AT3G56980 : BHLH039
Query Information
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AGICode AT3G56980
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G56980 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH039, OBP3-RESPONSIVE GENE 3 1 0.3 -0.33
2 AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.96 0.31 -0.3
3 AT3G18290 zinc finger protein-related BRUTUS, embryo defective 2454 0.94 0.32 -0.32
4 AT5G53450 OBP3-responsive gene 1 OBP3-responsive gene 1 0.93 0.3 -0.31
5 AT1G23020 ferric reduction oxidase 3 FERRIC REDUCTION OXIDASE 3, ferric
reduction oxidase 3		 0.92 0.31 -0.3
6 AT5G67370 Protein of unknown function (DUF1230) 0.9 0.32 -0.32
7 AT2G42750 DNAJ heat shock N-terminal domain-containing protein 0.89 0.34 -0.32
8 AT1G64980 Nucleotide-diphospho-sugar transferases superfamily protein 0.88 0.32 -0.31
9 AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 POPEYE 0.88 0.32 -0.29
10 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 0.87 0.31 -0.33
11 AT5G05250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.87 0.31 -0.33
12 AT5G04150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH101 0.87 0.34 -0.32
13 AT5G67330 natural resistance associated macrophage protein 4 ARABIDOPSIS THALIANA NATURAL
RESISTANCE ASSOCIATED MACROPHAGE
PROTEIN 4, natural resistance
associated macrophage protein 4		 0.8 0.36 -0.32
14 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.78 0.3 -0.31
15 AT5G01600 ferretin 1 ARABIDOPSIS THALIANA FERRETIN 1,
ferretin 1		 -0.78 0.31 -0.33
16 AT4G16370 oligopeptide transporter oligopeptide transporter, OPT3,
oligopeptide transporter		 0.75 0.3 -0.31
17 AT1G48300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87
proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa -
12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink).		 0.74 0.32 -0.31
18 AT2G36885 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to
172 proteins in 58 species: Archae - 0; Bacteria - 116;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 24 (source: NCBI BLink).		 -0.73 0.35 -0.29
19 AT1G12030 Protein of unknown function (DUF506) 0.73 0.31 -0.33
20 AT3G17770 Dihydroxyacetone kinase 0.73 0.32 -0.3
21 AT1G03470 Kinase interacting (KIP1-like) family protein 0.72 0.33 -0.32
22 AT1G32070 nuclear shuttle interacting nuclear shuttle interacting,
nuclear shuttle interacting		 0.71 0.31 -0.31
23 AT5G02560 histone H2A 12 histone H2A 12 0.71 0.32 -0.29
24 AT5G54530 Protein of unknown function, DUF538 0.71 0.31 -0.32
25 AT3G11050 ferritin 2 ferritin 2, ferritin 2 -0.7 0.32 -0.31
26 AT3G02570 Mannose-6-phosphate isomerase, type I MATERNAL EFFECT EMBRYO ARREST 31,
PHOSPHOMANNOSE ISOMERASE 1		 0.69 0.31 -0.31
27 AT1G53910 related to AP2 12 related to AP2 12 -0.69 0.32 -0.31
28 AT2G14260 proline iminopeptidase proline iminopeptidase 0.68 0.3 -0.3
29 AT3G54860 Sec1/munc18-like (SM) proteins superfamily ATVPS33, VACUOLAR PROTEIN SORTING
33		 0.68 0.29 -0.33
30 AT1G14780 MAC/Perforin domain-containing protein -0.68 0.31 -0.32
31 AT1G23010 Cupredoxin superfamily protein Low Phosphate Root1 -0.68 0.31 -0.32
32 AT1G55915 zinc ion binding -0.67 0.3 -0.32
33 AT1G06060 LisH and RanBPM domains containing protein 0.67 0.33 -0.32
34 AT3G51670 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 0.67 0.34 -0.32
35 AT3G01960 unknown protein; Has 13 Blast hits to 13 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.32 -0.29
36 AT4G25700 beta-hydroxylase 1 B1, BETA CAROTENOID HYDROXYLASE 1,
beta-hydroxylase 1, chy1		 0.66 0.31 -0.32
37 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 0.66 0.32 -0.31
38 AT4G04770 ATP binding cassette protein 1 ATP binding cassette protein 1,
ATP-binding cassette I8, ATP
binding cassette protein 1,
ARABIDOPSIS THALIANA NUCLEOSOME
ASSEMBLY PROTEIN 1, LONG AFTER FR		 -0.66 0.32 -0.29
39 AT5G13680 IKI3 family protein ABA-OVERLY SENSITIVE 1, AtELP1,
ELONGATA 2		 -0.66 0.31 -0.31
40 AT2G40300 ferritin 4 ferritin 4, ferritin 4 -0.66 0.31 -0.31
41 AT3G18295 Protein of unknown function (DUF1639) 0.66 0.31 -0.32
42 AT1G76930 extensin 4 EXTENSIN 1, extensin 4, extensin
1, extensin 4, OBP3-RESPONSIVE
GENE 5		 -0.65 0.31 -0.32
43 AT5G25820 Exostosin family protein -0.65 0.33 -0.31
44 AT2G43550 Scorpion toxin-like knottin superfamily protein 0.65 0.33 -0.31
45 AT5G12310 RING/U-box superfamily protein 0.65 0.33 -0.34
46 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.64 0.31 -0.3
47 AT3G08040 MATE efflux family protein ATFRD3, FERRIC REDUCTASE DEFECTIVE
3, MANGANESE ACCUMULATOR 1		 -0.64 0.31 -0.32
48 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 0.64 0.31 -0.33
49 AT4G36050 endonuclease/exonuclease/phosphatase family protein -0.64 0.29 -0.31
50 AT1G55300 TBP-associated factor 7 TBP-associated factor 7 0.64 0.33 -0.3
51 AT3G43670 Copper amine oxidase family protein -0.64 0.3 -0.34
52 AT2G30540 Thioredoxin superfamily protein 0.64 0.31 -0.33
53 AT1G14570 UBX domain-containing protein 0.63 0.32 -0.31
54 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.63 0.34 -0.3
55 AT4G08390 stromal ascorbate peroxidase stromal ascorbate peroxidase -0.63 0.29 -0.28
56 AT4G36780 BES1/BZR1 homolog 2 BES1/BZR1 homolog 2 0.63 0.34 -0.31
57 AT2G02850 plantacyanin plantacyanin -0.63 0.29 -0.32
58 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.63 0.3 -0.31
59 AT5G57250 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.35 -0.32
60 AT1G55610 BRI1 like BRI1 like -0.63 0.3 -0.32
61 AT1G53060 Legume lectin family protein 0.63 0.33 -0.33
62 AT2G32280 Protein of unknown function (DUF1218) -0.63 0.32 -0.31
63 AT3G07930 DNA glycosylase superfamily protein 0.62 0.32 -0.31
64 AT1G45616 receptor like protein 6 receptor like protein 6, receptor
like protein 6		 -0.62 0.32 -0.3
65 AT4G24020 NIN like protein 7 NIN like protein 7 0.62 0.29 -0.29
66 AT3G62270 HCO3- transporter family -0.62 0.32 -0.3
67 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.62 0.32 -0.31
68 AT3G24315 Sec20 family protein AtSec20 0.61 0.34 -0.3
69 AT1G12230 Aldolase superfamily protein 0.61 0.31 -0.33
70 AT4G22770 AT hook motif DNA-binding family protein -0.61 0.31 -0.28
71 AT3G52860 unknown protein; Has 86 Blast hits to 86 proteins in 36
species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi -
13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.61 0.31 -0.33
72 AT2G17300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast
hits to 42 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.33 -0.34
73 AT5G47400 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.29 -0.3
74 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 0.61 0.32 -0.33
75 AT4G24130 Protein of unknown function, DUF538 -0.61 0.3 -0.31
76 AT4G14385 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Histone H4
acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 0.6 0.32 -0.3
77 AT5G63480 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.6 0.33 -0.29
78 AT5G59400 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97
proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.3 -0.33
79 AT5G65630 global transcription factor group E7 global transcription factor group
E7		 -0.6 0.31 -0.3
80 AT5G66620 DA1-related protein 6 DA1-related protein 6 -0.6 0.32 -0.31
81 AT3G18035 winged-helix DNA-binding transcription factor family
protein		 HON4 0.6 0.33 -0.29
82 AT1G58290 Glutamyl-tRNA reductase family protein Arabidopsis thaliana hemA 1, HEMA1 -0.6 0.3 -0.31
83 AT2G39710 Eukaryotic aspartyl protease family protein -0.6 0.31 -0.31
84 AT5G58940 calmodulin-binding receptor-like cytoplasmic kinase 1 calmodulin-binding receptor-like
cytoplasmic kinase 1		 -0.59 0.32 -0.33
85 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 0.59 0.34 -0.32
86 AT1G21140 Vacuolar iron transporter (VIT) family protein -0.59 0.31 -0.32
87 AT5G03415 Transcription factor DP ATDPB, DPB 0.59 0.32 -0.31
88 AT1G33475 SNARE-like superfamily protein 0.59 0.32 -0.34
89 AT2G22740 SU(VAR)3-9 homolog 6 SET DOMAIN PROTEIN 23, SU(VAR)3-9
homolog 6		 0.59 0.32 -0.31
90 AT4G26940 Galactosyltransferase family protein -0.59 0.3 -0.33
91 AT1G62450 Immunoglobulin E-set superfamily protein 0.58 0.29 -0.3
92 AT5G42960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, plastid, chloroplast envelope;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.58 0.3 -0.31
93 AT5G03440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.58 0.29 -0.33
94 AT3G19400 Cysteine proteinases superfamily protein 0.58 0.33 -0.31
95 AT5G14940 Major facilitator superfamily protein -0.58 0.3 -0.32
96 AT3G50750 BES1/BZR1 homolog 1 BES1/BZR1 homolog 1 0.58 0.29 -0.3
97 AT4G31270 sequence-specific DNA binding transcription factors 0.58 0.32 -0.34
98 AT1G54920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.58 0.32 -0.32
99 AT2G27380 extensin proline-rich 1 extensin proline-rich 1, extensin
proline-rich 1		 -0.58 0.29 -0.31
100 AT4G01920 Cysteine/Histidine-rich C1 domain family protein -0.58 0.32 -0.31
101 AT5G06950 bZIP transcription factor family protein AHBP-1B, TGA2 0.58 0.33 -0.32
102 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 -0.57 0.31 -0.33
103 AT1G50420 scarecrow-like 3 SCARECROW-LIKE 3, scarecrow-like 3 -0.57 0.33 -0.32
104 AT1G56010 NAC domain containing protein 1 Arabidopsis NAC domain containing
protein 21, Arabidopsis NAC domain
containing protein 22, NAC domain
containing protein 1		 -0.57 0.33 -0.32
105 AT4G08150 KNOTTED-like from Arabidopsis thaliana BREVIPEDICELLUS, BREVIPEDICELLUS
1, KNOTTED-like from Arabidopsis
thaliana		 -0.56 0.33 -0.32
106 AT2G06170 transposable element gene -0.56 0.3 -0.35
107 AT4G19890 Pentatricopeptide repeat (PPR-like) superfamily protein -0.56 0.33 -0.32
108 AT3G18360 VQ motif-containing protein -0.55 0.32 -0.31
109 AT2G25620 DNA-binding protein phosphatase 1 DNA-binding protein phosphatase 1,
DNA-binding protein phosphatase 1		 -0.55 0.31 -0.31
110 AT2G35750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.55 0.33 -0.3
111 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.32 -0.3
112 AT1G17630 Pentatricopeptide repeat (PPR-like) superfamily protein -0.55 0.34 -0.3
113 AT1G63670 Protein of unknown function (DUF3741) -0.54 0.32 -0.32
114 AT2G37740 zinc-finger protein 10 ZINC-FINGER PROTEIN 10,
zinc-finger protein 10		 -0.54 0.32 -0.31
115 AT2G38280 AMP deaminase, putative / myoadenylate deaminase, putative ADENOSINE 5'-MONOPHOSPHATE
DEAMINASE, EMBRYONIC FACTOR1		 -0.54 0.32 -0.32
116 AT2G26120 glycine-rich protein -0.54 0.29 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0167 MST_1744.8 - - - 0.83 0.47 -0.45
118 C0162 MST_1588.3 - - - 0.73 0.47 -0.4
119 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.72 0.45 -0.45
120 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.69 0.45 -0.45 C0079
121 C0159 MST_1505.6 - - - 0.68 0.42 -0.47
122 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		0.63 0.47 -0.44 C0009