AT3G54720 : ALTERED MERISTEM PROGRAM 1
Query Information
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AGICode AT3G54720
Description Peptidase M28 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54720 Peptidase M28 family protein ALTERED MERISTEM PROGRAM 1,
CONSTITUTIVE MORPHOGENESIS 2,
HAUPTLING, Multifolia, PRIMORDIA
TIMING		 1 0.32 -0.31
2 AT3G04630 WVD2-like 1 WVD2-like 1 0.77 0.33 -0.34
3 AT5G61760 inositol polyphosphate kinase 2 beta ARABIDOPSIS THALIANA INOSITOL
POLYPHOSPHATE KINASE 2 BETA,
INOSITOL POLYPHOSPHATE KINASE 2
BETA, inositol polyphosphate
kinase 2 beta		 -0.75 0.31 -0.33
4 AT5G12010 unknown protein; INVOLVED IN: response to salt stress;
LOCATED IN: chloroplast, plasma membrane, membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.75 0.31 -0.34
5 AT2G01910 Microtubule associated protein (MAP65/ASE1) family protein ATMAP65-6, MAP65-6 0.74 0.3 -0.32
6 AT4G29080 phytochrome-associated protein 2 indole-3-acetic acid inducible 27,
phytochrome-associated protein 2		 0.74 0.33 -0.35
7 AT4G02290 glycosyl hydrolase 9B13 glycosyl hydrolase 9B13, glycosyl
hydrolase 9B13		 0.74 0.3 -0.33
8 AT5G16880 Target of Myb protein 1 -0.74 0.33 -0.32
9 AT3G50240 ATP binding microtubule motor family protein KICP-02 0.72 0.33 -0.34
10 AT1G64740 alpha-1 tubulin alpha-1 tubulin -0.72 0.31 -0.32
11 AT3G22760 Tesmin/TSO1-like CXC domain-containing protein SOL1 0.71 0.31 -0.3
12 AT1G54320 LEM3 (ligand-effect modulator 3) family protein / CDC50
family protein		 -0.71 0.31 -0.33
13 AT1G77810 Galactosyltransferase family protein -0.71 0.31 -0.28
14 AT5G43320 casein kinase I-like 8 casein kinase I-like 8 -0.71 0.31 -0.3
15 AT3G56170 Ca-2+ dependent nuclease Ca-2+ dependent nuclease -0.7 0.32 -0.32
16 AT1G07090 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 6 -0.7 0.32 -0.29
17 AT5G60620 glycerol-3-phosphate acyltransferase 9 glycerol-3-phosphate
acyltransferase 9		 -0.7 0.31 -0.32
18 AT5G42980 thioredoxin 3 thioredoxin H-type 3, thioredoxin
3, ATTRXH3, thioredoxin 3,
THIOREDOXIN H3		 -0.69 0.34 -0.31
19 AT1G05010 ethylene-forming enzyme ethylene forming enzyme, EAT1,
ethylene-forming enzyme		 -0.69 0.31 -0.31
20 AT2G24360 Protein kinase superfamily protein -0.68 0.32 -0.32
21 AT4G11450 Protein of unknown function (DUF3527) 0.67 0.3 -0.32
22 AT1G69960 serine/threonine protein phosphatase 2A serine/threonine protein
phosphatase 2A		 -0.67 0.32 -0.32
23 AT3G04010 O-Glycosyl hydrolases family 17 protein -0.67 0.32 -0.31
24 AT1G25420 Regulator of Vps4 activity in the MVB pathway protein -0.66 0.32 -0.28
25 AT5G52240 membrane steroid binding protein 1 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 5, ATMP1, membrane
steroid binding protein 1		 -0.66 0.33 -0.31
26 AT3G07690 6-phosphogluconate dehydrogenase family protein -0.66 0.3 -0.29
27 AT4G14200 Pentatricopeptide repeat (PPR) superfamily protein 0.66 0.33 -0.32
28 AT4G24550 Clathrin adaptor complexes medium subunit family protein -0.66 0.3 -0.32
29 AT5G64440 fatty acid amide hydrolase fatty acid amide hydrolase, fatty
acid amide hydrolase		 -0.66 0.34 -0.34
30 AT4G34270 TIP41-like family protein -0.66 0.3 -0.32
31 AT1G29060 Target SNARE coiled-coil domain protein -0.66 0.31 -0.3
32 AT2G16740 ubiquitin-conjugating enzyme 29 ubiquitin-conjugating enzyme 29 -0.66 0.33 -0.31
33 AT4G34050 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 caffeoyl coenzyme A
O-methyltransferase 1		 -0.65 0.31 -0.3
34 AT3G52560 ubiquitin E2 variant 1D-4 MMS2 ZWEI HOMOLOGUE 4, UBIQUITIN
E2 VARIANT 1D, ubiquitin E2
variant 1D-4		 -0.65 0.32 -0.33
35 AT1G69230 SPIRAL1-like2 SPIRAL1-like2 0.65 0.32 -0.31
36 AT5G62960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.65 0.3 -0.32
37 AT5G43330 Lactate/malate dehydrogenase family protein cytosolic-NAD-dependent malate
dehydrogenase 2		 -0.65 0.32 -0.3
38 AT5G43940 GroES-like zinc-binding dehydrogenase family protein ALCOHOL DEHYDROGENASE 2, ATGSNOR1,
S-NITROSOGLUTATHIONE REDUCTASE,
sensitive to hot temperatures 5,
PARAQUAT RESISTANT 2		 -0.65 0.3 -0.34
39 AT1G21080 DNAJ heat shock N-terminal domain-containing protein -0.65 0.31 -0.33
40 AT3G12620 Protein phosphatase 2C family protein -0.65 0.3 -0.3
41 AT1G30515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.3 -0.33
42 AT3G08650 ZIP metal ion transporter family -0.64 0.32 -0.33
43 ATMG00110 cytochrome C biogenesis 206 ATP-binding cassette I2,
cytochrome C biogenesis 206		 -0.64 0.31 -0.32
44 AT5G08200 peptidoglycan-binding LysM domain-containing protein -0.64 0.31 -0.31
45 AT3G18280 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.64 0.3 -0.34
46 AT2G29960 cyclophilin 5 ARABIDOPSIS THALIANA CYCLOPHILIN
5, CYCLOPHILIN 19-4, cyclophilin 5		 -0.64 0.31 -0.31
47 AT1G49470 Family of unknown function (DUF716) -0.64 0.33 -0.34
48 AT1G68640 bZIP transcription factor family protein PERIANTHIA 0.64 0.3 -0.31
49 AT3G17020 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.64 0.31 -0.33
50 AT3G57790 Pectin lyase-like superfamily protein -0.63 0.31 -0.32
51 AT5G64400 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST
Arabidopsis thaliana protein match is: Cox19-like CHCH
family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.63 0.33 -0.32
52 AT4G11220 VIRB2-interacting protein 2 VIRB2-interacting protein 2,
Reticulan like protein B2		 -0.63 0.29 -0.31
53 AT2G40890 cytochrome P450, family 98, subfamily A, polypeptide 3 cytochrome P450, family 98,
subfamily A, polypeptide 3		 -0.63 0.31 -0.34
54 AT4G12230 alpha/beta-Hydrolases superfamily protein -0.63 0.32 -0.33
55 AT5G54760 Translation initiation factor SUI1 family protein -0.63 0.32 -0.36
56 AT1G53570 mitogen-activated protein kinase kinase kinase 3 mitogen-activated protein kinase
kinase kinase 3, MAP KINASE KINASE
KINASE 3		 -0.63 0.31 -0.31
57 AT3G28420 Putative membrane lipoprotein 0.63 0.31 -0.35
58 AT1G76060 LYR family of Fe/S cluster biogenesis protein EMBRYO DEFECTIVE 1793 -0.63 0.31 -0.32
59 AT2G16510 ATPase, F0/V0 complex, subunit C protein -0.63 0.32 -0.3
60 AT3G20150 Kinesin motor family protein 0.62 0.32 -0.31
61 AT1G60670 Protein of unknown function (DUF3755) -0.62 0.34 -0.31
62 AT2G18510 RNA-binding (RRM/RBD/RNP motifs) family protein embryo defective 2444 -0.62 0.33 -0.3
63 ATMG00840 hypothetical protein ORF121B -0.62 0.33 -0.31
64 AT2G43840 UDP-glycosyltransferase 74 F1 UDP-glycosyltransferase 74 F1 -0.62 0.28 -0.29
65 AT3G51890 Clathrin light chain protein -0.62 0.31 -0.3
66 AT5G39510 Vesicle transport v-SNARE family protein VESICLE TRANSPORT V-SNARE 11,
ATVTI1A, SHOOT GRAVITROPSIM 4,
VESICLE TRANSPORT V-SNARE 11,
VTI1A, ZIG, ZIG1		 -0.62 0.31 -0.31
67 AT2G22960 alpha/beta-Hydrolases superfamily protein -0.62 0.32 -0.28
68 AT1G55840 Sec14p-like phosphatidylinositol transfer family protein -0.61 0.31 -0.34
69 AT3G47120 RNA recognition motif (RRM)-containing protein -0.61 0.3 -0.31
70 AT2G19930 RNA-dependent RNA polymerase family protein 0.61 0.31 -0.32
71 AT2G44830 Protein kinase superfamily protein 0.61 0.31 -0.32
72 AT3G10860 Cytochrome b-c1 complex, subunit 8 protein -0.61 0.34 -0.33
73 AT3G11690 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast
hits to 84 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.31 -0.32
74 AT1G31310 hydroxyproline-rich glycoprotein family protein 0.61 0.29 -0.31
75 AT3G29200 chorismate mutase 1 ARABIDOPSIS THALIANA CHORISMATE
MUTASE 1, chorismate mutase 1		 -0.61 0.31 -0.3
76 AT5G58020 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF602 (InterPro:IPR006735); Has 385 Blast
hits to 385 proteins in 189 species: Archae - 0; Bacteria -
0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0;
Other Eukaryotes - 65 (source: NCBI BLink).		 -0.61 0.31 -0.3
77 AT3G09570 Lung seven transmembrane receptor family protein -0.61 0.33 -0.29
78 AT1G01650 SIGNAL PEPTIDE PEPTIDASE-LIKE 4 ARABIDOPSIS THALIANA SIGNAL
PEPTIDE PEPTIDASE-LIKE 4, SIGNAL
PEPTIDE PEPTIDASE-LIKE 4		 -0.61 0.3 -0.3
79 AT3G46010 actin depolymerizing factor 1 actin depolymerizing factor 1,
atadf, ATADF1		 -0.61 0.32 -0.31
80 AT5G20320 dicer-like 4 DICER-LIKE 4, dicer-like 4 0.61 0.32 -0.3
81 AT5G02590 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.33 -0.31
82 AT2G36660 poly(A) binding protein 7 poly(A) binding protein 7 0.6 0.32 -0.32
83 AT5G58300 Leucine-rich repeat protein kinase family protein 0.6 0.32 -0.32
84 AT5G47260 ATP binding;GTP binding;nucleotide
binding;nucleoside-triphosphatases		 0.6 0.32 -0.3
85 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.59 0.32 -0.29
86 AT4G28010 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.3 -0.31
87 AT1G61240 Protein of unknown function (DUF707) 0.59 0.33 -0.3
88 AT1G78950 Terpenoid cyclases family protein 0.59 0.32 -0.33
89 AT1G14480 Ankyrin repeat family protein 0.58 0.31 -0.32
90 AT4G11080 HMG (high mobility group) box protein 3xHigh Mobility Group-box1 0.57 0.32 -0.31
91 AT1G29790 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.57 0.33 -0.34
92 AT4G25490 C-repeat/DRE binding factor 1 ATCBF1, C-repeat/DRE binding
factor 1, DRE BINDING PROTEIN 1B		 0.57 0.32 -0.31
93 AT5G02010 RHO guanyl-nucleotide exchange factor 7 ATROPGEF7, RHO guanyl-nucleotide
exchange factor 7		 0.56 0.31 -0.3
94 AT1G72090 Methylthiotransferase 0.56 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
95 C0176 MST_2406.9 - - - 0.7 0.47 -0.45
96 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - 0.69 0.44 -0.46
97 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		-0.67 0.43 -0.44 C0239
98 C0221 Quercetin-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Quercetin-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - quercetin glucoside biosynthesis (Arabidopsis) 0.66 0.46 -0.48