AT3G54390 : -
Query Information
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AGICode AT3G54390
Description sequence-specific DNA binding transcription factors
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54390 sequence-specific DNA binding transcription factors 1 0.3 -0.32
2 AT2G41870 Remorin family protein 0.78 0.31 -0.33
3 AT5G57450 homolog of X-ray repair cross complementing 3 (XRCC3) ARABIDOPSIS THALIANA HOMOLOG OF
X-RAY REPAIR CROSS COMPLEMENTING 3
(XRCC3), homolog of X-ray repair
cross complementing 3 (XRCC3)		 -0.77 0.34 -0.3
4 AT2G27775 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.77 0.28 -0.29
5 AT5G12840 nuclear factor Y, subunit A1 ATHAP2A, EMBRYO DEFECTIVE 2220,
HAP2A, nuclear factor Y, subunit
A1		 0.75 0.3 -0.32
6 AT1G72750 translocase inner membrane subunit 23-2 translocase inner membrane subunit
23-2, translocase inner membrane
subunit 23-2		 -0.74 0.29 -0.32
7 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 -0.74 0.33 -0.31
8 AT1G23280 MAK16 protein-related -0.74 0.31 -0.33
9 AT1G79520 Cation efflux family protein 0.73 0.32 -0.31
10 AT1G06560 NOL1/NOP2/sun family protein -0.73 0.31 -0.32
11 AT1G79420 Protein of unknown function (DUF620) 0.73 0.31 -0.31
12 AT3G14120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Nuclear pore protein 84/107
(InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins
in 612 species: Archae - 19; Bacteria - 730; Metazoa -
2186; Fungi - 823; Plants - 382; Viruses - 37; Other
Eukaryotes - 1222 (source: NCBI BLink).		 -0.73 0.32 -0.31
13 AT3G05640 Protein phosphatase 2C family protein 0.73 0.29 -0.33
14 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.73 0.32 -0.31
15 AT2G18220 Noc2p family -0.73 0.34 -0.32
16 AT3G11830 TCP-1/cpn60 chaperonin family protein -0.73 0.33 -0.34
17 AT5G57490 voltage dependent anion channel 4 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 4, voltage
dependent anion channel 4		 -0.72 0.32 -0.31
18 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 -0.72 0.31 -0.28
19 AT1G14060 GCK domain-containing protein -0.71 0.3 -0.34
20 AT4G26600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.32 -0.31
21 AT1G61770 Chaperone DnaJ-domain superfamily protein -0.71 0.33 -0.29
22 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 -0.71 0.32 -0.32
23 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE -0.71 0.31 -0.31
24 AT1G52160 tRNAse Z3 tRNAse Z3 -0.71 0.32 -0.32
25 AT3G06330 RING/U-box superfamily protein 0.7 0.33 -0.32
26 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 0.7 0.31 -0.3
27 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c 0.7 0.32 -0.31
28 AT1G28510 Optic atrophy 3 protein (OPA3) -0.7 0.3 -0.31
29 AT3G09880 Protein phosphatase 2A regulatory B subunit family protein ATB' BETA -0.7 0.3 -0.3
30 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 -0.69 0.33 -0.31
31 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 0.69 0.31 -0.34
32 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases -0.69 0.32 -0.32
33 AT1G73390 Endosomal targeting BRO1-like domain-containing protein 0.69 0.33 -0.32
34 AT5G09380 RNA polymerase III RPC4 -0.69 0.31 -0.31
35 AT4G17030 expansin-like B1 AT-EXPR, expansin-like B1,
ATEXPR1, ATHEXP BETA 3.1,
expansin-like B1, EXPR		 0.69 0.31 -0.31
36 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.69 0.3 -0.33
37 AT4G23540 ARM repeat superfamily protein -0.69 0.3 -0.31
38 AT3G22480 prefoldin 2 prefoldin 2 -0.69 0.32 -0.3
39 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 0.68 0.3 -0.29
40 AT3G49100 Signal recognition particle, SRP9/SRP14 subunit -0.68 0.31 -0.31
41 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 -0.68 0.3 -0.32
42 AT3G23940 dehydratase family -0.68 0.3 -0.32
43 AT1G19450 Major facilitator superfamily protein -0.68 0.32 -0.33
44 AT3G10200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.68 0.32 -0.29
45 AT2G18330 AAA-type ATPase family protein -0.68 0.3 -0.31
46 AT4G19860 alpha/beta-Hydrolases superfamily protein 0.68 0.33 -0.32
47 AT2G33210 heat shock protein 60-2 heat shock protein 60-2 -0.68 0.31 -0.31
48 AT3G01160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323
proteins in 1057 species: Archae - 109; Bacteria - 2369;
Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses -
489; Other Eukaryotes - 13360 (source: NCBI BLink).		 -0.68 0.33 -0.31
49 AT2G40360 Transducin/WD40 repeat-like superfamily protein -0.68 0.31 -0.33
50 AT2G19385 zinc ion binding -0.68 0.32 -0.32
51 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.68 0.32 -0.31
52 AT5G51210 oleosin3 oleosin3 0.68 0.31 -0.3
53 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 -0.67 0.33 -0.32
54 AT2G03670 cell division cycle 48B cell division cycle 48B -0.67 0.34 -0.31
55 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 -0.67 0.3 -0.33
56 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 -0.67 0.33 -0.31
57 AT4G28450 nucleotide binding;protein binding -0.67 0.33 -0.32
58 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 -0.67 0.32 -0.31
59 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 0.67 0.34 -0.33
60 AT3G14067 Subtilase family protein 0.67 0.3 -0.33
61 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog -0.67 0.3 -0.31
62 AT5G19820 ARM repeat superfamily protein embryo defective 2734 -0.67 0.33 -0.3
63 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 0.67 0.31 -0.31
64 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 0.67 0.31 -0.33
65 AT3G27170 chloride channel B ATCLC-B, chloride channel B -0.67 0.3 -0.33
66 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.31
67 AT1G16870 mitochondrial 28S ribosomal protein S29-related -0.67 0.3 -0.31
68 AT3G59020 ARM repeat superfamily protein -0.67 0.31 -0.31
69 AT5G61770 PETER PAN-like protein PETER PAN-like protein -0.67 0.3 -0.31
70 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.67 0.32 -0.32
71 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein 0.67 0.32 -0.3
72 AT2G29380 highly ABA-induced PP2C gene 3 highly ABA-induced PP2C gene 3 0.67 0.32 -0.31
73 AT3G04600 Nucleotidylyl transferase superfamily protein -0.67 0.32 -0.3
74 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 0.67 0.33 -0.31
75 AT2G35390 Phosphoribosyltransferase family protein -0.67 0.31 -0.31
76 AT2G37510 RNA-binding (RRM/RBD/RNP motifs) family protein -0.66 0.32 -0.3
77 AT1G54770 Fcf2 pre-rRNA processing protein -0.66 0.32 -0.33
78 AT1G14810 semialdehyde dehydrogenase family protein -0.66 0.3 -0.31
79 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 -0.66 0.31 -0.31
80 AT5G20400 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.31 -0.32
81 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 -0.66 0.32 -0.3
82 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.31 -0.31
83 AT2G36640 embryonic cell protein 63 embryonic cell protein 63,
embryonic cell protein 63		 0.66 0.32 -0.31
84 AT3G01800 Ribosome recycling factor -0.66 0.3 -0.31
85 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 0.66 0.32 -0.32
86 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein -0.66 0.31 -0.31
87 AT3G23690 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.66 0.31 -0.3
88 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.66 0.32 -0.32
89 AT1G09660 RNA-binding KH domain-containing protein -0.65 0.31 -0.3
90 AT1G56600 galactinol synthase 2 galactinol synthase 2, galactinol
synthase 2		 0.65 0.32 -0.31
91 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.65 0.32 -0.32
92 AT5G39350 Tetratricopeptide repeat (TPR)-like superfamily protein -0.65 0.29 -0.3
93 AT1G52360 Coatomer, beta' subunit -0.65 0.32 -0.32
94 AT5G42540 exoribonuclease 2 EXORIBONUCLEASE 2, exoribonuclease
2		 -0.65 0.34 -0.31
95 AT5G10290 leucine-rich repeat transmembrane protein kinase family
protein		 -0.65 0.34 -0.32
96 AT1G48570 zinc finger (Ran-binding) family protein -0.65 0.31 -0.31
97 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 -0.65 0.3 -0.33
98 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 0.65 0.32 -0.31
99 AT5G42970 Proteasome component (PCI) domain protein ATS4, CONSTITUTIVE
PHOTOMORPHOGENIC 14, CONSTITUTIVE
PHOTOMORPHOGENIC 8, COP9
SIGNALOSOME SUBUNIT 4, EMBRYO
DEFECTIVE 134, FUSCA 4, FUSCA 8		 -0.65 0.31 -0.32
100 AT4G30840 Transducin/WD40 repeat-like superfamily protein -0.65 0.3 -0.31
101 AT3G46040 ribosomal protein S15A D ribosomal protein S15A D -0.65 0.28 -0.32
102 AT4G31830 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.32 -0.31
103 AT5G09270 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.64 0.32 -0.32
104 AT5G37300 O-acyltransferase (WSD1-like) family protein WSD1 0.64 0.34 -0.31
105 AT3G10050 L-O-methylthreonine resistant 1 L-O-methylthreonine resistant 1 -0.64 0.31 -0.32
106 AT5G23750 Remorin family protein 0.64 0.31 -0.32
107 AT2G20585 nuclear fusion defective 6 NUCLEAR FUSION DEFECTIVE 6 -0.64 0.32 -0.32
108 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 0.64 0.31 -0.32
109 AT2G32220 Ribosomal L27e protein family -0.64 0.3 -0.31
110 AT5G37670 HSP20-like chaperones superfamily protein 0.64 0.31 -0.32
111 AT1G63120 RHOMBOID-like 2 RHOMBOID-like 2, RHOMBOID-like 2 0.64 0.29 -0.33
112 AT4G19210 RNAse l inhibitor protein 2 ATP-binding cassette E2,
ARABIDOPSIS THALIANA RNASE L
INHIBITOR PROTEIN 2, RNAse l
inhibitor protein 2		 -0.64 0.32 -0.35
113 AT4G00440 Protein of unknown function (DUF3741) 0.64 0.3 -0.3
114 AT5G40530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.33 -0.31
115 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein -0.64 0.32 -0.33
116 AT1G79150 binding -0.64 0.32 -0.32
117 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative -0.64 0.33 -0.29
118 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.31 -0.3
119 AT1G63420 Arabidopsis thaliana protein of unknown function (DUF821) 0.63 0.31 -0.32
120 AT3G02480 Late embryogenesis abundant protein (LEA) family protein 0.63 0.31 -0.31
121 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.63 0.28 -0.34
122 AT1G21890 nodulin MtN21 /EamA-like transporter family protein 0.63 0.33 -0.33
123 AT2G26690 Major facilitator superfamily protein 0.63 0.33 -0.33
124 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 0.63 0.31 -0.31
125 AT1G65090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits
to 1033 proteins in 192 species: Archae - 0; Bacteria - 61;
Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42;
Other Eukaryotes - 598 (source: NCBI BLink).		 0.63 0.32 -0.35
126 AT5G59310 lipid transfer protein 4 lipid transfer protein 4 0.63 0.32 -0.3
127 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 0.62 0.34 -0.31
128 AT3G17950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.62 0.31 -0.3
129 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 0.62 0.34 -0.34
130 AT5G10930 CBL-interacting protein kinase 5 CBL-interacting protein kinase 5,
SNF1-RELATED PROTEIN KINASE 3.24		 0.62 0.31 -0.31
131 AT4G21650 Subtilase family protein 0.61 0.32 -0.32
132 AT3G01570 Oleosin family protein 0.61 0.3 -0.31
133 AT3G55530 RING/U-box superfamily protein SALT- AND DROUGHT-INDUCED RING
FINGER1		 0.61 0.32 -0.33
134 AT5G42200 RING/U-box superfamily protein 0.61 0.31 -0.32
135 AT2G12400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in
23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi -
0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 0.6 0.31 -0.33
136 AT2G20770 GCR2-like 2 GCR2-like 2 0.6 0.32 -0.32
137 AT5G09990 elicitor peptide 5 precursor elicitor peptide 5 precursor 0.6 0.31 -0.3
138 AT1G22640 myb domain protein 3 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 3, myb domain protein 3		 0.6 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0267 Zeatin cis-Zeatin cis-Zeatin cytokinins-O-glucoside biosynthesis,
cytokinins degradation,
cytokinins 7-N-glucoside biosynthesis,
cytokinins 9-N-glucoside biosynthesis,
cis-zeatin biosynthesis 		0.62 0.44 -0.43 C0267