AT3G54210 : -
Query Information
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AGICode AT3G54210
Description Ribosomal protein L17 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54210 Ribosomal protein L17 family protein 1 0.31 -0.33
2 AT2G33450 Ribosomal L28 family 0.97 0.32 -0.31
3 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.97 0.3 -0.31
4 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.97 0.31 -0.32
5 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.96 0.33 -0.32
6 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.96 0.29 -0.3
7 AT5G65220 Ribosomal L29 family protein 0.96 0.32 -0.31
8 AT3G13120 Ribosomal protein S10p/S20e family protein 0.96 0.34 -0.3
9 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.96 0.31 -0.32
10 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.95 0.31 -0.32
11 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.95 0.33 -0.34
12 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.95 0.32 -0.35
13 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.95 0.31 -0.3
14 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.95 0.32 -0.32
15 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.95 0.31 -0.31
16 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.95 0.33 -0.31
17 AT3G12930 Lojap-related protein 0.95 0.32 -0.31
18 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.95 0.33 -0.32
19 AT2G43030 Ribosomal protein L3 family protein 0.95 0.33 -0.34
20 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.95 0.29 -0.33
21 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.95 0.29 -0.33
22 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.94 0.34 -0.32
23 AT3G28460 methyltransferases 0.94 0.31 -0.3
24 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.94 0.34 -0.31
25 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.94 0.31 -0.32
26 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.94 0.3 -0.31
27 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.94 0.32 -0.33
28 AT5G52970 thylakoid lumen 15.0 kDa protein 0.94 0.3 -0.31
29 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.93 0.31 -0.31
30 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.93 0.31 -0.3
31 AT1G14270 CAAX amino terminal protease family protein 0.93 0.33 -0.31
32 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.93 0.31 -0.3
33 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.93 0.33 -0.32
34 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.93 0.33 -0.31
35 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.92 0.33 -0.31
36 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.92 0.31 -0.33
37 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.33 -0.33
38 AT5G47190 Ribosomal protein L19 family protein 0.92 0.34 -0.32
39 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.31 -0.34
40 AT3G20230 Ribosomal L18p/L5e family protein 0.92 0.33 -0.3
41 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.92 0.33 -0.29
42 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.92 0.32 -0.3
43 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.92 0.32 -0.3
44 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.29 -0.31
45 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.32 -0.31
46 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.92 0.33 -0.31
47 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.92 0.29 -0.31
48 AT4G17560 Ribosomal protein L19 family protein 0.91 0.34 -0.3
49 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.91 0.34 -0.32
50 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.91 0.3 -0.31
51 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.91 0.33 -0.29
52 AT4G26370 antitermination NusB domain-containing protein 0.91 0.33 -0.33
53 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.91 0.31 -0.32
54 AT4G09650 ATP synthase delta-subunit gene ATP synthase delta-subunit gene,
PIGMENT DEFECTIVE 332		 0.91 0.31 -0.32
55 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.33 -0.34
56 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.91 0.31 -0.3
57 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.91 0.33 -0.32
58 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.91 0.33 -0.32
59 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.32 -0.32
60 AT4G37510 Ribonuclease III family protein 0.91 0.32 -0.33
61 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.31 -0.3
62 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.91 0.34 -0.3
63 AT3G23700 Nucleic acid-binding proteins superfamily 0.91 0.32 -0.33
64 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.91 0.32 -0.33
65 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.3 -0.3
66 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5		 0.9 0.33 -0.31
67 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.9 0.33 -0.32
68 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.9 0.31 -0.32
69 AT4G34290 SWIB/MDM2 domain superfamily protein 0.9 0.32 -0.34
70 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.9 0.32 -0.31
71 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.9 0.33 -0.33
72 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.33 -0.33
73 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.9 0.32 -0.29
74 AT5G07020 proline-rich family protein 0.9 0.29 -0.32
75 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.9 0.29 -0.32
76 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.9 0.31 -0.29
77 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.9 0.3 -0.33
78 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.9 0.32 -0.33
79 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.9 0.29 -0.31
80 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.9 0.31 -0.31
81 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.9 0.3 -0.33
82 AT2G24090 Ribosomal protein L35 0.9 0.32 -0.31
83 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.33 -0.32
84 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.9 0.33 -0.32
85 AT4G15510 Photosystem II reaction center PsbP family protein 0.9 0.32 -0.31
86 AT5G54600 Translation protein SH3-like family protein 0.9 0.32 -0.3
87 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.9 0.3 -0.33
88 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.9 0.32 -0.32
89 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.9 0.32 -0.29
90 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.31 -0.33
91 AT1G06190 Rho termination factor 0.89 0.33 -0.33
92 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.3 -0.31
93 AT4G34730 ribosome-binding factor A family protein 0.89 0.32 -0.32
94 AT3G29185 Domain of unknown function (DUF3598) 0.89 0.31 -0.34
95 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.89 0.32 -0.32
96 AT4G01310 Ribosomal L5P family protein 0.89 0.31 -0.31
97 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.89 0.3 -0.33
98 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.3 -0.31
99 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.32 -0.3
100 AT4G27600 pfkB-like carbohydrate kinase family protein GENES NECESSARY FOR THE
ACHIEVEMENT OF RUBISCO
ACCUMULATION 5		 0.89 0.33 -0.31
101 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.89 0.32 -0.3
102 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.89 0.32 -0.31
103 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.89 0.31 -0.33
104 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.89 0.32 -0.3
105 AT5G55220 trigger factor type chaperone family protein 0.89 0.31 -0.3
106 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.89 0.32 -0.31
107 AT1G29070 Ribosomal protein L34 0.89 0.34 -0.3
108 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.89 0.33 -0.32
109 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.33 -0.3
110 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.89 0.3 -0.34
111 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.89 0.34 -0.32
112 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.3 -0.31
113 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.89 0.31 -0.3
114 AT4G18360 Aldolase-type TIM barrel family protein -0.84 0.32 -0.29
115 AT3G25290 Auxin-responsive family protein -0.84 0.31 -0.32
116 AT2G36380 pleiotropic drug resistance 6 ATP-binding cassette G34,
PLEIOTROPIC DRUG RESISTANCE 6,
pleiotropic drug resistance 6		 -0.81 0.32 -0.32
117 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.79 0.33 -0.31
118 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.77 0.33 -0.32
119 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.77 0.31 -0.33
120 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.77 0.31 -0.31
121 AT1G20490 AMP-dependent synthetase and ligase family protein -0.76 0.32 -0.31
122 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.76 0.31 -0.33
123 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.76 0.33 -0.3
124 AT5G49880 mitotic checkpoint family protein -0.76 0.3 -0.31
125 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.76 0.32 -0.32
126 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.75 0.31 -0.33
127 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.75 0.32 -0.31
128 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.3 -0.3
129 AT4G15610 Uncharacterised protein family (UPF0497) -0.75 0.31 -0.32
130 AT5G18780 F-box/RNI-like superfamily protein -0.75 0.32 -0.32
131 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.74 0.28 -0.32
132 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.74 0.3 -0.33
133 AT5G15730 Protein kinase superfamily protein AtCRLK2,
calcium/calmodulin-regulated
receptor-like kinase 2		 -0.73 0.32 -0.3
134 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.73 0.3 -0.31
135 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.73 0.32 -0.32
136 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.73 0.3 -0.31
137 AT5G61450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.73 0.32 -0.31
138 AT4G29900 autoinhibited Ca(2+)-ATPase 10 autoinhibited Ca(2+)-ATPase 10,
ATACA10, COMPACT INFLORESCENCE 1		 -0.72 0.33 -0.34
139 AT2G17520 Endoribonuclease/protein kinase IRE1-like ARABIDOPSIS THALIANA INOSITOL
REQUIRING 1-2, INOSITOL REQUIRING
1-2, IRE1A		 -0.72 0.32 -0.29
140 AT3G25250 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 AGC2, AGC2-1, AtOXI1, oxidative
signal-inducible1		 -0.72 0.31 -0.3
141 AT2G35980 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 ARABIDOPSIS NDR1/HIN1-LIKE 10,
NDR1/HIN1-LIKE,
YELLOW-LEAF-SPECIFIC GENE 9		 -0.71 0.33 -0.3
142 AT4G11670 Protein of unknown function (DUF810) -0.71 0.3 -0.33
143 AT1G10050 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.71 0.3 -0.3
144 AT4G23700 cation/H+ exchanger 17 cation/H+ exchanger 17, cation/H+
exchanger 17		 -0.7 0.33 -0.31
145 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.7 0.32 -0.31
146 AT2G46150 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.7 0.33 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
147 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.81 0.44 -0.46 C0051