AT3G53890 : -
Query Information
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AGICode AT3G53890
Description Ribosomal protein S21e
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G53890 Ribosomal protein S21e 1 0.31 -0.33
2 AT5G27770 Ribosomal L22e protein family 0.91 0.32 -0.31
3 AT3G56340 Ribosomal protein S26e family protein 0.91 0.3 -0.3
4 AT3G09200 Ribosomal protein L10 family protein 0.91 0.31 -0.31
5 AT3G47370 Ribosomal protein S10p/S20e family protein 0.9 0.33 -0.33
6 AT1G75560 zinc knuckle (CCHC-type) family protein 0.9 0.32 -0.31
7 AT5G47700 60S acidic ribosomal protein family 0.89 0.31 -0.32
8 AT1G04480 Ribosomal protein L14p/L23e family protein 0.89 0.33 -0.31
9 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.89 0.32 -0.31
10 AT5G03850 Nucleic acid-binding, OB-fold-like protein 0.89 0.31 -0.3
11 AT4G14320 Zinc-binding ribosomal protein family protein 0.89 0.33 -0.35
12 AT4G16720 Ribosomal protein L23/L15e family protein 0.88 0.31 -0.33
13 AT1G48830 Ribosomal protein S7e family protein 0.88 0.29 -0.33
14 AT2G43460 Ribosomal L38e protein family 0.88 0.31 -0.31
15 AT1G67430 Ribosomal protein L22p/L17e family protein 0.88 0.29 -0.31
16 AT3G23390 Zinc-binding ribosomal protein family protein 0.88 0.32 -0.31
17 AT3G07110 Ribosomal protein L13 family protein 0.88 0.3 -0.32
18 AT2G19730 Ribosomal L28e protein family 0.88 0.31 -0.32
19 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 0.88 0.3 -0.32
20 AT5G61170 Ribosomal protein S19e family protein 0.88 0.33 -0.32
21 AT2G36620 ribosomal protein L24 ribosomal protein L24 0.88 0.32 -0.31
22 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.87 0.33 -0.33
23 AT1G69620 ribosomal protein L34 ribosomal protein L34 0.87 0.31 -0.32
24 AT2G27720 60S acidic ribosomal protein family 0.87 0.31 -0.33
25 AT3G05590 ribosomal protein L18 ribosomal protein L18 0.87 0.32 -0.32
26 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 0.87 0.3 -0.33
27 AT3G60770 Ribosomal protein S13/S15 0.87 0.31 -0.32
28 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.87 0.31 -0.29
29 AT5G67510 Translation protein SH3-like family protein 0.86 0.3 -0.32
30 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.86 0.32 -0.32
31 AT2G20450 Ribosomal protein L14 0.86 0.3 -0.3
32 AT2G27710 60S acidic ribosomal protein family 0.85 0.36 -0.3
33 AT4G15000 Ribosomal L27e protein family 0.85 0.32 -0.31
34 AT1G34030 Ribosomal protein S13/S18 family 0.85 0.3 -0.31
35 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.85 0.3 -0.32
36 AT1G73230 Nascent polypeptide-associated complex NAC 0.85 0.31 -0.3
37 AT5G64140 ribosomal protein S28 ribosomal protein S28 0.85 0.32 -0.32
38 AT3G02080 Ribosomal protein S19e family protein 0.85 0.31 -0.29
39 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.85 0.34 -0.33
40 AT2G47610 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.85 0.34 -0.31
41 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.85 0.32 -0.31
42 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.84 0.3 -0.29
43 AT3G05560 Ribosomal L22e protein family 0.84 0.31 -0.31
44 AT5G57290 60S acidic ribosomal protein family 0.84 0.34 -0.31
45 AT4G31700 ribosomal protein S6 ribosomal protein S6, RPS6A 0.84 0.33 -0.31
46 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 0.84 0.33 -0.3
47 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.84 0.32 -0.32
48 AT3G09500 Ribosomal L29 family protein 0.84 0.31 -0.3
49 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 0.84 0.3 -0.32
50 AT3G52940 Ergosterol biosynthesis ERG4/ERG24 family EXTRA-LONG-LIFESPAN 1, FACKEL,
HYD2		 0.83 0.3 -0.3
51 AT3G61620 3'-5'-exoribonuclease family protein RRP41 0.83 0.31 -0.32
52 AT3G11510 Ribosomal protein S11 family protein 0.83 0.31 -0.32
53 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.83 0.3 -0.31
54 AT1G18080 Transducin/WD40 repeat-like superfamily protein ATARCA, RACK1A, RECEPTOR FOR
ACTIVATED C KINASE 1 A		 0.83 0.33 -0.32
55 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.83 0.31 -0.3
56 AT5G07090 Ribosomal protein S4 (RPS4A) family protein 0.83 0.31 -0.31
57 AT1G11545 xyloglucan endotransglucosylase/hydrolase 8 xyloglucan
endotransglucosylase/hydrolase 8		 0.83 0.31 -0.31
58 AT5G23900 Ribosomal protein L13e family protein 0.83 0.31 -0.33
59 AT3G43810 calmodulin 7 calmodulin 7 0.83 0.31 -0.32
60 AT5G11160 adenine phosphoribosyltransferase 5 adenine phosphoribosyltransferase
5		 0.83 0.3 -0.32
61 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.82 0.32 -0.33
62 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN		 0.82 0.32 -0.29
63 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 0.82 0.32 -0.35
64 AT5G04430 binding to TOMV RNA 1L (long form) BINDING TO TOMV RNA 1, binding to
TOMV RNA 1L (long form), BINDING
TO TOMV RNA 1S (SHORT FORM)		 0.82 0.32 -0.32
65 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 0.82 0.32 -0.31
66 AT5G51960 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein
(InterPro:IPR008011); Has 45 Blast hits to 45 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.82 0.33 -0.29
67 AT3G10610 Ribosomal S17 family protein 0.82 0.31 -0.33
68 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.82 0.31 -0.33
69 AT3G02560 Ribosomal protein S7e family protein 0.82 0.33 -0.32
70 AT4G13600 Carbohydrate-binding X8 domain superfamily protein 0.82 0.33 -0.29
71 AT5G23740 ribosomal protein S11-beta ribosomal protein S11-beta 0.82 0.33 -0.3
72 AT1G22780 Ribosomal protein S13/S18 family POINTED FIRST LEAVES, POINTED
FIRST LEAVES 1, 40S RIBOSOMAL
PROTEIN S18		 0.82 0.3 -0.31
73 AT1G22920 COP9 signalosome 5A ARABIDOPSIS JAB1 HOMOLOG 1, COP9
signalosome 5A, JAB1		 0.81 0.32 -0.31
74 AT3G52590 ubiquitin extension protein 1 EMBRYO DEFECTIVE 2167,
EARLY-RESPONSIVE TO DEHYDRATION
16, HAPLESS 4, ubiquitin extension
protein 1		 0.81 0.32 -0.34
75 AT4G13170 Ribosomal protein L13 family protein 0.81 0.29 -0.33
76 AT2G19720 ribosomal protein S15A B ribosomal protein S15A B 0.81 0.32 -0.32
77 AT2G32380 Transmembrane protein 97, predicted 0.81 0.29 -0.31
78 AT1G04340 HR-like lesion-inducing protein-related 0.8 0.31 -0.32
79 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.8 0.33 -0.29
80 AT4G31985 Ribosomal protein L39 family protein 0.8 0.32 -0.31
81 AT4G14960 Tubulin/FtsZ family protein TUA6 0.8 0.35 -0.31
82 AT2G43710 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 FATTY ACID BIOSYNTHESIS 2,
suppressor of SA insensitive 2		 0.8 0.32 -0.32
83 AT4G33865 Ribosomal protein S14p/S29e family protein 0.8 0.3 -0.33
84 AT5G08040 mitochondrial import receptor subunit TOM5 homolog mitochondrial import receptor
subunit TOM5 homolog		 0.8 0.31 -0.34
85 AT1G28260 Telomerase activating protein Est1 -0.8 0.32 -0.31
86 AT4G36210 Protein of unknown function (DUF726) -0.8 0.31 -0.33
87 AT3G24740 Protein of unknown function (DUF1644) -0.79 0.31 -0.35
88 AT4G17970 aluminum-activated, malate transporter 12 aluminum-activated, malate
transporter 12, ATALMT12		 -0.79 0.33 -0.31
89 AT3G16940 calmodulin binding;transcription regulators -0.78 0.32 -0.32
90 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.78 0.31 -0.33
91 AT3G20250 pumilio 5 pumilio 5, pumilio 5 -0.78 0.31 -0.33
92 AT5G28520 Mannose-binding lectin superfamily protein -0.78 0.33 -0.33
93 AT4G28490 Leucine-rich receptor-like protein kinase family protein HAESA, RECEPTOR-LIKE PROTEIN
KINASE 5		 -0.78 0.32 -0.33
94 AT3G08020 PHD finger family protein -0.77 0.31 -0.33
95 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.76 0.3 -0.32
96 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.76 0.33 -0.34
97 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.76 0.29 -0.31
98 AT3G01100 hypothetical protein 1 ARABIDOPSIS THALIANA HYPOTHETICAL
PROTEIN 1, hypothetical protein 1		 -0.76 0.33 -0.32
99 AT1G32740 SBP (S-ribonuclease binding protein) family protein -0.75 0.33 -0.3
100 AT1G12360 Sec1/munc18-like (SM) proteins superfamily keule -0.75 0.35 -0.35
101 AT1G09910 Rhamnogalacturonate lyase family protein -0.75 0.31 -0.32
102 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.74 0.33 -0.31
103 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.74 0.33 -0.31
104 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.74 0.33 -0.32
105 AT5G63560 HXXXD-type acyl-transferase family protein -0.74 0.32 -0.31
106 AT2G37650 GRAS family transcription factor -0.74 0.33 -0.33
107 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.34 -0.32
108 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 -0.73 0.3 -0.31
109 AT4G32160 Phox (PX) domain-containing protein -0.73 0.31 -0.3
110 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 -0.73 0.32 -0.31
111 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.72 0.33 -0.31
112 AT4G38350 Patched family protein -0.72 0.3 -0.33
113 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.72 0.33 -0.3
114 AT2G18050 histone H1-3 histone H1-3 -0.72 0.29 -0.32
115 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.71 0.33 -0.35
116 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein -0.71 0.33 -0.3
117 AT4G02020 SET domain-containing protein EZA1, SET DOMAIN-CONTAINING
PROTEIN 10, SWINGER		 -0.7 0.33 -0.29
118 AT3G01320 SIN3-like 1 SIN3-like 1 -0.7 0.34 -0.33
119 AT4G28040 nodulin MtN21 /EamA-like transporter family protein -0.7 0.33 -0.3
120 AT1G26450 Carbohydrate-binding X8 domain superfamily protein -0.69 0.3 -0.32
121 AT1G69360 Plant protein of unknown function (DUF863) -0.69 0.32 -0.33
122 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.69 0.32 -0.33
123 AT5G35180 Protein of unknown function (DUF1336) -0.69 0.32 -0.31
124 AT3G15880 WUS-interacting protein 2 TOPLESS-RELATED 4, WUS-interacting
protein 2		 -0.69 0.31 -0.33
125 AT3G07870 F-box and associated interaction domains-containing protein -0.69 0.33 -0.32
126 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.68 0.33 -0.33
127 AT5G05570 transducin family protein / WD-40 repeat family protein -0.68 0.31 -0.32
128 AT4G04960 Concanavalin A-like lectin protein kinase family protein -0.68 0.33 -0.29
129 AT4G23980 auxin response factor 9 auxin response factor 9 -0.68 0.33 -0.32
130 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 -0.68 0.33 -0.31
131 AT1G24600 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits
to 18 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.32 -0.31
132 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.68 0.31 -0.29
133 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.31 -0.31
134 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.67 0.34 -0.31
135 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.67 0.3 -0.31
136 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.31 -0.31
137 AT2G23980 cyclic nucleotide-gated channel 6 cyclic nucleotide-gated channel 6,
CYCLIC NUCLEOTIDE GATED CHANNEL 6,
cyclic nucleotide-gated channel 6		 -0.67 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
138 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.84 0.46 -0.44 C0123
139 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.79 0.46 -0.44
140 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.77 0.31 -0.32 C0260
141 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - -0.75 0.45 -0.45
142 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.7 0.32 -0.31 C0052
143 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.7 0.32 -0.3 C0257
144 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.69 0.3 -0.32 C0137
145 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		-0.68 0.3 -0.32 C0054