AT3G55250 : PIGMENT DEFECTIVE 329
Query Information
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AGICode AT3G55250
Description unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 1 0.3 -0.31
2 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.95 0.32 -0.33
3 AT5G11270 overexpressor of cationic peroxidase 3 overexpressor of cationic
peroxidase 3		 0.92 0.32 -0.3
4 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.92 0.32 -0.29
5 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.92 0.3 -0.33
6 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.33 -0.31
7 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.92 0.3 -0.3
8 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.91 0.33 -0.29
9 AT3G52380 chloroplast RNA-binding protein 33 chloroplast RNA-binding protein
33, PIGMENT DEFECTIVE 322		 0.91 0.31 -0.31
10 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.91 0.3 -0.3
11 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.91 0.33 -0.32
12 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.32 -0.33
13 AT2G33180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes -
14 (source: NCBI BLink).		 0.91 0.33 -0.32
14 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.91 0.31 -0.3
15 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.91 0.32 -0.3
16 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.9 0.33 -0.32
17 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.9 0.32 -0.32
18 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.9 0.31 -0.32
19 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.9 0.3 -0.31
20 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.31 -0.33
21 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.9 0.29 -0.32
22 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.9 0.31 -0.33
23 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.31 -0.33
24 AT3G19810 Protein of unknown function (DUF177) 0.9 0.31 -0.32
25 AT2G18710 SECY homolog 1 SECY homolog 1 0.9 0.32 -0.32
26 AT5G52970 thylakoid lumen 15.0 kDa protein 0.9 0.3 -0.32
27 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.9 0.29 -0.32
28 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.9 0.29 -0.33
29 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.9 0.32 -0.33
30 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.89 0.3 -0.29
31 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.89 0.31 -0.31
32 AT3G54210 Ribosomal protein L17 family protein 0.89 0.3 -0.3
33 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.33 -0.31
34 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.89 0.31 -0.29
35 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.89 0.31 -0.29
36 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.29 -0.3
37 AT2G33450 Ribosomal L28 family 0.89 0.29 -0.3
38 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.89 0.31 -0.32
39 AT5G44650 Encodes a chloroplast protein that induces tolerance to
multiple environmental stresses and reduces photooxidative
damage.		 Arabidopsis thaliana chloroplast
protein-enhancing stress
tolerance, chloroplast
protein-enhancing stress
tolerance, Ycf3-interacting
protein 1		 0.89 0.31 -0.32
40 AT3G12930 Lojap-related protein 0.89 0.32 -0.29
41 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.89 0.29 -0.34
42 AT2G43030 Ribosomal protein L3 family protein 0.89 0.31 -0.31
43 AT1G14270 CAAX amino terminal protease family protein 0.89 0.32 -0.33
44 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.89 0.34 -0.31
45 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.89 0.31 -0.31
46 AT2G24090 Ribosomal protein L35 0.89 0.32 -0.32
47 AT5G54600 Translation protein SH3-like family protein 0.89 0.3 -0.31
48 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.3 -0.31
49 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.89 0.3 -0.3
50 AT3G29185 Domain of unknown function (DUF3598) 0.88 0.31 -0.32
51 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.88 0.32 -0.32
52 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein AtPLR1, pyridoxal reductase 1 0.88 0.34 -0.3
53 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.88 0.3 -0.31
54 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.32 -0.32
55 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.88 0.32 -0.34
56 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.88 0.32 -0.31
57 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.88 0.29 -0.31
58 AT2G29360 NAD(P)-binding Rossmann-fold superfamily protein 0.88 0.32 -0.29
59 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.32 -0.31
60 AT2G06520 photosystem II subunit X photosystem II subunit X 0.88 0.31 -0.32
61 AT1G11860 Glycine cleavage T-protein family 0.88 0.31 -0.29
62 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.3 -0.31
63 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.88 0.3 -0.3
64 AT2G47910 chlororespiratory reduction 6 chlororespiratory reduction 6 0.87 0.31 -0.32
65 AT2G47450 chloroplast signal recognition particle component (CAO) CHAOS, CHLOROPLAST SIGNAL
RECOGNITION PARTICLE 43		 0.87 0.31 -0.32
66 AT4G17560 Ribosomal protein L19 family protein 0.87 0.32 -0.32
67 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.87 0.32 -0.33
68 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.87 0.32 -0.31
69 AT3G05410 Photosystem II reaction center PsbP family protein 0.87 0.32 -0.33
70 AT1G73110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.87 0.3 -0.32
71 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.87 0.33 -0.3
72 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.87 0.32 -0.33
73 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.87 0.32 -0.32
74 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.87 0.31 -0.32
75 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.87 0.34 -0.33
76 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.87 0.31 -0.29
77 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.87 0.34 -0.34
78 AT4G30580 Phospholipid/glycerol acyltransferase family protein ATS2, EMBRYO DEFECTIVE 1995,
lysophosphatidic acid
acyltransferase 1		 0.87 0.31 -0.3
79 AT2G47400 CP12 domain-containing protein 1 CP12 DOMAIN-CONTAINING PROTEIN 1,
CP12 domain-containing protein 1		 0.86 0.31 -0.32
80 AT1G11430 plastid developmental protein DAG, putative 0.86 0.32 -0.32
81 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.86 0.3 -0.33
82 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.86 0.29 -0.34
83 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.86 0.33 -0.32
84 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.86 0.31 -0.31
85 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.86 0.33 -0.31
86 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.86 0.33 -0.3
87 AT5G66470 RNA binding;GTP binding 0.86 0.31 -0.31
88 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.86 0.31 -0.31
89 AT2G21860 violaxanthin de-epoxidase-related 0.86 0.3 -0.3
90 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.86 0.32 -0.3
91 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.81 0.3 -0.31
92 AT3G25290 Auxin-responsive family protein -0.8 0.3 -0.29
93 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.79 0.33 -0.32
94 AT2G17500 Auxin efflux carrier family protein -0.78 0.33 -0.32
95 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.77 0.34 -0.3
96 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.77 0.31 -0.31
97 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.76 0.28 -0.29
98 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.76 0.3 -0.33
99 AT5G38030 MATE efflux family protein -0.74 0.33 -0.31
100 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.74 0.32 -0.34
101 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.73 0.31 -0.33
102 AT4G16110 response regulator 2 response regulator 2, response
regulator 2		 -0.73 0.32 -0.31
103 AT2G24570 WRKY DNA-binding protein 17 ATWRKY17, WRKY DNA-binding protein
17		 -0.72 0.32 -0.3
104 AT5G37540 Eukaryotic aspartyl protease family protein -0.71 0.32 -0.33
105 AT4G36830 GNS1/SUR4 membrane protein family HOS3-1 -0.7 0.31 -0.36
106 AT4G37410 cytochrome P450, family 81, subfamily F, polypeptide 4 cytochrome P450, family 81,
subfamily F, polypeptide 4		 -0.7 0.28 -0.32
107 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.7 0.34 -0.32
108 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.7 0.32 -0.33
109 AT3G55890 Yippee family putative zinc-binding protein -0.7 0.33 -0.32
110 AT2G40110 Yippee family putative zinc-binding protein -0.69 0.29 -0.34
111 AT3G49810 ARM repeat superfamily protein -0.69 0.33 -0.33
112 AT3G26460 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.69 0.31 -0.31
113 AT4G11670 Protein of unknown function (DUF810) -0.69 0.31 -0.32
114 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.68 0.33 -0.33
115 AT5G38020 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.68 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.87 0.44 -0.44 C0133
117 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.79 0.43 -0.43 C0051