AT3G54490 : RNA polymerase II fifth largest subunit, E
Query Information
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AGICode AT3G54490
Description RNA polymerase II fifth largest subunit, E
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54490 RNA polymerase II fifth largest subunit, E RNA polymerase II fifth largest
subunit, E		 1 0.33 -0.33
2 AT3G46770 AP2/B3-like transcriptional factor family protein 0.8 0.3 -0.31
3 AT5G27190 transposable element gene 0.77 0.3 -0.32
4 AT1G48095 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G36960.1); Has 82 Blast hits
to 82 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.32 -0.3
5 AT5G39560 Galactose oxidase/kelch repeat superfamily protein 0.75 0.31 -0.3
6 AT3G24280 small acidic protein 2 small acidic protein 2 0.75 0.29 -0.32
7 AT1G38340 transposable element gene 0.74 0.31 -0.31
8 AT3G46860 Serine protease inhibitor, potato inhibitor I-type family
protein		 0.74 0.3 -0.33
9 AT2G24320 alpha/beta-Hydrolases superfamily protein 0.74 0.3 -0.31
10 AT3G53940 Mitochondrial substrate carrier family protein 0.73 0.33 -0.3
11 AT2G42410 zinc finger protein 11 ZINC FINGER PROTEIN 11, zinc
finger protein 11		 0.73 0.31 -0.3
12 AT4G19620 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.73 0.31 -0.3
13 AT5G34800 transposable element gene 0.73 0.3 -0.31
14 AT5G28620 protein kinase C-related -0.72 0.33 -0.31
15 AT3G15050 IQ-domain 10 IQ-domain 10 0.72 0.32 -0.32
16 AT5G39310 expansin A24 ATEXP24, expansin A24, ATHEXP
ALPHA 1.19, EXPANSIN 24, expansin
A24		 -0.71 0.31 -0.34
17 AT2G32360 Ubiquitin-like superfamily protein 0.71 0.33 -0.31
18 AT4G03860 transposable element gene -0.71 0.32 -0.3
19 AT3G25050 xyloglucan endotransglucosylase/hydrolase 3 xyloglucan
endotransglucosylase/hydrolase 3		 0.7 0.3 -0.33
20 AT3G26150 cytochrome P450, family 71, subfamily B, polypeptide 16 cytochrome P450, family 71,
subfamily B, polypeptide 16		 0.7 0.32 -0.33
21 AT2G46800 zinc transporter of Arabidopsis thaliana A. THALIANA CATION DIFFUSION
FACILITATOR 1, ATMTP1, MTP1, zinc
transporter of Arabidopsis
thaliana, ZINC TRANSPORTER OF
ARABIDOPSIS THALIANA 1		 -0.7 0.31 -0.3
22 ATMG00320 hypothetical protein ORF127 -0.7 0.3 -0.32
23 AT5G07700 myb domain protein 76 myb domain protein 76, myb domain
protein 76		 0.7 0.32 -0.31
24 AT3G28960 Transmembrane amino acid transporter family protein 0.69 0.32 -0.32
25 AT3G27930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; Has 35
Blast hits to 35 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.32 -0.32
26 AT2G23640 Reticulan like protein B13 Reticulan like protein B13 -0.69 0.31 -0.31
27 AT2G23400 Undecaprenyl pyrophosphate synthetase family protein 0.68 0.32 -0.29
28 AT4G15200 formin 3 formin 3, formin 3 0.68 0.31 -0.33
29 AT2G06150 transposable element gene 0.68 0.33 -0.32
30 AT2G40440 BTB/POZ domain-containing protein 0.68 0.33 -0.32
31 AT4G27550 trehalose-6-phosphatase synthase S4 ARABIDOPSIS THALIANA TREHALOSE
PHOSPHATASE/SYNTHASE 4,
trehalose-6-phosphatase synthase
S4		 0.68 0.3 -0.31
32 AT5G43610 sucrose-proton symporter 6 sucrose-proton symporter 6,
sucrose-proton symporter 6		 0.68 0.3 -0.31
33 AT1G04560 AWPM-19-like family protein -0.68 0.31 -0.31
34 AT5G48290 Heavy metal transport/detoxification superfamily protein 0.68 0.33 -0.33
35 AT3G47510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15
proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.67 0.31 -0.29
36 AT1G50910 unknown protein; Has 1105 Blast hits to 802 proteins in 217
species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi -
210; Plants - 58; Viruses - 6; Other Eukaryotes - 207
(source: NCBI BLink).		 0.67 0.3 -0.3
37 AT2G30780 Tetratricopeptide repeat (TPR)-like superfamily protein 0.67 0.32 -0.29
38 AT4G37950 Rhamnogalacturonate lyase family protein 0.67 0.29 -0.34
39 AT1G31530 DNAse I-like superfamily protein 0.67 0.3 -0.32
40 AT1G23070 Protein of unknown function (DUF300) -0.67 0.32 -0.32
41 AT3G30510 transposable element gene -0.67 0.3 -0.31
42 AT1G48670 auxin-responsive GH3 family protein 0.67 0.31 -0.3
43 AT3G23330 Tetratricopeptide repeat (TPR)-like superfamily protein 0.67 0.31 -0.33
44 AT4G35370 Transducin/WD40 repeat-like superfamily protein 0.67 0.33 -0.33
45 AT1G17250 receptor like protein 3 receptor like protein 3, receptor
like protein 3		 0.67 0.33 -0.31
46 AT1G42420 transposable element gene -0.67 0.34 -0.31
47 AT5G29100 transposable element gene 0.66 0.32 -0.31
48 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 0.66 0.32 -0.31
49 AT2G16010 transposable element gene -0.66 0.34 -0.31
50 AT3G11870 Endoribonuclease/protein kinase IRE1-like 0.66 0.33 -0.3
51 AT2G06230 transposable element gene 0.66 0.31 -0.33
52 AT5G20690 Leucine-rich repeat protein kinase family protein 0.66 0.3 -0.32
53 AT1G70460 root hair specific 10 proline-rich extensin-like
receptor kinase 13, proline-rich
extensin-like receptor kinase 13,
root hair specific 10		 -0.66 0.31 -0.32
54 AT1G64820 MATE efflux family protein -0.66 0.33 -0.31
55 AT2G24255 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT1G64840.1); Has 124 Blast hits to
121 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.32 -0.33
56 AT1G04880 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 0.66 0.3 -0.32
57 AT1G37537 transposable element gene 0.66 0.33 -0.31
58 AT2G21780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G39360.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.32 -0.33
59 AT1G49370 pseudogene, similar to OSJNBa0072F16.8, blastp match of 42%
identity and 6.6e-73 P-value to
GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza
sativa (japonica cultivar-group)}		 0.65 0.28 -0.32
60 AT3G11380 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.34 -0.3
61 AT4G20200 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.65 0.32 -0.32
62 AT1G68460 isopentenyltransferase 1 Arabidopsis thaliana
isopentenyltransferase 1,
isopentenyltransferase 1		 0.65 0.31 -0.31
63 AT5G44850 Protein with RNI-like/FBD-like domains 0.65 0.3 -0.33
64 AT4G35590 RWP-RK domain-containing protein RWP-RK domain-containing 5 0.65 0.32 -0.3
65 AT3G50980 dehydrin xero 1 dehydrin xero 1 -0.65 0.34 -0.31
66 AT3G47440 tonoplast intrinsic protein 5;1 tonoplast intrinsic protein 5;1 -0.65 0.33 -0.31
67 AT1G79640 Protein kinase superfamily protein 0.65 0.33 -0.33
68 AT1G64410 transposable element gene 0.64 0.3 -0.31
69 AT2G26630 transposable element gene 0.64 0.31 -0.29
70 AT1G39750 transposable element gene -0.64 0.32 -0.3
71 AT2G14020 transposable element gene 0.64 0.31 -0.31
72 AT2G16200 structural molecules 0.64 0.31 -0.33
73 AT4G37840 hexokinase-like 3 hexokinase-like 3 0.64 0.33 -0.3
74 AT5G39420 CDC2C CDC2C -0.64 0.3 -0.31
75 AT2G42250 cytochrome P450, family 712, subfamily A, polypeptide 1 cytochrome P450, family 712,
subfamily A, polypeptide 1		 0.64 0.32 -0.3
76 AT4G19850 lectin-related ARABIDOPSIS THALIANA PHLOEM
PROTEIN 2-A2, phloem protein 2-A2,
PP2A2		 -0.64 0.32 -0.32
77 AT4G04420 transposable element gene 0.64 0.3 -0.32
78 AT3G42320 transposable element gene 0.64 0.32 -0.32
79 AT1G51270 structural molecules;transmembrane receptors;structural
molecules		 0.63 0.31 -0.33
80 AT2G06020 Homeodomain-like superfamily protein -0.63 0.34 -0.33
81 AT1G30850 root hair specific 4 root hair specific 4 -0.63 0.33 -0.32
82 AT5G46140 Protein of unknown function (DUF295) 0.63 0.32 -0.3
83 AT5G57690 diacylglycerol kinase 4 ATDGK4, diacylglycerol kinase 4 0.63 0.29 -0.3
84 AT3G49270 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
4 anthesis, C globular stage, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 63
Blast hits to 43 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 28; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.63 0.32 -0.31
85 AT5G51930 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 0.63 0.3 -0.32
86 AT1G42570 pseudogene, similar to P0529E05.9, blastp match of 56%
identity and 1.2e-110 P-value to
GP|18461196|dbj|BAB84393.1||AP003279 P0529E05.9 {Oryza
sativa (japonica cultivar-group)}		 0.63 0.32 -0.32
87 AT2G04420 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.63 0.32 -0.31
88 AT1G07025 Mitochondrial substrate carrier family protein 0.62 0.32 -0.32
89 AT5G35420 transposable element gene 0.62 0.34 -0.33
90 AT5G36990 transposable element gene 0.62 0.29 -0.33
91 AT1G52820 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.62 0.33 -0.31
92 AT1G50080 BEST Arabidopsis thaliana protein match is: RNA-directed
DNA polymerase (reverse transcriptase)-related family
protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.62 0.33 -0.35
93 AT4G19910 Toll-Interleukin-Resistance (TIR) domain family protein 0.62 0.35 -0.33
94 AT1G66120 AMP-dependent synthetase and ligase family protein 0.62 0.33 -0.31
95 AT1G71450 Integrase-type DNA-binding superfamily protein 0.62 0.31 -0.31
96 AT1G10730 Clathrin adaptor complexes medium subunit family protein -0.62 0.3 -0.31
97 AT3G53360 Tetratricopeptide repeat (TPR)-like superfamily protein 0.62 0.33 -0.28
98 AT4G20080 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 -0.62 0.33 -0.32
99 AT5G18160 F-box and associated interaction domains-containing protein -0.62 0.3 -0.3
100 AT1G34410 auxin response factor 21 auxin response factor 21 -0.62 0.33 -0.31
101 AT1G12220 Disease resistance protein (CC-NBS-LRR class) family RESISTANT TO P. SYRINGAE 5 0.62 0.32 -0.3
102 AT3G15930 Pentatricopeptide repeat (PPR) superfamily protein 0.62 0.32 -0.31
103 AT2G15325 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.3 -0.3
104 AT2G20150 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.28 -0.33
105 AT4G12380 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.34 -0.32
106 AT5G09360 laccase 14 laccase 14 0.61 0.33 -0.33
107 AT1G16940 F-box/RNI-like/FBD-like domains-containing protein 0.61 0.32 -0.31
108 AT4G23110 insulin-like growth factor binding 0.61 0.33 -0.31
109 AT1G50990 Protein kinase protein with tetratricopeptide repeat domain 0.61 0.29 -0.32
110 AT5G29070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion; BEST
Arabidopsis thaliana protein match is: zinc ion
binding;nucleic acid binding (TAIR:AT4G06479.1); Has 5
Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.32
111 AT1G04670 unknown protein; Has 40 Blast hits to 40 proteins in 14
species: Archae - 2; Bacteria - 5; Metazoa - 1; Fungi - 2;
Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.33 -0.33
112 AT1G39430 transposable element gene 0.61 0.32 -0.32
113 AT1G76420 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 31, CUP SHAPED COTYLEDON3,
NAC368		 0.61 0.3 -0.32
114 AT5G35640 Putative endonuclease or glycosyl hydrolase 0.61 0.32 -0.31
115 AT2G45230 transposable element gene 0.61 0.32 -0.33
116 AT4G25270 Tetratricopeptide repeat (TPR)-like superfamily protein organelle transcript processing 70 0.61 0.33 -0.3
117 AT3G42860 zinc knuckle (CCHC-type) family protein -0.61 0.31 -0.33
118 AT2G26420 1-phosphatidylinositol-4-phosphate 5-kinase 3 1-phosphatidylinositol-4-phosphate
5-kinase 3		 -0.61 0.31 -0.3
119 AT5G08139 RING/U-box superfamily protein -0.61 0.31 -0.33
120 AT1G26610 C2H2-like zinc finger protein 0.61 0.31 -0.3
121 AT2G31860 pseudogene, poly (ADP-ribose) glycohydrolase, putative,
contains Pfam domain, PF05028: poly (ADP-ribose)
glycohydrolase (PARG); blastp match of 59% identity and
1.4e-19 P-value to EGAD|134505|143482 114E2.c protein
{Drosophila melanogaster}		 0.61 0.33 -0.32
122 AT2G10920 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.61 0.3 -0.33
123 AT5G17480 pollen calcium-binding protein 1 pollen calcium-binding protein 1,
pollen calcium-binding protein 1		 -0.6 0.31 -0.31
124 AT5G07270 XB3 ortholog 3 in Arabidopsis thaliana XB3 ortholog 3 in Arabidopsis
thaliana		 -0.6 0.32 -0.34
125 AT1G75400 RING/U-box superfamily protein -0.6 0.32 -0.32
126 AT5G36090 transposable element gene -0.6 0.31 -0.31
127 AT3G20900 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.33 -0.31
128 AT3G61350 SKP1 interacting partner 4 SKP1 interacting partner 4 -0.6 0.32 -0.32
129 AT1G65220 ARM repeat superfamily protein -0.6 0.29 -0.32
130 AT2G04038 basic leucine-zipper 48 basic leucine-zipper 48, basic
leucine-zipper 48		 -0.6 0.32 -0.32
131 AT1G20750 RAD3-like DNA-binding helicase protein -0.6 0.32 -0.32
132 AT1G05610 ADP-glucose pyrophosphorylase small subunit 2 ADP-glucose pyrophosphorylase
small subunit 2		 -0.6 0.32 -0.3
133 AT4G03840 transposable element gene -0.59 0.34 -0.32
134 AT1G47340 F-box and associated interaction domains-containing protein -0.59 0.33 -0.33
135 AT4G30540 Class I glutamine amidotransferase-like superfamily protein -0.59 0.31 -0.33
136 AT4G12410 SAUR-like auxin-responsive protein family -0.59 0.32 -0.32
137 AT5G47260 ATP binding;GTP binding;nucleotide
binding;nucleoside-triphosphatases		 -0.59 0.32 -0.31
138 AT1G19530 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation, anaerobic
respiration; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl,
root, flower; EXPRESSED DURING: petal differentiation and
expansion stage; Has 47 Blast hits to 47 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.31 -0.32
139 AT1G49850 RING/U-box superfamily protein -0.59 0.32 -0.32
140 AT1G24060 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.3 -0.29
141 AT1G62700 Arabidopsis NAC domain containing protein 26 Arabidopsis NAC domain containing
protein 26, VASCULAR RELATED
NAC-DOMAIN PROTEIN 5		 -0.58 0.31 -0.31
142 AT1G79660 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.57 0.32 -0.31
143 AT3G26790 AP2/B3-like transcriptional factor family protein FUSCA 3 -0.57 0.3 -0.32
144 AT3G22640 cupin family protein PAP85 -0.57 0.34 -0.31
145 AT4G28720 Flavin-binding monooxygenase family protein YUCCA 8 -0.57 0.32 -0.31
146 AT3G04900 Heavy metal transport/detoxification superfamily protein -0.57 0.32 -0.32
147 AT5G35550 Duplicated homeodomain-like superfamily protein MYB DOMAIN PROTEIN 123, ATTT2, MYB
DOMAIN PROTEIN 123, TRANSPARENT
TESTA 2		 -0.57 0.32 -0.32