AT3G54770 : -
Query Information
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AGICode AT3G54770
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54770 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.3 -0.32
2 AT1G02900 rapid alkalinization factor 1 RAPID ALKALINIZATION FACTOR 1,
rapid alkalinization factor 1,
RALF-LIKE 1		 0.77 0.32 -0.32
3 AT4G30170 Peroxidase family protein 0.77 0.32 -0.31
4 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.77 0.32 -0.33
5 AT3G50010 Cysteine/Histidine-rich C1 domain family protein 0.76 0.29 -0.31
6 AT2G25980 Mannose-binding lectin superfamily protein 0.76 0.31 -0.31
7 AT5G66280 GDP-D-mannose 4,6-dehydratase 1 GDP-D-mannose 4,6-dehydratase 1 0.76 0.32 -0.3
8 AT4G19030 NOD26-like major intrinsic protein 1 AT-NLM1, NOD26-LIKE MAJOR
INTRINSIC PROTEIN 1, NOD26-LIKE
INTRINSIC PROTEIN 1;1, NOD26-like
major intrinsic protein 1		 0.75 0.33 -0.35
9 AT4G31320 SAUR-like auxin-responsive protein family 0.75 0.32 -0.33
10 AT2G24300 Calmodulin-binding protein 0.74 0.31 -0.34
11 AT1G23410 Ribosomal protein S27a / Ubiquitin family protein 0.74 0.33 -0.31
12 AT5G50920 CLPC homologue 1 ATHSP93-V, CLPC, CLPC homologue 1,
DE-REGULATED CAO ACCUMULATION 1,
HEAT SHOCK PROTEIN 93-V		 -0.74 0.29 -0.34
13 AT1G12000 Phosphofructokinase family protein 0.74 0.31 -0.31
14 AT2G19990 pathogenesis-related protein-1-like pathogenesis-related
protein-1-like		 0.73 0.33 -0.34
15 AT2G21045 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.72 0.31 -0.34
16 AT1G70990 proline-rich family protein 0.72 0.31 -0.32
17 AT1G74500 activation-tagged BRI1(brassinosteroid-insensitive
1)-suppressor 1		 activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, TARGET OF
MONOPTEROS 7		 0.72 0.32 -0.31
18 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.71 0.3 -0.33
19 AT3G62280 GDSL-like Lipase/Acylhydrolase superfamily protein 0.71 0.3 -0.33
20 AT4G35200 Arabidopsis protein of unknown function (DUF241) 0.71 0.32 -0.31
21 AT5G40200 DegP protease 9 DegP protease 9 0.71 0.32 -0.3
22 AT3G13540 myb domain protein 5 myb domain protein 5, myb domain
protein 5		 -0.71 0.3 -0.3
23 AT2G23630 SKU5 similar 16 SKU5 similar 16 0.71 0.32 -0.31
24 AT5G60530 late embryogenesis abundant protein-related / LEA
protein-related		 0.7 0.31 -0.3
25 AT3G15357 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: shoot apex,
hypocotyl, root, leaf; Has 6931 Blast hits to 2036 proteins
in 230 species: Archae - 7; Bacteria - 933; Metazoa - 1824;
Fungi - 836; Plants - 482; Viruses - 218; Other Eukaryotes
- 2631 (source: NCBI BLink).		 0.7 0.3 -0.3
26 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A -0.7 0.32 -0.32
27 AT1G56680 Chitinase family protein 0.7 0.32 -0.31
28 AT5G66690 UDP-Glycosyltransferase superfamily protein UGT72E2 0.7 0.32 -0.3
29 AT2G20515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.7 0.34 -0.32
30 AT2G28670 Disease resistance-responsive (dirigent-like protein)
family protein		 ENHANCED SUBERIN 1 0.7 0.33 -0.34
31 AT5G12410 THUMP domain-containing protein 0.69 0.32 -0.3
32 AT5G13870 xyloglucan endotransglucosylase/hydrolase 5 endoxyloglucan transferase A4,
xyloglucan
endotransglucosylase/hydrolase 5		 0.69 0.32 -0.3
33 AT3G63000 NPL4-like protein 1 NPL4-like protein 1 -0.69 0.32 -0.31
34 AT5G40730 arabinogalactan protein 24 arabinogalactan protein 24,
ARABIDOPSIS THALIANA
ARABINOGALACTAN PROTEIN 24		 0.69 0.31 -0.31
35 AT3G23090 TPX2 (targeting protein for Xklp2) protein family 0.69 0.3 -0.32
36 AT3G18200 nodulin MtN21 /EamA-like transporter family protein 0.69 0.31 -0.33
37 AT5G54020 Cysteine/Histidine-rich C1 domain family protein 0.69 0.31 -0.35
38 AT1G14220 Ribonuclease T2 family protein 0.69 0.29 -0.31
39 AT4G16490 ARM repeat superfamily protein -0.69 0.34 -0.33
40 AT5G10130 Pollen Ole e 1 allergen and extensin family protein 0.68 0.3 -0.3
41 AT2G43880 Pectin lyase-like superfamily protein 0.68 0.32 -0.31
42 AT1G28570 SGNH hydrolase-type esterase superfamily protein -0.68 0.33 -0.31
43 AT3G25790 myb-like transcription factor family protein 0.68 0.33 -0.3
44 AT1G69810 WRKY DNA-binding protein 36 ATWRKY36, WRKY DNA-binding protein
36		 0.68 0.3 -0.33
45 AT5G63660 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
74, PDF2.5		 0.68 0.28 -0.31
46 AT4G34040 RING/U-box superfamily protein -0.68 0.3 -0.3
47 AT5G11540 D-arabinono-1,4-lactone oxidase family protein 0.67 0.31 -0.31
48 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 0.67 0.31 -0.32
49 AT5G04970 Plant invertase/pectin methylesterase inhibitor superfamily 0.67 0.33 -0.31
50 AT4G18130 phytochrome E phytochrome E -0.67 0.32 -0.32
51 AT5G59000 RING/FYVE/PHD zinc finger superfamily protein -0.67 0.33 -0.34
52 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.67 0.31 -0.29
53 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.67 0.34 -0.3
54 AT4G14695 Uncharacterised protein family (UPF0041) 0.67 0.32 -0.3
55 AT4G02090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: root; Has 132
Blast hits to 132 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.32
56 AT2G37130 Peroxidase superfamily protein 0.66 0.34 -0.31
57 AT1G13300 myb-like transcription factor family protein HYPERSENSITIVITY TO LOW
PI-ELICITED PRIMARY ROOT
SHORTENING 1		 0.66 0.32 -0.3
58 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 0.66 0.32 -0.31
59 ATCG00530 CemA-like proton extrusion protein-related YCF10 -0.66 0.32 -0.35
60 AT2G23060 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.66 0.34 -0.29
61 AT4G03610 Metallo-hydrolase/oxidoreductase superfamily protein 0.66 0.3 -0.31
62 AT4G37160 SKU5 similar 15 SKU5 similar 15 0.66 0.3 -0.32
63 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.66 0.32 -0.32
64 AT4G34680 GATA transcription factor 3 GATA transcription factor 3 -0.66 0.3 -0.32
65 AT2G32600 hydroxyproline-rich glycoprotein family protein 0.66 0.3 -0.31
66 AT2G41660 Protein of unknown function, DUF617 mizu-kussei 1 0.66 0.33 -0.34
67 AT5G26570 catalytics;carbohydrate kinases;phosphoglucan, water
dikinases		 ATGWD3, OK1, PHOSPHOGLUCAN WATER
DIKINASE		 -0.66 0.31 -0.33
68 AT5G66320 GATA transcription factor 5 GATA transcription factor 5 -0.66 0.32 -0.31
69 AT4G18340 Glycosyl hydrolase superfamily protein 0.66 0.33 -0.33
70 AT4G04750 Major facilitator superfamily protein -0.65 0.32 -0.31
71 AT2G16780 Transducin family protein / WD-40 repeat family protein MSI02, MULTICOPY SUPPRESSOR OF
IRA1 2, NFC02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 2		 0.65 0.32 -0.29
72 AT3G15540 indole-3-acetic acid inducible 19 indole-3-acetic acid inducible 19,
MASSUGU 2		 0.65 0.33 -0.31
73 AT2G33790 arabinogalactan protein 30 arabinogalactan protein 30,
ATAGP30		 0.65 0.32 -0.29
74 AT4G27840 SNARE-like superfamily protein -0.65 0.32 -0.31
75 AT5G56540 arabinogalactan protein 14 arabinogalactan protein 14,
ATAGP14		 0.65 0.33 -0.32
76 AT1G80460 Actin-like ATPase superfamily protein GLI1, nonhost resistance to P. s.
phaseolicola 1		 0.65 0.31 -0.33
77 AT4G38020 tRNA/rRNA methyltransferase (SpoU) family protein -0.65 0.31 -0.31
78 AT3G05890 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2B 0.64 0.32 -0.31
79 AT5G04770 cationic amino acid transporter 6 ARABIDOPSIS THALIANA CATIONIC
AMINO ACID TRANSPORTER 6, cationic
amino acid transporter 6		 0.64 0.27 -0.33
80 AT1G74030 enolase 1 enolase 1 0.64 0.31 -0.33
81 AT4G26950 Protein of unknown function, DUF584 -0.64 0.32 -0.31
82 AT4G02810 Protein of unknown function (DUF3049) FANTASTIC FOUR 1 0.64 0.28 -0.32
83 AT3G46440 UDP-XYL synthase 5 UDP-XYL synthase 5 0.64 0.32 -0.31
84 AT1G52070 Mannose-binding lectin superfamily protein 0.63 0.32 -0.31
85 AT3G44510 alpha/beta-Hydrolases superfamily protein 0.63 0.31 -0.32
86 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.63 0.34 -0.33
87 AT1G05030 Major facilitator superfamily protein -0.63 0.32 -0.31
88 AT3G45090 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.31 -0.3
89 AT5G52410 CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23890.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.63 0.34 -0.3
90 AT1G26130 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.63 0.3 -0.31
91 AT1G08320 bZIP transcription factor family protein bZIP21, TGACG (TGA) motif-binding
protein 9		 0.63 0.34 -0.33
92 AT4G17460 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein HAT1 0.63 0.31 -0.31
93 ATCG01100 NADH dehydrogenase family protein NDHA -0.62 0.31 -0.33
94 AT1G73160 UDP-Glycosyltransferase superfamily protein 0.62 0.34 -0.31
95 AT4G04165 transposable element gene -0.62 0.32 -0.32
96 ATCG01050 NADH-Ubiquinone/plastoquinone (complex I) protein NDHD -0.62 0.32 -0.33
97 ATCG00770 ribosomal protein S8 ribosomal protein S8 -0.62 0.31 -0.31
98 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.31 -0.32
99 AT5G13050 5-formyltetrahydrofolate cycloligase 5-formyltetrahydrofolate
cycloligase		 -0.62 0.32 -0.31
100 ATCG00760 ribosomal protein L36 ribosomal protein L36 -0.62 0.32 -0.31
101 AT3G28910 myb domain protein 30 ATMYB30, myb domain protein 30 0.62 0.32 -0.33
102 AT1G02020 nitroreductase family protein -0.61 0.32 -0.33
103 AT3G05350 Metallopeptidase M24 family protein -0.61 0.34 -0.31
104 AT5G27630 acyl-CoA binding protein 5 acyl-CoA binding protein 5 -0.61 0.32 -0.33
105 AT5G43340 phosphate transporter 1;6 phosphate transporter 1;6,
PHOSPHATE TRANSPORTER 6		 -0.6 0.3 -0.32
106 AT4G33210 F-box family protein SLOW MOTION -0.6 0.31 -0.31
107 AT1G59520 CW7 CW7 -0.6 0.29 -0.32
108 AT5G01780 2-oxoglutarate-dependent dioxygenase family protein -0.6 0.3 -0.31
109 AT5G22760 PHD finger family protein -0.6 0.33 -0.32
110 AT3G05650 receptor like protein 32 receptor like protein 32, receptor
like protein 32		 -0.59 0.33 -0.33
111 AT2G27490 dephospho-CoA kinase family ATCOAE -0.59 0.31 -0.27
112 AT5G15450 casein lytic proteinase B3 ALBINO AND PALE GREEN 6, AtCLPB3,
CASEIN LYTIC PROTEINASE B-P,
casein lytic proteinase B3		 -0.59 0.31 -0.32
113 ATCG00340 Photosystem I, PsaA/PsaB protein PSAB -0.59 0.32 -0.31
114 ATCG00740 RNA polymerase subunit alpha RNA polymerase subunit alpha -0.58 0.35 -0.31
115 AT4G09560 Protease-associated (PA) RING/U-box zinc finger family
protein		 -0.58 0.34 -0.31
116 AT5G18190 Protein kinase family protein -0.58 0.3 -0.3
117 ATCG00750 ribosomal protein S11 ribosomal protein S11 -0.58 0.31 -0.31
118 AT1G73990 signal peptide peptidase signal peptide peptidase, SPPA1 -0.58 0.29 -0.31
119 AT1G32360 Zinc finger (CCCH-type) family protein -0.58 0.32 -0.31
120 AT5G24970 Protein kinase superfamily protein -0.58 0.3 -0.32
121 AT5G01810 CBL-interacting protein kinase 15 PROTEIN KINASE 10, CBL-interacting
protein kinase 15, PKS3,
SOS3-INTERACTING PROTEIN 2,
SNF1-RELATED PROTEIN KINASE 3.1		 -0.58 0.33 -0.3
122 AT4G39560 Galactose oxidase/kelch repeat superfamily protein -0.57 0.33 -0.31
123 AT5G23150 Tudor/PWWP/MBT domain-containing protein ENHANCER OF AG-4 2 -0.57 0.34 -0.31
124 AT3G25855 Copper transport protein family -0.57 0.3 -0.32
125 AT5G18550 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.57 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
126 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		0.79 0.47 -0.47 C0227
127 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		0.64 0.44 -0.49 C0239