AT3G55070 : -
Query Information
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AGICode AT3G55070
Description LisH/CRA/RING-U-box domains-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G55070 LisH/CRA/RING-U-box domains-containing protein 1 0.33 -0.32
2 AT2G17700 ACT-like protein tyrosine kinase family protein serine/threonine/tyrosine kinase 8 0.91 0.32 -0.3
3 AT3G48760 DHHC-type zinc finger family protein 0.88 0.29 -0.33
4 AT4G32250 Protein kinase superfamily protein 0.88 0.32 -0.33
5 AT1G01710 Acyl-CoA thioesterase family protein 0.88 0.32 -0.32
6 AT3G17000 ubiquitin-conjugating enzyme 32 ubiquitin-conjugating enzyme 32 0.88 0.3 -0.31
7 AT4G30490 AFG1-like ATPase family protein 0.88 0.32 -0.3
8 AT3G45160 Putative membrane lipoprotein -0.86 0.32 -0.32
9 AT3G25620 ABC-2 type transporter family protein ATP-binding cassette G21 0.85 0.35 -0.32
10 AT3G21610 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.85 0.3 -0.31
11 AT1G50940 electron transfer flavoprotein alpha electron transfer flavoprotein
alpha		 0.84 0.33 -0.32
12 AT1G48440 B-cell receptor-associated 31-like 0.84 0.3 -0.32
13 AT1G54130 RELA/SPOT homolog 3 AT-RSH3, RELA/SPOT HOMOLOG 3,
RELA/SPOT homolog 3		 0.84 0.33 -0.32
14 AT1G33490 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2062 (InterPro:IPR018639); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29
species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0;
Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.84 0.3 -0.31
15 AT3G46000 actin depolymerizing factor 2 actin depolymerizing factor 2 0.84 0.3 -0.31
16 AT1G76490 hydroxy methylglutaryl CoA reductase 1 AtHMGR1, hydroxy methylglutaryl
CoA reductase 1,
3-HYDROXY-3-METHYLGLUTARYL COA
REDUCTASE 1		 0.84 0.31 -0.32
17 AT4G37980 elicitor-activated gene 3-1 ATCAD7, CINNAMYL-ALCOHOL
DEHYDROGENASE 7,
ELICITOR-ACTIVATED GENE 3,
elicitor-activated gene 3-1		 0.83 0.29 -0.3
18 AT2G41040 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.83 0.32 -0.31
19 AT1G68820 Transmembrane Fragile-X-F-associated protein 0.83 0.31 -0.32
20 AT2G47710 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.83 0.31 -0.34
21 AT2G18480 Major facilitator superfamily protein 0.83 0.33 -0.31
22 AT3G21700 Ras-related small GTP-binding family protein ATSGP2, SGP2 0.83 0.32 -0.31
23 AT2G20920 Protein of unknown function (DUF3353) 0.83 0.32 -0.33
24 AT3G15580 Ubiquitin-like superfamily protein AUTOPHAGY 8H, AUTOPHAGY 8I 0.83 0.3 -0.32
25 AT2G25625 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: LP.06 six leaves visible, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; Has 24 Blast hits to 24 proteins in 9 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.82 0.3 -0.32
26 AT3G43230 RING/FYVE/PHD-type zinc finger family protein 0.82 0.31 -0.32
27 AT4G36040 Chaperone DnaJ-domain superfamily protein DnaJ11 0.82 0.3 -0.32
28 AT4G27990 YGGT family protein ATYLMG1-2, YLMG1-2 0.82 0.31 -0.31
29 AT1G23060 BEST Arabidopsis thaliana protein match is: TPX2 (targeting
protein for Xklp2) protein family (TAIR:AT1G70950.1); Has
449 Blast hits to 419 proteins in 98 species: Archae - 0;
Bacteria - 40; Metazoa - 139; Fungi - 21; Plants - 158;
Viruses - 3; Other Eukaryotes - 88 (source: NCBI BLink).		 0.82 0.3 -0.32
30 AT1G49300 RAB GTPase homolog G3E ARABIDOPSIS RAB GTPASE HOMOLOG 7,
ARABIDOPSIS RAB GTPASE HOMOLOG
G3E, RAB GTPase homolog G3E		 0.82 0.34 -0.34
31 AT2G18950 homogentisate phytyltransferase 1 HOMOGENTISATE PHYTYLTRANSFERASE,
homogentisate phytyltransferase 1,
TPT1, VITAMIN E 2		 0.82 0.3 -0.31
32 AT5G43430 electron transfer flavoprotein beta electron transfer flavoprotein
beta		 0.82 0.3 -0.32
33 AT3G44100 MD-2-related lipid recognition domain-containing protein 0.81 0.32 -0.29
34 AT3G53960 Major facilitator superfamily protein 0.81 0.35 -0.31
35 AT3G05010 Protein of unknown function, transmembrane-40 0.81 0.31 -0.32
36 AT4G15470 Bax inhibitor-1 family protein 0.81 0.31 -0.31
37 AT3G14050 RELA/SPOT homolog 2 RELA-SPOT HOMOLOG 2, RELA/SPOT
HOMOLOG 2, RELA/SPOT homolog 2		 0.81 0.3 -0.32
38 AT5G24420 6-phosphogluconolactonase 5 6-phosphogluconolactonase 5 0.81 0.28 -0.32
39 AT4G13270 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.81 0.31 -0.32
40 AT4G33540 metallo-beta-lactamase family protein 0.81 0.32 -0.31
41 AT5G48020 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.8 0.32 -0.33
42 AT1G21760 F-box protein 7 F-BOX PROTEIN 7, F-box protein 7 0.8 0.33 -0.31
43 AT5G52890 AT hook motif-containing protein -0.8 0.32 -0.33
44 AT3G04480 endoribonucleases -0.8 0.31 -0.32
45 AT1G24280 glucose-6-phosphate dehydrogenase 3 glucose-6-phosphate dehydrogenase
3		 -0.8 0.3 -0.3
46 AT3G51895 sulfate transporter 3;1 AST12, sulfate transporter 3;1 0.8 0.33 -0.31
47 AT3G16785 phospholipase D P1 PHOSPHOLIPASE D ZETA 1,
phospholipase D P1, PHOSPHOLIPASE
D ZETA1, PLDZETA1		 0.8 0.32 -0.3
48 AT5G47730 Sec14p-like phosphatidylinositol transfer family protein 0.8 0.33 -0.31
49 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.8 0.32 -0.29
50 AT4G33090 aminopeptidase M1 aminopeptidase M1, AMINOPEPTIDASE
M1		 0.8 0.33 -0.3
51 AT5G48800 Phototropic-responsive NPH3 family protein -0.8 0.31 -0.36
52 AT3G47070 LOCATED IN: thylakoid, chloroplast thylakoid membrane,
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9
(InterPro:IPR021584); Has 37 Blast hits to 37 proteins in
10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.8 0.31 -0.31
53 AT1G72710 casein kinase 1-like protein 2 casein kinase 1-like protein 2 0.79 0.3 -0.3
54 AT3G28007 Nodulin MtN3 family protein AtSWEET4, SWEET4 0.79 0.29 -0.33
55 AT5G47120 BAX inhibitor 1 ARABIDOPSIS BAX INHIBITOR 1, BAX
inhibitor 1, BI-1, BAX inhibitor 1		 0.79 0.31 -0.32
56 AT3G51730 saposin B domain-containing protein 0.79 0.31 -0.32
57 AT3G62770 Transducin/WD40 repeat-like superfamily protein autophagy 18a, autophagy 18a 0.79 0.3 -0.31
58 AT5G27280 Zim17-type zinc finger protein 0.79 0.3 -0.32
59 AT4G11570 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.79 0.32 -0.31
60 AT5G65860 ankyrin repeat family protein -0.79 0.33 -0.33
61 AT3G56620 nodulin MtN21 /EamA-like transporter family protein 0.79 0.28 -0.34
62 AT5G44900 Toll-Interleukin-Resistance (TIR) domain family protein -0.78 0.32 -0.32
63 AT1G75300 NmrA-like negative transcriptional regulator family protein 0.78 0.31 -0.31
64 AT1G12050 fumarylacetoacetase, putative 0.78 0.32 -0.31
65 AT2G37860 Protein of unknown function (DUF3411) LOWER CELL DENSITY 1 -0.78 0.31 -0.3
66 AT1G28960 nudix hydrolase homolog 15 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 15, nudix
hydrolase homolog 15, nudix
hydrolase homolog 15		 0.78 0.32 -0.31
67 AT5G48180 nitrile specifier protein 5 nitrile specifier protein 5 0.78 0.29 -0.3
68 AT2G27820 prephenate dehydratase 1 arogenate dehydratase 3,
prephenate dehydratase 1		 0.78 0.31 -0.33
69 AT2G14460 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.78 0.33 -0.32
70 AT3G29350 histidine-containing phosphotransmitter 2 histidine-containing
phosphotransmitter 2		 0.78 0.31 -0.34
71 AT1G19950 HVA22-like protein H (ATHVA22H) HVA22-like protein H (ATHVA22H) -0.78 0.31 -0.32
72 AT4G18140 SCP1-like small phosphatase 4b SCP1-like small phosphatase 4b 0.78 0.31 -0.33
73 AT1G32790 CTC-interacting domain 11 CTC-interacting domain 11 0.78 0.32 -0.32
74 AT3G55280 ribosomal protein L23AB RIBOSOMAL PROTEIN L23A2, ribosomal
protein L23AB		 -0.78 0.31 -0.33
75 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727		 0.78 0.32 -0.31
76 AT1G75850 VPS35 homolog B VPS35 homolog B 0.78 0.32 -0.31
77 AT5G56190 Transducin/WD40 repeat-like superfamily protein 0.78 0.31 -0.31
78 AT1G19640 jasmonic acid carboxyl methyltransferase jasmonic acid carboxyl
methyltransferase		 0.77 0.33 -0.29
79 AT1G22650 Plant neutral invertase family protein alkaline/neutral invertase D -0.77 0.31 -0.32
80 AT1G01260 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.77 0.33 -0.31
81 AT1G02970 WEE1 kinase homolog ATWEE1, WEE1 kinase homolog -0.77 0.33 -0.34
82 AT1G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits
to 71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.3 -0.31
83 AT3G57800 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.77 0.3 -0.32
84 AT5G06370 NC domain-containing protein-related 0.77 0.31 -0.33
85 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 -0.76 0.32 -0.32
86 AT5G04950 nicotianamine synthase 1 ARABIDOPSIS THALIANA NICOTIANAMINE
SYNTHASE 1, nicotianamine synthase
1		 -0.76 0.32 -0.32
87 AT3G57490 Ribosomal protein S5 family protein -0.76 0.32 -0.3
88 AT4G35440 chloride channel E ATCLC-E, chloride channel E,
CHLORIDE CHANNEL E		 -0.76 0.32 -0.32
89 AT4G23290 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 cysteine-rich RLK (RECEPTOR-like
protein kinase) 21		 -0.76 0.32 -0.31
90 AT3G53940 Mitochondrial substrate carrier family protein -0.75 0.31 -0.3
91 AT4G37540 LOB domain-containing protein 39 LOB domain-containing protein 39 -0.75 0.29 -0.32
92 AT5G50310 Galactose oxidase/kelch repeat superfamily protein -0.75 0.31 -0.31
93 AT1G52530 CONTAINS InterPro DOMAIN/s: Hus1-like protein
(InterPro:IPR007150); Has 129 Blast hits to 128 proteins in
49 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi -
10; Plants - 47; Viruses - 0; Other Eukaryotes - 15
(source: NCBI BLink).		 -0.75 0.34 -0.32
94 AT1G26330 DNA binding -0.74 0.31 -0.34
95 AT4G05400 copper ion binding -0.74 0.33 -0.34
96 AT4G28100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
anchored to plasma membrane, anchored to membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.74 0.31 -0.33
97 AT1G65490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G65486.1); Has 23 Blast hits to 23 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.31 -0.32
98 AT2G37190 Ribosomal protein L11 family protein -0.74 0.32 -0.32
99 AT3G16080 Zinc-binding ribosomal protein family protein -0.74 0.3 -0.29
100 AT2G39700 expansin A4 ATEXP4, expansin A4, ATHEXP ALPHA
1.6, expansin A4		 -0.74 0.33 -0.3
101 AT4G39630 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.32 -0.32
102 AT5G15520 Ribosomal protein S19e family protein -0.73 0.32 -0.32
103 AT4G32800 Integrase-type DNA-binding superfamily protein -0.73 0.3 -0.3
104 AT1G69580 Homeodomain-like superfamily protein -0.73 0.31 -0.31
105 AT4G32605 Mitochondrial glycoprotein family protein -0.73 0.3 -0.3
106 AT2G47790 Transducin/WD40 repeat-like superfamily protein -0.73 0.32 -0.33
107 AT3G26050 TPX2 (targeting protein for Xklp2) protein family -0.72 0.31 -0.33
108 AT2G33370 Ribosomal protein L14p/L23e family protein -0.72 0.34 -0.33
109 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B -0.72 0.31 -0.32
110 AT3G44750 histone deacetylase 3 ATHD2A, HISTONE DEACETYLASE 2A,
histone deacetylase 3, HDT1		 -0.72 0.33 -0.31
111 AT2G37600 Ribosomal protein L36e family protein -0.72 0.32 -0.34
112 AT1G61390 S-locus lectin protein kinase family protein -0.72 0.32 -0.32
113 AT4G17340 tonoplast intrinsic protein 2;2 DELTA-TIP2, tonoplast intrinsic
protein 2;2		 -0.72 0.31 -0.31
114 AT3G07580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48335.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.72 0.31 -0.31
115 AT2G41940 zinc finger protein 8 zinc finger protein 8 -0.72 0.31 -0.31
116 AT4G01720 WRKY family transcription factor AtWRKY47, WRKY47 -0.72 0.31 -0.34
117 AT2G28250 Protein kinase superfamily protein NCRK -0.71 0.32 -0.33
118 AT5G15830 basic leucine-zipper 3 basic leucine-zipper 3, basic
leucine-zipper 3		 -0.71 0.31 -0.32
119 AT1G76870 BEST Arabidopsis thaliana protein match is:
sequence-specific DNA binding transcription factors
(TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in
76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi
- 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126
(source: NCBI BLink).		 -0.71 0.31 -0.32
120 AT5G03840 PEBP (phosphatidylethanolamine-binding protein) family
protein		 TERMINAL FLOWER 1, TERMINAL FLOWER
1		 -0.71 0.33 -0.3
121 AT1G78750 F-box/RNI-like superfamily protein -0.71 0.29 -0.31
122 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein -0.71 0.32 -0.31
123 AT3G60580 C2H2-like zinc finger protein -0.7 0.31 -0.32
124 AT1G34065 S-adenosylmethionine carrier 2 S-adenosylmethionine carrier 2 -0.7 0.33 -0.29
125 AT3G26320 cytochrome P450, family 71, subfamily B, polypeptide 36 cytochrome P450, family 71,
subfamily B, polypeptide 36		 -0.7 0.31 -0.32
126 AT5G63540 Domain of unknown function (DUF1767) ATRMI1, BLAP75, RECQ MEDIATED
INSTABILITY 1		 -0.7 0.31 -0.32
127 AT1G73640 RAB GTPase homolog A6A RAB GTPase homolog A6A, RAB GTPase
homolog A6A		 -0.7 0.29 -0.32
128 AT1G64405 unknown protein; Has 13 Blast hits to 13 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.3
129 AT3G54260 TRICHOME BIREFRINGENCE-LIKE 36 TRICHOME BIREFRINGENCE-LIKE 36 -0.7 0.31 -0.32
130 AT5G07820 Plant calmodulin-binding protein-related -0.7 0.31 -0.33
131 AT1G71890 Major facilitator superfamily protein SUCROSE-PROTON SYMPORTER 5, SUC5 -0.7 0.34 -0.31
132 AT5G67450 zinc-finger protein 1 zinc-finger protein 1, zinc-finger
protein 1		 -0.7 0.3 -0.31
133 AT2G26050 Protein of unknown function (DUF1644) -0.7 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0190 O-acetyl-L-Serine - O-acetyl-L-Serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		0.8 0.41 -0.48 C0190