AT3G56550 : -

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AGICode	AT3G56550
Description	Pentatricopeptide repeat (PPR) superfamily protein

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT3G56550	Pentatricopeptide repeat (PPR) superfamily protein		1	0.31	-0.31
2	AT2G36720	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain		0.69	0.33	-0.33
3	AT5G55340	MBOAT (membrane bound O-acyl transferase) family protein		0.69	0.31	-0.31
4	AT2G47520	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana ethylene response factor 71, ethylene response factor 71, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2	-0.68	0.31	-0.33
5	AT5G15570	Bromodomain transcription factor		0.68	0.33	-0.32
6	AT1G77470	replication factor C subunit 3	EMBRYO DEFECTIVE 2810, replication factor C subunit 3, replication factor C 5	0.67	0.31	-0.33
7	AT4G20060	ARM repeat superfamily protein	EMBRYO DEFECTIVE 1895	0.67	0.32	-0.32
8	AT1G67690	Zincin-like metalloproteases family protein		0.67	0.33	-0.31
9	AT3G55950	CRINKLY4 related 3	ATCRR3, CRINKLY4 related 3	-0.66	0.33	-0.29
10	AT1G19300	Nucleotide-diphospho-sugar transferases superfamily protein	ATGATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GAOLAOZHUANGREN 1, PARVUS	-0.66	0.31	-0.3
11	AT3G27440	uridine kinase-like 5	uridine kinase-like 5	-0.66	0.29	-0.32
12	AT1G64570	Homeodomain-like superfamily protein	DUO POLLEN 3	0.66	0.32	-0.32
13	AT3G54350	Forkhead-associated (FHA) domain-containing protein	embryo defective 1967	0.66	0.31	-0.32
14	AT2G28070	ABC-2 type transporter family protein	ATP-binding cassette G3	0.65	0.33	-0.33
15	AT1G72290	Kunitz family trypsin and protease inhibitor protein		0.65	0.3	-0.32
16	AT2G41580	transposable element gene		-0.65	0.31	-0.31
17	AT1G63640	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain		0.65	0.29	-0.32
18	AT3G21810	Zinc finger C-x8-C-x5-C-x3-H type family protein		0.64	0.31	-0.32
19	AT1G19485	Transducin/WD40 repeat-like superfamily protein		0.64	0.32	-0.3
20	AT5G51480	SKU5 similar 2	SKU5 similar 2	-0.64	0.3	-0.3
21	AT2G37050	Leucine-rich repeat protein kinase family protein		0.63	0.3	-0.32
22	AT1G76630	Tetratricopeptide repeat (TPR)-like superfamily protein		0.63	0.3	-0.3
23	AT1G31630	AGAMOUS-like 86	AGAMOUS-like 86	-0.63	0.3	-0.29
24	AT5G03450	Transducin/WD40 repeat-like superfamily protein		0.62	0.32	-0.29
25	AT2G35635	ubiquitin 7	RELATED TO UBIQUITIN 2, ubiquitin 7	-0.62	0.33	-0.3
26	AT1G18970	germin-like protein 4	germin-like protein 4	-0.62	0.29	-0.31
27	AT2G17410	ARID/BRIGHT DNA-binding domain-containing protein		0.62	0.32	-0.33
28	AT3G50130	Plant protein of unknown function (DUF247)		-0.61	0.3	-0.3
29	AT1G15840	unknown protein; Has 111484 Blast hits to 29940 proteins in 1985 species: Archae - 153; Bacteria - 40635; Metazoa - 31564; Fungi - 6444; Plants - 10232; Viruses - 1710; Other Eukaryotes - 20746 (source: NCBI BLink).		-0.61	0.31	-0.32
30	AT2G47850	Zinc finger C-x8-C-x5-C-x3-H type family protein		0.61	0.31	-0.31
31	AT5G18910	Protein kinase superfamily protein		0.61	0.34	-0.32
32	AT2G32630	Pentatricopeptide repeat (PPR-like) superfamily protein		0.61	0.32	-0.31
33	AT5G10100	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	trehalose-6-phosphate phosphatase I	0.61	0.33	-0.31
34	AT2G02700	Cysteine/Histidine-rich C1 domain family protein		-0.61	0.31	-0.32
35	AT3G24890	vesicle-associated membrane protein 728	ATVAMP728, vesicle-associated membrane protein 728	0.61	0.32	-0.31
36	AT3G14880	BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 560 Blast hits to 560 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		0.6	0.3	-0.33
37	AT4G14590	embryo defective 2739	embryo defective 2739	-0.6	0.33	-0.3
38	ATMG00870	hypothetical protein	ORF184	-0.6	0.33	-0.33
39	AT1G14750	Cyclin family protein	SOLO DANCERS	-0.6	0.33	-0.31
40	AT5G48340	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		0.6	0.33	-0.3
41	AT2G26880	AGAMOUS-like 41	AGAMOUS-like 41	0.6	0.32	-0.33
42	AT4G21780	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		-0.6	0.3	-0.3
43	AT1G62920	CONTAINS InterPro DOMAIN/s: Proteasome maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana protein match is: Proteasome maturation factor UMP1 (TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		0.6	0.32	-0.33
44	AT4G11850	phospholipase D gamma 1	maternal effect embryo arrest 54, phospholipase D gamma 1	-0.6	0.31	-0.29
45	AT2G27760	tRNAisopentenyltransferase 2	tRNAisopentenyltransferase 2, IPPT, tRNAisopentenyltransferase 2	0.59	0.28	-0.32
46	AT5G54090	DNA mismatch repair protein MutS, type 2		0.59	0.31	-0.3
47	AT1G63960	Copper transport protein family		0.59	0.34	-0.33
48	AT2G25420	transducin family protein / WD-40 repeat family protein		0.59	0.33	-0.31
49	AT5G07500	Zinc finger C-x8-C-x5-C-x3-H type family protein	PEI1	0.58	0.33	-0.31
50	AT5G39700	myb domain protein 89	myb domain protein 89, myb domain protein 89	0.58	0.31	-0.34
51	AT5G42660	Protein of unknown function (DUF616)		-0.58	0.3	-0.3
52	AT4G30900	DNAse I-like superfamily protein		0.58	0.32	-0.31
53	AT1G29220	transcriptional regulator family protein		0.58	0.3	-0.34
54	ATMG00840	hypothetical protein	ORF121B	-0.58	0.33	-0.33
55	AT5G44510	target of AVRB operation1	target of AVRB operation1	0.58	0.3	-0.32
56	AT2G28960	Leucine-rich repeat protein kinase family protein		-0.58	0.31	-0.31
57	AT5G47280	ADR1-like 3	ADR1-like 3	0.58	0.33	-0.32
58	AT1G33400	Tetratricopeptide repeat (TPR)-like superfamily protein	tetratricopeptide repeat 9	0.58	0.31	-0.33
59	AT3G26560	ATP-dependent RNA helicase, putative		0.57	0.32	-0.32
60	AT2G41620	Nucleoporin interacting component (Nup93/Nic96-like) family protein		0.57	0.31	-0.3
61	AT1G18280	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		-0.57	0.32	-0.32
62	AT1G22860	Vacuolar sorting protein 39		0.57	0.32	-0.33
63	AT1G75160	Protein of unknown function (DUF620)		-0.57	0.32	-0.32
64	AT2G06840	transposable element gene		-0.57	0.29	-0.33
65	AT2G14380	transposable element gene		-0.57	0.32	-0.32
66	AT3G07330	Cellulose-synthase-like C6	ATCSLC06, Cellulose-synthase-like C6, CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6	-0.57	0.33	-0.34
67	AT2G31290	Ubiquitin carboxyl-terminal hydrolase family protein		0.57	0.31	-0.34
68	AT1G06150	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	EMBRYO DEFECTIVE 1444	0.57	0.29	-0.32
69	AT5G52070	Agenet domain-containing protein		0.57	0.31	-0.29
70	AT3G18170	Glycosyltransferase family 61 protein		-0.57	0.35	-0.31
71	AT1G01980	FAD-binding Berberine family protein		0.56	0.33	-0.32
72	AT5G49790	transposable element gene		-0.56	0.31	-0.31
73	AT1G42630	transposable element gene		-0.56	0.31	-0.31
74	AT5G59040	copper transporter 3	copper transporter 3	0.56	0.3	-0.32
75	AT4G26280	P-loop containing nucleoside triphosphate hydrolases superfamily protein		0.56	0.34	-0.33
76	AT2G18830	BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G15010.2); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.55	0.3	-0.32
77	AT1G54050	HSP20-like chaperones superfamily protein		-0.55	0.31	-0.32
78	AT4G03600	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		-0.55	0.34	-0.32
79	AT1G58330	transcription factor-related	ZW2	-0.55	0.32	-0.33

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
80	C0200	Phosphatidylglycerol-32:0	-	Phosphatidylglycerol-32:0	cardiolipin biosynthesis II, linoleate biosynthesis I, glycerophosphodiester degradation, glutathione redox reactions I	-0.56	0.33	-0.32

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