ribosomal L29e protein family -0.76 0.29 -0.31
72 AT4G24000 cellulose synthase like G2 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G2, cellulose
synthase like G2		 0.76 0.32 -0.3
73 AT5G59870 histone H2A 6 histone H2A 6 -0.76 0.32 -0.3
74 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 -0.76 0.31 -0.33
75 AT4G32150 vesicle-associated membrane protein 711 vesicle-associated membrane
protein 711, vesicle-associated
membrane protein 711		 0.76 0.32 -0.31
76 AT5G23740 ribosomal protein S11-beta ribosomal protein S11-beta -0.76 0.31 -0.31
77 AT1G04520 plasmodesmata-located protein 2 plasmodesmata-located protein 2 -0.76 0.3 -0.33
78 AT3G23560 MATE efflux family protein ABERRANT LATERAL ROOT FORMATION 5 0.75 0.3 -0.32
79 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 0.75 0.32 -0.32
80 AT5G43100 Eukaryotic aspartyl protease family protein 0.75 0.33 -0.31
81 AT5G07590 Transducin/WD40 repeat-like superfamily protein -0.75 0.29 -0.32
82 AT5G10650 RING/U-box superfamily protein 0.75 0.31 -0.33
83 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 -0.75 0.31 -0.33
84 AT5G08380 alpha-galactosidase 1 alpha-galactosidase 1,
alpha-galactosidase 1		 0.75 0.33 -0.29
85 AT5G64140 ribosomal protein S28 ribosomal protein S28 -0.75 0.32 -0.34
86 AT4G30450 glycine-rich protein 0.75 0.3 -0.32
87 AT3G05590 ribosomal protein L18 ribosomal protein L18 -0.75 0.31 -0.31
88 AT3G06070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits
to 33 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.75 0.34 -0.34
89 AT1G29440 SAUR-like auxin-responsive protein family -0.75 0.32 -0.32
90 AT4G10050 esterase/lipase/thioesterase family protein 0.75 0.32 -0.36
91 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 -0.75 0.32 -0.29
92 AT2G28780 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence
meristem, root, flower; EXPRESSED DURING: petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF939, bacterial
(InterPro:IPR010343); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast
hits to 667 proteins in 305 species: Archae - 0; Bacteria -
588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0;
Other Eukaryotes - 15 (source: NCBI BLink).		 -0.75 0.32 -0.31
93 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 -0.74 0.31 -0.31
94 AT5G02760 Protein phosphatase 2C family protein -0.74 0.31 -0.3
95 AT3G07010 Pectin lyase-like superfamily protein -0.74 0.28 -0.34
96 AT2G43460 Ribosomal L38e protein family -0.74 0.32 -0.32
97 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 -0.74 0.34 -0.31
98 AT5G15160 BANQUO 2 BASIC HELIX-LOOP-HELIX PROTEIN
134, BANQUO 2		 -0.74 0.32 -0.29
99 AT2G16720 myb domain protein 7 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 7, ATY49, myb domain
protein 7		 0.74 0.29 -0.32
100 AT3G26000 Ribonuclease inhibitor 0.74 0.31 -0.3
101 AT3G60245 Zinc-binding ribosomal protein family protein -0.74 0.31 -0.33
102 AT5G17620 CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1
(InterPro:IPR010604); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.74 0.33 -0.32
103 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 -0.74 0.3 -0.3
104 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 0.74 0.32 -0.32
105 AT5G18780 F-box/RNI-like superfamily protein 0.74 0.32 -0.32
106 AT4G16720 Ribosomal protein L23/L15e family protein -0.73 0.32 -0.3
107 AT3G52940 Ergosterol biosynthesis ERG4/ERG24 family EXTRA-LONG-LIFESPAN 1, FACKEL,
HYD2		 -0.73 0.32 -0.3
108 AT3G18630 uracil dna glycosylase uracil dna glycosylase, uracil dna
glycosylase		 -0.73 0.32 -0.3
109 AT5G05840 Protein of unknown function (DUF620) -0.73 0.3 -0.3
110 AT4G19450 Major facilitator superfamily protein 0.73 0.32 -0.3
111 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 0.73 0.32 -0.33
112 AT5G25580 BEST Arabidopsis thaliana protein match is: DDT domain
superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178
proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa -
51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes
- 29 (source: NCBI BLink).		 -0.73 0.33 -0.32
113 AT5G66310 ATP binding microtubule motor family protein -0.73 0.29 -0.32
114 AT5G39740 ribosomal protein L5 B OLIGOCELLULA 7, ribosomal protein
L5 B		 -0.73 0.32 -0.32
115 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.33 -0.3
116 AT4G28980 CDK-activating kinase 1AT CDK-activating kinase 1AT,
CYCLIN-DEPENDENT KINASE F;1		 -0.73 0.32 -0.31
117 AT1G26880 Ribosomal protein L34e superfamily protein -0.73 0.3 -0.32
118 AT4G27720 Major facilitator superfamily protein -0.73 0.3 -0.29
119 AT3G21230 4-coumarate:CoA ligase 5 4-coumarate:CoA ligase 5 0.73 0.3 -0.32
120 AT3G23390 Zinc-binding ribosomal protein family protein -0.73 0.31 -0.32
121 AT4G14960 Tubulin/FtsZ family protein TUA6 -0.73 0.33 -0.29
122 AT4G25830 Uncharacterised protein family (UPF0497) -0.73 0.32 -0.34
123 AT4G22010 SKU5 similar 4 SKU5 similar 4 -0.73 0.34 -0.32
124 AT1G69450 Early-responsive to dehydration stress protein (ERD4) 0.73 0.29 -0.3
125 AT5G10400 Histone superfamily protein -0.73 0.32 -0.32
126 AT1G12500 Nucleotide-sugar transporter family protein -0.73 0.31 -0.3
127 AT2G44130 Galactose oxidase/kelch repeat superfamily protein 0.73 0.33 -0.32
128 AT2G21580 Ribosomal protein S25 family protein -0.73 0.32 -0.32
129 AT2G37640 Barwin-like endoglucanases superfamily protein EXPANSIN 3, ARABIDOPSIS THALIANA
EXPANSIN A3, ATHEXP ALPHA 1.9,
EXP3		 -0.73 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0163 MST_1589.2 - - - 0.78 0.42 -0.45
131 C0161 MST_1566.3 - - - 0.76 0.47 -0.46
132 C0160 MST_1509.5 - - - 0.75 0.46 -0.45