AT3G54640 : TRYPTOPHAN-REQUIRING 3
Query Information
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AGICode AT3G54640
Description tryptophan synthase alpha chain
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54640 tryptophan synthase alpha chain TRYPTOPHAN-REQUIRING 3, tryptophan
synthase alpha chain		 1 0.33 -0.32
2 AT2G04400 Aldolase-type TIM barrel family protein 0.9 0.31 -0.33
3 AT2G24200 Cytosol aminopeptidase family protein 0.88 0.32 -0.3
4 AT5G05730 anthranilate synthase alpha subunit 1 A-METHYL TRYPTOPHAN RESISTANT 1,
anthranilate synthase alpha
subunit 1, JASMONATE-INDUCED
DEFECTIVE LATERAL ROOT 1,
TRYPTOPHAN BIOSYNTHESIS 5, WEAK
ETHYLENE INSENSITIVE 2		 0.86 0.31 -0.34
5 AT5G25590 Protein of unknown function (DUF630 and DUF632) -0.85 0.32 -0.31
6 AT4G35630 phosphoserine aminotransferase phosphoserine aminotransferase 0.84 0.31 -0.31
7 AT1G09850 xylem bark cysteine peptidase 3 xylem bark cysteine peptidase 3 0.83 0.32 -0.31
8 AT4G35830 aconitase 1 aconitase 1 0.83 0.32 -0.32
9 AT3G19260 LAG1 homologue 2 LONGEVITY ASSURANCE GENE1 HOMOLOG
2, LAG1 homologue 2		 0.82 0.32 -0.31
10 AT2G34680 Outer arm dynein light chain 1 protein AUXIN-INDUCED IN ROOT CULTURES 9 -0.82 0.29 -0.3
11 AT5G27380 glutathione synthetase 2 glutathione synthetase 2, GSHB 0.81 0.32 -0.31
12 AT3G45130 lanosterol synthase 1 lanosterol synthase 1 0.8 0.31 -0.33
13 AT3G59760 O-acetylserine (thiol) lyase isoform C ARABIDOPSIS THALIANA
CYSTEINSYNTHASE-C, O-acetylserine
(thiol) lyase isoform C		 0.8 0.29 -0.3
14 AT2G37110 PLAC8 family protein 0.79 0.34 -0.31
15 AT5G17990 tryptophan biosynthesis 1 PHOSPHORIBOSYLANTHRANILATE
TRANSFERASE 1, tryptophan
biosynthesis 1		 0.79 0.32 -0.34
16 AT4G26910 Dihydrolipoamide succinyltransferase 0.79 0.33 -0.3
17 AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 cytochrome P450, family 79,
subfamily B, polypeptide 2		 0.79 0.32 -0.32
18 AT3G28930 AIG2-like (avirulence induced gene) family protein AVRRPT2-INDUCED GENE 2 0.79 0.3 -0.31
19 AT4G25900 Galactose mutarotase-like superfamily protein 0.78 0.32 -0.32
20 AT1G10700 phosphoribosyl pyrophosphate (PRPP) synthase 3 phosphoribosyl pyrophosphate
(PRPP) synthase 3		 0.78 0.3 -0.3
21 AT2G20420 ATP citrate lyase (ACL) family protein 0.78 0.31 -0.29
22 AT2G38860 Class I glutamine amidotransferase-like superfamily protein YLS5 0.78 0.32 -0.31
23 AT2G41890 curculin-like (mannose-binding) lectin family protein / PAN
domain-containing protein		 -0.78 0.33 -0.35
24 AT3G28480 Oxoglutarate/iron-dependent oxygenase 0.78 0.32 -0.32
25 AT4G18600 SCAR family protein WASP (WISKOTT-ALDRICH SYNDROME
PROTEIN)-FAMILY VERPROLIN
HOMOLOGOUS PROTEIN 5, SCARL, WAVE5		 -0.77 0.31 -0.32
26 AT4G31500 cytochrome P450, family 83, subfamily B, polypeptide 1 ALTERED TRYPTOPHAN REGULATION 4,
cytochrome P450, family 83,
subfamily B, polypeptide 1, RED
ELONGATED 1, RUNT 1, SUPERROOT 2		 0.77 0.31 -0.31
27 AT4G26520 Aldolase superfamily protein -0.77 0.31 -0.33
28 AT5G45410 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits
to 124 proteins in 34 species: Archae - 2; Bacteria - 31;
Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.32 -0.3
29 AT2G17130 isocitrate dehydrogenase subunit 2 isocitrate dehydrogenase II,
isocitrate dehydrogenase subunit 2		 0.77 0.3 -0.29
30 AT3G26830 Cytochrome P450 superfamily protein CYP71B15, PHYTOALEXIN DEFICIENT 3 0.77 0.33 -0.31
31 AT1G70760 inorganic carbon transport protein-related CHLORORESPIRATORY REDUCTION 23,
NADH dehydrogenase-like complex L		 -0.77 0.32 -0.33
32 AT3G08640 Protein of unknown function (DUF3411) 0.76 0.34 -0.32
33 AT2G22670 indoleacetic acid-induced protein 8 indoleacetic acid-induced protein
8		 -0.76 0.32 -0.32
34 AT3G01500 carbonic anhydrase 1 BETA CARBONIC ANHYDRASE 1,
ARABIDOPSIS THALIANA SALICYLIC
ACID-BINDING PROTEIN 3, carbonic
anhydrase 1, SALICYLIC
ACID-BINDING PROTEIN 3		 -0.76 0.31 -0.32
35 AT4G34180 Cyclase family protein 0.76 0.31 -0.31
36 AT5G13290 Protein kinase superfamily protein CORYNE, SUPPRESSOR OF LLP1 2 -0.76 0.33 -0.31
37 AT3G51290 Protein of unknown function (DUF630) ;Protein of unknown
function (DUF632)		 -0.76 0.33 -0.3
38 AT5G20320 dicer-like 4 DICER-LIKE 4, dicer-like 4 -0.76 0.33 -0.31
39 AT2G39560 Putative membrane lipoprotein -0.75 0.32 -0.32
40 AT1G67810 sulfur E2 sulfur E2 0.75 0.32 -0.33
41 AT5G01500 thylakoid ATP/ADP carrier thylakoid ATP/ADP carrier 0.75 0.32 -0.31
42 AT1G65010 Plant protein of unknown function (DUF827) -0.75 0.33 -0.31
43 AT1G22410 Class-II DAHP synthetase family protein 0.75 0.31 -0.33
44 AT3G62580 Late embryogenesis abundant protein (LEA) family protein 0.75 0.3 -0.31
45 AT4G23100 glutamate-cysteine ligase ATECS1, CADMIUM SENSITIVE 2,
glutamate-cysteine ligase, GSHA,
PHYTOALEXIN DEFICIENT 2, ROOT
MERISTEMLESS 1		 0.75 0.3 -0.31
46 AT5G67310 cytochrome P450, family 81, subfamily G, polypeptide 1 cytochrome P450, family 81,
subfamily G, polypeptide 1		 0.75 0.29 -0.3
47 AT4G34200 D-3-phosphoglycerate dehydrogenase embryo sac development arrest 9 0.75 0.3 -0.32
48 AT3G54110 plant uncoupling mitochondrial protein 1 ARABIDOPSIS THALIANA PLANT
UNCOUPLING MITOCHONDRIAL PROTEIN
1, ARABIDOPSIS THALIANA UNCOUPLING
PROTEIN 1, plant uncoupling
mitochondrial protein 1, UCP,
UNCOUPLING PROTEIN 1		 0.75 0.31 -0.3
49 AT3G20920 translocation protein-related 0.74 0.32 -0.32
50 AT2G30490 cinnamate-4-hydroxylase CINNAMATE 4-HYDROXYLASE,
cinnamate-4-hydroxylase, CYP73A5,
REDUCED EPRDERMAL FLUORESCENCE 3		 0.74 0.29 -0.31
51 AT2G30870 glutathione S-transferase PHI 10 ARABIDOPSIS THALIANA GLUTATHIONE
S-TRANSFERASE PHI 10, ATGSTF4,
EARLY DEHYDRATION-INDUCED 13,
glutathione S-transferase PHI 10		 0.74 0.3 -0.33
52 AT1G32520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; Has 143 Blast hits to 142
proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa -
39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink).		 -0.74 0.33 -0.32
53 AT5G36220 cytochrome p450 81d1 cytochrome P450, family 81,
subfamily D, polypeptide 1,
CYTOCHROME P450 91A1		 0.74 0.33 -0.32
54 AT1G02110 Protein of unknown function (DUF630 and DUF632) -0.74 0.33 -0.32
55 AT5G37070 Protein of unknown function, DUF538 0.74 0.32 -0.31
56 AT2G39330 jacalin-related lectin 23 jacalin-related lectin 23 0.74 0.34 -0.34
57 AT5G14740 carbonic anhydrase 2 BETA CARBONIC ANHYDRASE 2,
CARBONIC ANHYDRASE 18, carbonic
anhydrase 2		 -0.74 0.32 -0.31
58 AT1G54350 ABC transporter family protein ATP-binding cassette D2 -0.74 0.31 -0.32
59 AT4G00860 Protein of unknown function (DUF1138) Arabidopsis thaliana ozone-induced
protein 1, ATOZI1		 0.74 0.33 -0.32
60 AT1G67040 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.31 -0.31
61 AT5G26850 Uncharacterized protein -0.73 0.31 -0.35
62 AT3G50240 ATP binding microtubule motor family protein KICP-02 -0.73 0.33 -0.31
63 AT3G19660 unknown protein; Has 16 Blast hits to 16 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.31 -0.32
64 AT3G22520 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast, chloroplast
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast
hits to 703 proteins in 179 species: Archae - 14; Bacteria
- 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses -
0; Other Eukaryotes - 145 (source: NCBI BLink).		 -0.73 0.32 -0.3
65 AT1G74100 sulfotransferase 16 SULFOTRANSFERASE 16, ARABIDOPSIS
SULFOTRANSFERASE 5A, CORONATINE
INDUCED-7, sulfotransferase 16		 0.73 0.31 -0.32
66 AT1G22180 Sec14p-like phosphatidylinositol transfer family protein 0.73 0.29 -0.32
67 AT5G62575 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G47833.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 succinate dehydrogenase 7,
succinate dehydrogenase 7B		 0.73 0.29 -0.3
68 AT4G30530 Class I glutamine amidotransferase-like superfamily protein gamma-glutamyl peptidase 1 0.73 0.3 -0.31
69 AT2G39470 PsbP-like protein 2 Photosynthetic NDH subcomplex L
1, PsbP-like protein 2		 -0.73 0.31 -0.32
70 AT1G09560 germin-like protein 5 germin-like protein 5 0.73 0.33 -0.33
71 AT1G19130 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold
(InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins
in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19;
Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes -
304 (source: NCBI BLink).		 0.73 0.34 -0.33
72 AT5G55540 tornado 1 LOPPED 1, TORNADO 1 -0.72 0.3 -0.34
73 AT1G19670 chlorophyllase 1 chlorophyllase 1,
CORONATINE-INDUCED PROTEIN 1,
chlorophyllase 1,
CORONATINE-INDUCED PROTEIN 1		 0.72 0.31 -0.3
74 AT3G47540 Chitinase family protein 0.72 0.32 -0.32
75 AT3G22150 Tetratricopeptide repeat (TPR)-like superfamily protein -0.72 0.33 -0.3
76 AT3G04450 Homeodomain-like superfamily protein -0.72 0.31 -0.3
77 AT5G54960 pyruvate decarboxylase-2 pyruvate decarboxylase-2 0.72 0.31 -0.32
78 AT3G23570 alpha/beta-Hydrolases superfamily protein 0.71 0.33 -0.29
79 AT3G24560 Adenine nucleotide alpha hydrolases-like superfamily
protein		 RASPBERRY 3 -0.71 0.3 -0.32
80 AT3G26932 dsRNA-binding protein 3 dsRNA-binding protein 3 -0.71 0.31 -0.32
81 AT4G24350 Phosphorylase superfamily protein 0.71 0.34 -0.31
82 AT3G27890 NADPH:quinone oxidoreductase NADPH:quinone oxidoreductase 0.71 0.31 -0.3
83 AT5G13980 Glycosyl hydrolase family 38 protein -0.71 0.29 -0.29
84 AT3G23070 CRM family member 3A ATCFM3A, CRM family member 3A -0.71 0.32 -0.31
85 AT1G27850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G40070.1); Has 9215
Blast hits to 5316 proteins in 473 species: Archae - 6;
Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539;
Viruses - 143; Other Eukaryotes - 2652 (source: NCBI
BLink).		 -0.71 0.29 -0.32
86 AT3G49620 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 DARK INDUCIBLE 11 0.71 0.3 -0.35
87 ATCG00810 ribosomal protein L22 ribosomal protein L22 -0.71 0.31 -0.32
88 AT5G50370 Adenylate kinase family protein 0.71 0.32 -0.31
89 AT5G03630 Pyridine nucleotide-disulphide oxidoreductase family
protein		 ATMDAR2 0.7 0.32 -0.33
90 AT3G23550 MATE efflux family protein 0.7 0.32 -0.34
91 AT1G74880 NAD(P)H:plastoquinone dehydrogenase complex subunit O NAD(P)H:plastoquinone
dehydrogenase complex subunit O,
NADH dehydrogenase-like complex )		 -0.7 0.31 -0.32
92 AT5G37510 NADH-ubiquinone dehydrogenase, mitochondrial, putative CI76, embryo defective 1467 0.7 0.32 -0.3
93 AT2G39930 isoamylase 1 ARABIDOPSIS THALIANA ISOAMYLASE 1,
isoamylase 1		 -0.7 0.34 -0.31
94 ATCG00820 ribosomal protein S19 ribosomal protein S19 -0.7 0.32 -0.33
95 AT1G15180 MATE efflux family protein -0.7 0.31 -0.3
96 AT3G22790 Kinase interacting (KIP1-like) family protein -0.7 0.31 -0.32
97 AT3G60540 Preprotein translocase Sec, Sec61-beta subunit protein 0.7 0.33 -0.3
98 AT3G12290 Amino acid dehydrogenase family protein 0.7 0.3 -0.32
99 AT1G70100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits
to 2309 proteins in 344 species: Archae - 6; Bacteria -
672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses -
37; Other Eukaryotes - 783 (source: NCBI BLink).		 -0.7 0.31 -0.32
100 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family
protein		 -0.7 0.31 -0.32
101 AT5G12010 unknown protein; INVOLVED IN: response to salt stress;
LOCATED IN: chloroplast, plasma membrane, membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.7 0.34 -0.31
102 AT2G47690 NADH-ubiquinone oxidoreductase-related 0.7 0.32 -0.31
103 AT5G36880 acetyl-CoA synthetase acetyl-CoA synthetase 0.7 0.32 -0.31
104 AT4G16340 guanyl-nucleotide exchange factors;GTPase binding;GTP
binding		 SPIKE1 -0.69 0.31 -0.33
105 AT3G04340 FtsH extracellular protease family embryo defective 2458 -0.69 0.32 -0.31
106 AT2G35310 Transcriptional factor B3 family protein -0.69 0.3 -0.32
107 AT1G71810 Protein kinase superfamily protein -0.69 0.35 -0.32
108 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 -0.69 0.31 -0.31
109 AT1G24290 AAA-type ATPase family protein -0.69 0.33 -0.32
110 AT2G01910 Microtubule associated protein (MAP65/ASE1) family protein ATMAP65-6, MAP65-6 -0.68 0.31 -0.33
111 AT2G19930 RNA-dependent RNA polymerase family protein -0.68 0.3 -0.32
112 AT2G17020 F-box/RNI-like superfamily protein -0.68 0.31 -0.32
113 AT5G49555 FAD/NAD(P)-binding oxidoreductase family protein -0.68 0.31 -0.33
114 AT5G49430 WD40/YVTN repeat-like-containing domain;Bromodomain -0.67 0.3 -0.31
115 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.67 0.31 -0.33
116 AT1G01790 K+ efflux antiporter 1 K+ EFFLUX ANTIPORTER 1, K+ efflux
antiporter 1		 -0.67 0.32 -0.3
117 AT3G61080 Protein kinase superfamily protein -0.67 0.3 -0.28
118 AT3G44050 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.67 0.33 -0.32
119 AT4G33470 histone deacetylase 14 ATHDA14, histone deacetylase 14 -0.67 0.32 -0.34
120 AT4G00730 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 ARABIDOPSIS THALIANA HOMEODOMAIN
PROTEIN, ANTHOCYANINLESS 2		 -0.67 0.31 -0.29
121 AT5G62670 H(+)-ATPase 11 H(+)-ATPase 11, H(+)-ATPase 11 -0.67 0.32 -0.31
122 AT3G25500 formin homology 1 formin homology 1, AHF1,
ARABIDOPSIS THALIANA FORMIN
HOMOLOGY 1, FORMIN HOMOLOGY 1		 -0.67 0.31 -0.32
123 AT5G03870 Glutaredoxin family protein -0.67 0.31 -0.33
124 AT4G11450 Protein of unknown function (DUF3527) -0.66 0.31 -0.32
125 AT4G14200 Pentatricopeptide repeat (PPR) superfamily protein -0.66 0.3 -0.32
126 AT5G26790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.32 -0.32
127 AT3G03300 dicer-like 2 DICER-LIKE 2, dicer-like 2 -0.66 0.31 -0.33
128 AT2G35800 mitochondrial substrate carrier family protein S-adenosyl methionine
transporter-like		 -0.66 0.33 -0.3
129 AT5G24490 30S ribosomal protein, putative -0.66 0.3 -0.31
130 AT5G12150 Rho GTPase activation protein (RhoGAP) with PH domain -0.66 0.29 -0.33
131 AT3G63300 FORKED 1 FORKED 1 -0.66 0.31 -0.33
132 AT1G74160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits
to 2217 proteins in 314 species: Archae - 0; Bacteria -
264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses -
34; Other Eukaryotes - 1149 (source: NCBI BLink).		 -0.66 0.33 -0.3
133 AT1G49890 Family of unknown function (DUF566) QWRF domain containing 2 -0.66 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0063 Campesterol - Campesterol brassinosteroid biosynthesis I,
brassinosteroid biosynthesis II,
plant sterol biosynthesis,
brassinosteroid biosynthesis III 		-0.76 0.45 -0.44 C0063
135 C0253 Threonic acid-1,4-lactone D,L-Threonic acid-1,4-lactone - - -0.74 0.43 -0.46