AT3G53900 : PYRIMIDINE R
Query Information
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AGICode AT3G53900
Description uracil phosphoribosyltransferase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 1 0.3 -0.31
2 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.93 0.3 -0.33
3 AT3G13120 Ribosomal protein S10p/S20e family protein 0.93 0.32 -0.3
4 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.92 0.3 -0.31
5 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.92 0.32 -0.31
6 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.92 0.34 -0.31
7 AT4G15510 Photosystem II reaction center PsbP family protein 0.92 0.28 -0.32
8 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.91 0.31 -0.31
9 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.91 0.32 -0.31
10 AT5G65220 Ribosomal L29 family protein 0.91 0.31 -0.29
11 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.91 0.31 -0.31
12 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.9 0.31 -0.34
13 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.9 0.29 -0.28
14 AT3G28460 methyltransferases 0.9 0.3 -0.33
15 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.9 0.33 -0.3
16 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.9 0.32 -0.32
17 AT5G47190 Ribosomal protein L19 family protein 0.9 0.34 -0.36
18 AT1G14270 CAAX amino terminal protease family protein 0.9 0.33 -0.31
19 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.9 0.32 -0.32
20 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.9 0.3 -0.32
21 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.9 0.3 -0.31
22 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.9 0.33 -0.32
23 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.9 0.33 -0.32
24 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.89 0.31 -0.28
25 AT5G66530 Galactose mutarotase-like superfamily protein 0.89 0.32 -0.32
26 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.89 0.3 -0.32
27 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.89 0.31 -0.32
28 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.89 0.32 -0.32
29 AT2G42070 nudix hydrolase homolog 23 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 23, nudix
hydrolase homolog 23, nudix
hydrolase homolog 23		 0.89 0.31 -0.33
30 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.89 0.3 -0.35
31 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.89 0.31 -0.29
32 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.89 0.31 -0.32
33 AT2G02500 Nucleotide-diphospho-sugar transferases superfamily protein ATMEPCT, ISPD,
2-C-METHYL-D-ERYTHRITOL
4-PHOSPHATE CYTIDYLTRANSFERASE		 0.89 0.33 -0.31
34 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.88 0.31 -0.32
35 AT4G34290 SWIB/MDM2 domain superfamily protein 0.88 0.3 -0.33
36 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.32 -0.32
37 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.3 -0.32
38 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.88 0.33 -0.3
39 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.88 0.29 -0.32
40 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.34 -0.32
41 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.88 0.3 -0.32
42 AT1G20020 ferredoxin-NADP(+)-oxidoreductase 2 LEAF FNR 2,
ferredoxin-NADP(+)-oxidoreductase
2		 0.88 0.33 -0.31
43 AT4G28780 GDSL-like Lipase/Acylhydrolase superfamily protein 0.88 0.31 -0.32
44 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.88 0.31 -0.32
45 AT2G22230 Thioesterase superfamily protein 0.88 0.3 -0.31
46 AT4G37510 Ribonuclease III family protein 0.88 0.31 -0.31
47 AT5G55220 trigger factor type chaperone family protein 0.88 0.31 -0.32
48 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.88 0.35 -0.3
49 AT1G78180 Mitochondrial substrate carrier family protein 0.88 0.33 -0.31
50 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 0.88 0.31 -0.31
51 AT4G17560 Ribosomal protein L19 family protein 0.87 0.31 -0.3
52 AT4G00180 Plant-specific transcription factor YABBY family protein YABBY3 0.87 0.32 -0.32
53 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.87 0.34 -0.29
54 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.87 0.33 -0.31
55 AT3G56650 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 0.87 0.31 -0.3
56 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.87 0.31 -0.35
57 AT1G20810 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.87 0.29 -0.3
58 AT3G14110 Tetratricopeptide repeat (TPR)-like superfamily protein FLUORESCENT IN BLUE LIGHT 0.87 0.33 -0.33
59 AT3G15680 Ran BP2/NZF zinc finger-like superfamily protein 0.87 0.32 -0.34
60 AT5G10910 mraW methylase family protein 0.86 0.32 -0.3
61 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.86 0.33 -0.31
62 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.86 0.33 -0.34
63 AT4G39970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.86 0.3 -0.33
64 AT4G18370 DEGP protease 5 DEGP protease 5, DEGP PROTEASE 5,
PROTEASE HHOA PRECUSOR		 0.86 0.31 -0.31
65 AT3G60210 GroES-like family protein 0.86 0.31 -0.29
66 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.86 0.3 -0.32
67 AT5G02120 one helix protein one helix protein, PIGMENT
DEFECTIVE 335		 0.86 0.32 -0.32
68 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.86 0.31 -0.31
69 AT4G28210 embryo defective 1923 embryo defective 1923 0.86 0.31 -0.31
70 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.86 0.32 -0.32
71 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.86 0.29 -0.3
72 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.31 -0.3
73 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.85 0.32 -0.32
74 AT4G24090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 144 Blast hits to 142
proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa
- 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes
- 15 (source: NCBI BLink).		 0.85 0.32 -0.32
75 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.31 -0.33
76 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.85 0.32 -0.31
77 AT3G25860 2-oxoacid dehydrogenases acyltransferase family protein LTA2, PLASTID E2 SUBUNIT OF
PYRUVATE DECARBOXYLASE		 0.85 0.33 -0.33
78 AT3G25660 Amidase family protein 0.85 0.34 -0.33
79 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.85 0.3 -0.32
80 AT4G18970 GDSL-like Lipase/Acylhydrolase superfamily protein 0.85 0.31 -0.29
81 AT2G28930 protein kinase 1B protein kinase 1B, protein kinase
1B		 0.85 0.32 -0.32
82 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.85 0.32 -0.31
83 AT2G39670 Radical SAM superfamily protein 0.85 0.31 -0.32
84 AT3G51140 Protein of unknown function (DUF3353) 0.85 0.31 -0.32
85 AT1G09970 Leucine-rich receptor-like protein kinase family protein LRR XI-23, receptor-like kinase 7 -0.84 0.35 -0.3
86 AT1G02850 beta glucosidase 11 beta glucosidase 11 -0.82 0.32 -0.3
87 AT3G14060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits
to 30 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.82 0.32 -0.33
88 AT5G66170 sulfurtransferase 18 sulfurtransferase 18 -0.81 0.31 -0.29
89 AT4G31240 protein kinase C-like zinc finger protein -0.8 0.31 -0.31
90 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.79 0.33 -0.31
91 AT1G63440 heavy metal atpase 5 heavy metal atpase 5 -0.79 0.3 -0.31
92 AT5G18780 F-box/RNI-like superfamily protein -0.79 0.32 -0.32
93 AT2G39350 ABC-2 type transporter family protein ATP-binding cassette G1 -0.79 0.31 -0.33
94 AT5G58730 pfkB-like carbohydrate kinase family protein -0.78 0.32 -0.32
95 AT5G35370 S-locus lectin protein kinase family protein -0.78 0.32 -0.31
96 AT1G17020 senescence-related gene 1 SENESCENCE-RELATED GENE 1,
senescence-related gene 1		 -0.77 0.32 -0.31
97 AT5G15730 Protein kinase superfamily protein AtCRLK2,
calcium/calmodulin-regulated
receptor-like kinase 2		 -0.77 0.31 -0.31
98 AT5G18270 Arabidopsis NAC domain containing protein 87 Arabidopsis NAC domain containing
protein 87		 -0.77 0.29 -0.31
99 AT1G64060 respiratory burst oxidase protein F respiratory burst oxidase protein
F, ARABIDOPSIS THALIANA
RESPIRATORY BURST OXIDASE HOMOLOG
F, respiratory burst oxidase
protein F, RBOHAP108, RESPIRATORY
BURST OXIDASE PROTEIN F		 -0.77 0.33 -0.31
100 AT3G51440 Calcium-dependent phosphotriesterase superfamily protein -0.76 0.31 -0.31
101 AT2G42790 citrate synthase 3 citrate synthase 3 -0.76 0.33 -0.32
102 AT5G18310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G48500.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.76 0.32 -0.31
103 AT1G63460 glutathione peroxidase 8 ATGPX8, glutathione peroxidase 8 -0.76 0.32 -0.29
104 AT3G06860 multifunctional protein 2 MULTIFUNCTIONAL PROTEIN 2,
multifunctional protein 2		 -0.75 0.3 -0.34
105 AT4G28390 ADP/ATP carrier 3 ADP/ATP carrier 3, ATAAC3 -0.75 0.33 -0.32
106 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein -0.75 0.32 -0.31
107 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 -0.74 0.31 -0.32
108 AT4G14010 ralf-like 32 ralf-like 32 -0.74 0.33 -0.3
109 AT3G59700 lectin-receptor kinase lectin-receptor kinase,
lectin-receptor kinase,
LECTIN-RECEPTOR KINASE 1		 -0.74 0.31 -0.3
110 AT3G21240 4-coumarate:CoA ligase 2 4-coumarate:CoA ligase 2, AT4CL2 -0.74 0.32 -0.3
111 AT5G24090 chitinase A chitinase A, chitinase A -0.74 0.32 -0.3
112 AT3G20660 organic cation/carnitine transporter4 organic cation/carnitine
transporter4, organic
cation/carnitine transporter4		 -0.74 0.32 -0.3
113 AT3G57380 Glycosyltransferase family 61 protein -0.74 0.33 -0.33
114 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.74 0.3 -0.36
115 AT3G26590 MATE efflux family protein -0.73 0.32 -0.33
116 AT4G11350 Protein of unknown function (DUF604) -0.73 0.31 -0.3
117 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.73 0.33 -0.32
118 AT4G39955 alpha/beta-Hydrolases superfamily protein -0.73 0.31 -0.32
119 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.72 0.31 -0.29
120 AT1G63720 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in
96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi
- 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79
(source: NCBI BLink).		 -0.72 0.34 -0.31
121 AT1G65510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible, 4 anthesis, petal differentiation and
expansion stage, LP.08 eight leaves visible; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G65486.1); Has 22 Blast hits to 22 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.31 -0.32
122 AT4G24520 P450 reductase 1 ARABIDOPSIS CYTOCHROME REDUCTASE,
P450 reductase 1		 -0.72 0.31 -0.33
123 AT2G05710 aconitase 3 aconitase 3 -0.72 0.3 -0.33
124 AT5G13010 RNA helicase family protein embryo defective 3011 -0.71 0.33 -0.31
125 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.71 0.32 -0.3
126 AT5G67340 ARM repeat superfamily protein -0.71 0.3 -0.31
127 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.71 0.32 -0.3