AT3G53910 : -
Query Information
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AGICode AT3G53910
Description malate dehydrogenase-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G53910 malate dehydrogenase-related 1 0.3 -0.33
2 AT2G40790 C-terminal cysteine residue is changed to a serine 2 C-terminal cysteine residue is
changed to a serine 2, C-terminal
cysteine residue is changed to a
serine 2		 0.67 0.32 -0.32
3 AT2G02550 PIN domain-like family protein 0.62 0.31 -0.33
4 AT4G02490 transposable element gene -0.59 0.32 -0.32
5 AT5G46660 protein kinase C-like zinc finger protein -0.58 0.31 -0.32
6 AT4G35970 ascorbate peroxidase 5 ascorbate peroxidase 5 -0.58 0.33 -0.3
7 AT3G32160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 28 Blast hits
to 28 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.31 -0.3
8 AT3G30220 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 30 Blast hits
to 30 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.33 -0.32
9 AT4G31680 Transcriptional factor B3 family protein 0.58 0.3 -0.3
10 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.57 0.31 -0.32
11 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 -0.57 0.3 -0.3
12 AT3G28520 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.57 0.32 -0.3
13 AT2G23250 UDP-glucosyl transferase 84B2 UDP-glucosyl transferase 84B2 -0.57 0.33 -0.3
14 AT5G51760 Protein phosphatase 2C family protein ABA-hypersensitive germination 1 -0.56 0.32 -0.3
15 AT5G25750 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.56 0.28 -0.32
16 AT4G03710 transposable element gene 0.56 0.33 -0.31
17 AT2G13550 unknown protein; Has 23 Blast hits to 20 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink).		 -0.56 0.31 -0.33
18 AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein 0.55 0.31 -0.34
19 AT5G24480 Beta-galactosidase related protein 0.55 0.34 -0.33
20 AT5G51360 Transcription elongation factor (TFIIS) family protein -0.55 0.32 -0.32
21 AT1G65340 cytochrome P450, family 96, subfamily A, polypeptide 3 cytochrome P450, family 96,
subfamily A, polypeptide 3		 -0.55 0.31 -0.31
22 AT5G28560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; Has 0 Blast hits to 0 proteins in 0 species
(source: NCBI BLink).		 0.55 0.31 -0.31
23 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 -0.55 0.32 -0.34
24 AT5G44740 Y-family DNA polymerase H Y-family DNA polymerase H 0.54 0.31 -0.32
25 AT3G42350 transposable element gene -0.54 0.32 -0.3
26 AT5G18880 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 0.54 0.31 -0.31
27 AT5G06850 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.54 0.29 -0.31
28 AT3G60470 Plant protein of unknown function (DUF247) 0.53 0.3 -0.29
29 AT1G13220 nuclear matrix constituent protein-related CROWDED NUCLEI 2, LITTLE NUCLEI2 0.53 0.3 -0.31
30 AT4G07940 Protein of unknown function (DUF3245) -0.53 0.32 -0.33
31 AT1G14420 Pectate lyase family protein AT59 0.53 0.3 -0.32
32 AT1G73000 PYR1-like 3 PYR1-like 3, regulatory components
of ABA receptor 13		 0.52 0.31 -0.3
33 AT3G42220 transposable element gene 0.52 0.33 -0.3
34 AT4G11300 Protein of unknown function (DUF793) 0.52 0.33 -0.31
35 AT4G15300 cytochrome P450, family 702, subfamily A, polypeptide 2 cytochrome P450, family 702,
subfamily A, polypeptide 2		 -0.52 0.29 -0.32
36 AT5G11400 Protein kinase superfamily protein 0.52 0.31 -0.32
37 AT3G42880 Leucine-rich repeat protein kinase family protein -0.52 0.3 -0.32
38 AT2G42090 actin 9 actin 9 -0.51 0.3 -0.34
39 AT1G06070 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.51 0.32 -0.31
40 AT5G67430 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.51 0.32 -0.32
41 AT2G30380 Plant protein of unknown function (DUF641) 0.51 0.32 -0.33
42 AT1G74620 RING/U-box superfamily protein -0.5 0.3 -0.31
43 AT1G08270 CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST
Arabidopsis thaliana protein match is: AAA-type ATPase
family protein (TAIR:AT2G27600.1); Has 1133 Blast hits to
1133 proteins in 252 species: Archae - 47; Bacteria - 0;
Metazoa - 540; Fungi - 145; Plants - 223; Viruses - 0;
Other Eukaryotes - 178 (source: NCBI BLink).		 -0.5 0.32 -0.31
44 AT2G38150 alpha 1,4-glycosyltransferase family protein 0.5 0.32 -0.33
45 AT4G18490 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.5 0.33 -0.32
46 AT2G43890 Pectin lyase-like superfamily protein -0.5 0.32 -0.31
47 AT3G44760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root, flower; EXPRESSED
DURING: petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF626) (TAIR:AT3G44770.1); Has 9 Blast hits to 9
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.5 0.33 -0.33
48 AT5G14380 arabinogalactan protein 6 arabinogalactan protein 6 -0.5 0.32 -0.3
49 AT2G44250 Protein of Unknown Function (DUF239) -0.49 0.34 -0.32
50 AT3G09040 Pentatricopeptide repeat (PPR) superfamily protein 0.49 0.31 -0.32
51 AT1G52790 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.49 0.32 -0.3
52 AT3G28230 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene
silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 6 growth stages; CONTAINS
InterPro DOMAIN/s: Something about silencing protein 10
(Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis
thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp)
family protein (TAIR:AT2G43650.1); Has 374 Blast hits to
360 proteins in 175 species: Archae - 0; Bacteria - 4;
Metazoa - 107; Fungi - 115; Plants - 56; Viruses - 0; Other
Eukaryotes - 92 (source: NCBI BLink).		 -0.49 0.3 -0.33
53 AT4G11870 unknown protein; Has 98 Blast hits to 93 proteins in 36
species: Archae - 2; Bacteria - 26; Metazoa - 15; Fungi -
20; Plants - 2; Viruses - 0; Other Eukaryotes - 33 (source:
NCBI BLink).		 0.49 0.29 -0.32
54 AT4G26560 calcineurin B-like protein 7 calcineurin B-like protein 7 0.49 0.31 -0.32
55 AT5G50140 Ankyrin repeat family protein -0.48 0.3 -0.32
56 AT2G28270 Cysteine/Histidine-rich C1 domain family protein -0.48 0.32 -0.33
57 AT4G19510 Disease resistance protein (TIR-NBS-LRR class) 0.48 0.32 -0.31
58 AT1G23650 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.31 -0.3
59 AT2G12990 transposable element gene -0.48 0.34 -0.31
60 AT5G43822 Pentatricopeptide repeat (PPR) superfamily protein 0.48 0.3 -0.31
61 AT5G46850 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.48 0.31 -0.31
62 AT5G62420 NAD(P)-linked oxidoreductase superfamily protein 0.48 0.31 -0.31
63 AT1G70000 myb-like transcription factor family protein 0.48 0.31 -0.3
64 AT5G22875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.48 0.32 -0.32
65 AT3G33073 transposable element gene 0.47 0.32 -0.3
66 AT1G26795 Plant self-incompatibility protein S1 family 0.47 0.32 -0.3
67 AT1G17545 Protein phosphatase 2C family protein 0.47 0.32 -0.32
68 AT3G49630 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.46 0.32 -0.32
69 AT3G53790 TRF-like 4 TRF-like 4 0.46 0.33 -0.31
70 AT4G15710 unknown protein; Has 18 Blast hits to 18 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.46 0.29 -0.31
71 AT4G32375 Pectin lyase-like superfamily protein -0.46 0.29 -0.3
72 AT3G01020 ISCU-like 2 ISCU-LIKE 2, ISCU-like 2 -0.46 0.31 -0.33
73 AT1G09720 Kinase interacting (KIP1-like) family protein -0.46 0.29 -0.31
74 AT3G20690 F-box and associated interaction domains-containing protein 0.46 0.29 -0.32
75 AT2G34740 Protein phosphatase 2C family protein -0.45 0.33 -0.33
76 AT5G62830 F-box associated ubiquitination effector family protein -0.45 0.3 -0.32
77 AT4G34940 armadillo repeat only 1 armadillo repeat only 1 -0.44 0.3 -0.31
78 ATMG00890 hypothetical protein ORF106D -0.44 0.31 -0.31
79 AT5G60080 Protein kinase superfamily protein 0.44 0.32 -0.3
80 AT5G38750 asparaginyl-tRNA synthetase family -0.44 0.32 -0.3
81 AT1G73050 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 -0.44 0.32 -0.33
82 AT2G06180 transposable element gene 0.44 0.3 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
83 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.66 0.46 -0.44 C0073
84 C0127 Isorhamnetin-hexosyl-rhamnoside - - - -0.66 0.44 -0.47
85 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.58 0.46 -0.46 C0261
86 C0062 Betain - - - -0.54 0.32 -0.32