AT3G54980 : -
Query Information
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AGICode AT3G54980
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54980 Pentatricopeptide repeat (PPR) superfamily protein 1 0.31 -0.32
2 AT3G61240 DEA(D/H)-box RNA helicase family protein 0.81 0.3 -0.31
3 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.81 0.31 -0.3
4 AT2G21390 Coatomer, alpha subunit 0.8 0.29 -0.31
5 AT5G64420 DNA polymerase V family 0.8 0.3 -0.32
6 AT5G09330 NAC domain containing protein 82 NAC domain containing protein 82,
NAC domain containing protein 82,
VND-interacting 1		 0.78 0.32 -0.33
7 AT5G22320 Leucine-rich repeat (LRR) family protein 0.78 0.33 -0.3
8 AT1G06900 Insulinase (Peptidase family M16) family protein 0.78 0.32 -0.31
9 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.77 0.31 -0.33
10 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.3 -0.33
11 AT1G22730 MA3 domain-containing protein 0.76 0.29 -0.31
12 AT3G26370 O-fucosyltransferase family protein 0.76 0.32 -0.31
13 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein 0.75 0.32 -0.29
14 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2		 0.75 0.3 -0.32
15 AT3G59020 ARM repeat superfamily protein 0.74 0.32 -0.35
16 AT1G29880 glycyl-tRNA synthetase / glycine--tRNA ligase 0.73 0.33 -0.3
17 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.71 0.3 -0.31
18 AT1G70590 F-box family protein -0.71 0.32 -0.33
19 AT5G61370 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.32 -0.32
20 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.71 0.29 -0.31
21 AT1G43690 ubiquitin interaction motif-containing protein 0.71 0.32 -0.32
22 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.35 -0.32
23 AT1G17630 Pentatricopeptide repeat (PPR-like) superfamily protein 0.71 0.34 -0.33
24 AT5G46920 Intron maturase, type II family protein 0.71 0.3 -0.31
25 AT1G26850 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.33 -0.31
26 AT5G39900 Small GTP-binding protein 0.7 0.31 -0.31
27 AT3G51320 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.29 -0.32
28 AT4G23640 Potassium transporter family protein ATKT3, KUP4, TINY ROOT HAIR 1 0.7 0.33 -0.32
29 AT5G10840 Endomembrane protein 70 protein family 0.7 0.3 -0.31
30 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 0.7 0.33 -0.3
31 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.7 0.33 -0.31
32 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 0.7 0.3 -0.29
33 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.69 0.31 -0.31
34 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.69 0.29 -0.31
35 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.69 0.33 -0.3
36 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 0.68 0.33 -0.31
37 AT3G15590 Tetratricopeptide repeat (TPR)-like superfamily protein 0.68 0.29 -0.32
38 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.3 -0.3
39 AT2G38770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 EMBRYO DEFECTIVE 2765 0.68 0.32 -0.31
40 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.68 0.33 -0.32
41 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.3 -0.33
42 AT5G06460 ubiquitin activating enzyme 2 ARABIDOPSIS THALIANA UBIQUITIN
ACTIVATING ENZYME 2, ubiquitin
activating enzyme 2		 0.67 0.32 -0.32
43 AT3G44530 homolog of histone chaperone HIRA homolog of histone chaperone HIRA 0.67 0.31 -0.3
44 AT4G28400 Protein phosphatase 2C family protein -0.67 0.31 -0.32
45 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.67 0.28 -0.32
46 AT1G78200 Protein phosphatase 2C family protein -0.67 0.33 -0.31
47 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 -0.66 0.3 -0.32
48 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.66 0.34 -0.33
49 AT1G77930 Chaperone DnaJ-domain superfamily protein -0.65 0.32 -0.32
50 AT4G30520 Leucine-rich repeat protein kinase family protein SENESCENCE-ASSOCIATED
RECEPTOR-LIKE KINASE		 -0.64 0.34 -0.33
51 AT4G27657 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G54145.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.64 0.31 -0.31
52 AT3G24360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.64 0.32 -0.33
53 AT2G28305 Putative lysine decarboxylase family protein ATLOG1, LONELY GUY 1 -0.64 0.32 -0.3
54 AT5G45630 Protein of unknown function, DUF584 -0.63 0.32 -0.32
55 AT5G10310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.31 -0.29
56 AT5G58120 Disease resistance protein (TIR-NBS-LRR class) family -0.62 0.33 -0.3
57 AT5G44880 transposable element gene -0.62 0.29 -0.3
58 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.61 0.33 -0.29
59 AT4G31270 sequence-specific DNA binding transcription factors -0.61 0.33 -0.33
60 AT4G27280 Calcium-binding EF-hand family protein -0.61 0.33 -0.32
61 AT1G37000 Beta-galactosidase related protein -0.6 0.29 -0.33
62 AT2G05270 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.29 -0.3
63 AT5G62570 Calmodulin binding protein-like -0.6 0.34 -0.29
64 AT5G13880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G47920.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.59 0.3 -0.32
65 AT4G11280 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 1-aminocyclopropane-1-carboxylic
acid (acc) synthase 6, ATACS6		 -0.59 0.33 -0.33
66 AT2G36920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02870.1); Has 13 Blast hits to 11
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.31 -0.33
67 AT5G52540 Protein of unknown function (DUF819) -0.59 0.3 -0.32
68 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 -0.59 0.32 -0.32
69 AT4G01950 glycerol-3-phosphate acyltransferase 3 ATGPAT3, glycerol-3-phosphate
acyltransferase 3		 -0.59 0.31 -0.32
70 AT2G22500 uncoupling protein 5 PLANT UNCOUPLING MITOCHONDRIAL
PROTEIN 5, DICARBOXYLATE CARRIER
1, uncoupling protein 5		 -0.59 0.33 -0.3
71 AT3G17230 invertase/pectin methylesterase inhibitor family protein -0.58 0.32 -0.32
72 AT5G14400 cytochrome P450, family 724, subfamily A, polypeptide 1 cytochrome P450, family 724,
subfamily A, polypeptide 1		 -0.58 0.31 -0.32
73 AT1G74450 Protein of unknown function (DUF793) -0.58 0.33 -0.32
74 AT1G78790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF2008
(InterPro:IPR018552); Has 27 Blast hits to 27 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.3 -0.33
75 AT1G62450 Immunoglobulin E-set superfamily protein -0.57 0.33 -0.31
76 AT3G16280 Integrase-type DNA-binding superfamily protein -0.57 0.34 -0.3
77 AT2G02820 myb domain protein 88 myb domain protein 88, myb domain
protein 88		 -0.57 0.34 -0.3
78 AT3G46620 zinc finger (C3HC4-type RING finger) family protein -0.57 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
79 C0176 MST_2406.9 - - - -0.68 0.45 -0.43
80 C0169 MST_2105.7 - - - -0.67 0.49 -0.45