AT3G53460 : chloroplast RNA-binding protein 29
Query Information
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AGICode AT3G53460
Description chloroplast RNA-binding protein 29
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 1 0.32 -0.3
2 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.95 0.33 -0.31
3 AT1G56050 GTP-binding protein-related 0.93 0.3 -0.3
4 AT4G26370 antitermination NusB domain-containing protein 0.93 0.31 -0.31
5 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.93 0.32 -0.32
6 AT4G25990 CCT motif family protein CIL 0.93 0.29 -0.31
7 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.92 0.31 -0.33
8 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.92 0.33 -0.33
9 AT3G21300 RNA methyltransferase family protein 0.91 0.33 -0.29
10 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.91 0.31 -0.34
11 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.91 0.32 -0.31
12 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.91 0.29 -0.32
13 AT1G06190 Rho termination factor 0.9 0.32 -0.33
14 AT4G34290 SWIB/MDM2 domain superfamily protein 0.9 0.32 -0.32
15 AT3G58610 ketol-acid reductoisomerase 0.9 0.32 -0.32
16 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.9 0.33 -0.35
17 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.9 0.28 -0.32
18 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.9 0.32 -0.32
19 AT5G22640 MORN (Membrane Occupation and Recognition Nexus)
repeat-containing protein		 embryo defective 1211 0.9 0.3 -0.31
20 AT5G20630 germin 3 ARABIDOPSIS THALIANA GERMIN 3,
germin 3, GERMIN-LIKE PROTEIN 3,
GLP3A, GLP3B		 0.9 0.32 -0.33
21 AT2G39670 Radical SAM superfamily protein 0.9 0.31 -0.31
22 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.89 0.31 -0.33
23 AT4G26670 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.89 0.32 -0.34
24 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.89 0.33 -0.31
25 AT2G14880 SWIB/MDM2 domain superfamily protein 0.89 0.33 -0.3
26 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.89 0.33 -0.31
27 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.89 0.32 -0.31
28 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.89 0.35 -0.33
29 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.88 0.33 -0.34
30 AT1G62750 Translation elongation factor EFG/EF2 protein SNOWY COTYLEDON 1, ATSCO1/CPEF-G,
SNOWY COTYLEDON 1		 0.88 0.32 -0.32
31 AT2G28000 chaperonin-60alpha CHLOROPLAST CHAPERONIN 60ALPHA,
chaperonin-60alpha,
chaperonin-60alpha1, SCHLEPPERLESS		 0.88 0.3 -0.3
32 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.88 0.31 -0.32
33 AT5G48630 Cyclin family protein 0.88 0.3 -0.31
34 AT4G37510 Ribonuclease III family protein 0.88 0.31 -0.33
35 AT5G09240 ssDNA-binding transcriptional regulator 0.88 0.31 -0.29
36 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.88 0.32 -0.31
37 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.31 -0.3
38 AT4G34730 ribosome-binding factor A family protein 0.87 0.31 -0.32
39 AT3G49470 nascent polypeptide-associated complex subunit alpha-like
protein 2		 nascent polypeptide-associated
complex subunit alpha-like protein
2		 0.87 0.33 -0.31
40 AT1G16880 uridylyltransferase-related ACT domain repeats 11 0.87 0.32 -0.31
41 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.87 0.31 -0.34
42 AT1G72610 germin-like protein 1 A. THALIANA GERMIN-LIKE PROTEIN 1,
germin-like protein 1, GERMIN-LIKE
PROTEIN 1		 0.87 0.32 -0.32
43 AT5G41050 Pollen Ole e 1 allergen and extensin family protein 0.87 0.33 -0.32
44 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.87 0.3 -0.3
45 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.87 0.33 -0.32
46 AT3G26710 cofactor assembly of complex C cofactor assembly of complex C 0.87 0.32 -0.32
47 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.87 0.33 -0.29
48 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.87 0.32 -0.33
49 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.86 0.32 -0.33
50 AT5G19750 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.86 0.31 -0.31
51 AT3G56680 Single-stranded nucleic acid binding R3H protein 0.86 0.32 -0.3
52 AT5G48220 Aldolase-type TIM barrel family protein 0.86 0.3 -0.31
53 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.86 0.31 -0.32
54 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.86 0.32 -0.32
55 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.86 0.32 -0.31
56 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.86 0.31 -0.32
57 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.86 0.31 -0.29
58 AT3G22960 Pyruvate kinase family protein PKP-ALPHA, PLASTIDIAL PYRUVATE
KINASE 1		 0.86 0.31 -0.32
59 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.86 0.3 -0.32
60 AT5G55580 Mitochondrial transcription termination factor family
protein		 0.86 0.32 -0.31
61 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.86 0.32 -0.31
62 AT4G36390 Methylthiotransferase 0.85 0.32 -0.3
63 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.85 0.32 -0.33
64 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.85 0.3 -0.33
65 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.85 0.31 -0.33
66 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.85 0.3 -0.3
67 AT2G41560 autoinhibited Ca(2+)-ATPase, isoform 4 autoinhibited Ca(2+)-ATPase,
isoform 4		 0.85 0.31 -0.31
68 AT1G18090 5'-3' exonuclease family protein 0.85 0.31 -0.3
69 AT2G40760 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.84 0.32 -0.31
70 AT5G45820 CBL-interacting protein kinase 20 CBL-interacting protein kinase 20,
PROTEIN KINASE 18, SNF1-RELATED
PROTEIN KINASE 3.6		 0.84 0.31 -0.33
71 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.84 0.31 -0.31
72 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.84 0.31 -0.29
73 AT4G24670 tryptophan aminotransferase related 2 tryptophan aminotransferase
related 2		 0.84 0.31 -0.32
74 AT3G25860 2-oxoacid dehydrogenases acyltransferase family protein LTA2, PLASTID E2 SUBUNIT OF
PYRUVATE DECARBOXYLASE		 0.84 0.3 -0.33
75 AT5G08400 Protein of unknown function (DUF3531) 0.84 0.33 -0.32
76 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.84 0.33 -0.32
77 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.84 0.32 -0.31
78 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.84 0.31 -0.31
79 AT3G13740 Ribonuclease III family protein 0.84 0.29 -0.3
80 AT1G52080 actin binding protein family AR791 -0.83 0.33 -0.33
81 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.82 0.31 -0.31
82 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.81 0.32 -0.3
83 AT2G18480 Major facilitator superfamily protein -0.81 0.31 -0.34
84 AT1G13990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3110 (InterPro:IPR021503);
Has 25 Blast hits to 25 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.81 0.31 -0.31
85 AT1G53580 glyoxalase II 3 ETHE1-LIKE, GLYOXALASE 2-3,
glyoxalase II 3		 -0.8 0.32 -0.32
86 AT4G22920 non-yellowing 1 NON-YELLOWING 1, NON-YELLOWING 1 -0.8 0.33 -0.3
87 AT5G05110 Cystatin/monellin family protein -0.8 0.34 -0.3
88 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.8 0.3 -0.32
89 AT3G56310 Melibiase family protein -0.8 0.31 -0.3
90 AT2G47600 magnesium/proton exchanger magnesium/proton exchanger,
ATMHX1, magnesium/proton
exchanger, MAGNESIUM/PROTON
EXCHANGER 1		 -0.79 0.32 -0.32
91 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.79 0.34 -0.3
92 AT5G54080 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase -0.79 0.31 -0.31
93 AT3G07700 Protein kinase superfamily protein -0.79 0.32 -0.32
94 AT5G54840 Ras-related small GTP-binding family protein ATSGP1, SGP1 -0.79 0.31 -0.31
95 AT5G42050 DCD (Development and Cell Death) domain protein -0.78 0.31 -0.34
96 AT5G03490 UDP-Glycosyltransferase superfamily protein -0.78 0.29 -0.31
97 AT4G32250 Protein kinase superfamily protein -0.78 0.31 -0.31
98 AT3G59140 multidrug resistance-associated protein 14 ATP-binding cassette C10,
multidrug resistance-associated
protein 14, multidrug
resistance-associated protein 14		 -0.78 0.31 -0.31
99 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.78 0.31 -0.31
100 AT1G65430 IBR domain-containing protein ARIADNE 8, ARABIDOPSIS ARIADNE 8 -0.78 0.32 -0.31
101 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.78 0.33 -0.29
102 AT3G51000 alpha/beta-Hydrolases superfamily protein -0.77 0.33 -0.29
103 AT2G31260 autophagy 9 (APG9) autophagy 9, ATAPG9 -0.77 0.31 -0.33
104 AT1G54340 isocitrate dehydrogenase isocitrate dehydrogenase -0.77 0.32 -0.31
105 AT5G64510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 tunicamycin induced 1 -0.77 0.3 -0.3
106 AT2G37760 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C8		 -0.77 0.33 -0.32
107 AT2G23450 Protein kinase superfamily protein -0.76 0.32 -0.31
108 AT5G42810 inositol-pentakisphosphate 2-kinase 1 inositol-pentakisphosphate
2-kinase 1,
inositol-pentakisphosphate
2-kinase 1		 -0.76 0.31 -0.32
109 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.76 0.31 -0.31
110 AT5G22860 Serine carboxypeptidase S28 family protein -0.76 0.32 -0.31
111 AT5G02170 Transmembrane amino acid transporter family protein -0.76 0.32 -0.32
112 AT4G29950 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.76 0.31 -0.31
113 AT1G50940 electron transfer flavoprotein alpha electron transfer flavoprotein
alpha		 -0.76 0.3 -0.32
114 AT4G23050 PAS domain-containing protein tyrosine kinase family
protein		 -0.76 0.32 -0.33
115 AT3G11420 Protein of unknown function (DUF604) -0.76 0.32 -0.33
116 AT1G76150 enoyl-CoA hydratase 2 ATECH2, enoyl-CoA hydratase 2 -0.76 0.32 -0.29
117 AT3G11660 NDR1/HIN1-like 1 NDR1/HIN1-like 1 -0.76 0.34 -0.33
118 AT1G01720 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 2, ATAF1		 -0.75 0.33 -0.32
119 AT1G74410 RING/U-box superfamily protein -0.75 0.33 -0.31
120 AT5G64370 beta-ureidopropionase beta-ureidopropionase, PYRIMIDINE
3		 -0.75 0.31 -0.32
121 AT5G23580 calmodulin-like domain protein kinase 9 ARABIDOPSIS THALIANA
CALMODULIN-LIKE DOMAIN PROTEIN
KINASE 9, ATCPK12, calmodulin-like
domain protein kinase 9,
CALCIUM-DEPENDENT PROTEIN KINASE
12		 -0.75 0.33 -0.29
122 AT1G78670 gamma-glutamyl hydrolase 3 gamma-glutamyl hydrolase 3,
gamma-glutamyl hydrolase 3		 -0.75 0.32 -0.32
123 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1		 -0.75 0.31 -0.33
124 AT1G05560 UDP-glucosyltransferase 75B1 UDP-GLUCOSE TRANSFERASE 1,
UDP-glucosyltransferase 75B1		 -0.75 0.33 -0.31
125 AT4G10050 esterase/lipase/thioesterase family protein -0.75 0.3 -0.33
126 AT4G02360 Protein of unknown function, DUF538 -0.75 0.35 -0.31
127 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.75 0.31 -0.31
128 AT2G24040 Low temperature and salt responsive protein family -0.75 0.29 -0.32
129 AT3G54200 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.74 0.34 -0.31
130 AT3G48020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.33 -0.35
131 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.74 0.31 -0.3
132 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.74 0.31 -0.31
133 AT2G02370 SNARE associated Golgi protein family -0.74 0.32 -0.32
134 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5		 -0.74 0.33 -0.31
135 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.74 0.3 -0.32
136 AT5G39520 Protein of unknown function (DUF1997) -0.74 0.31 -0.31
137 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.74 0.32 -0.32
138 AT1G78280 transferases, transferring glycosyl groups -0.74 0.32 -0.31
139 AT5G17650 glycine/proline-rich protein -0.74 0.31 -0.32
140 AT2G40270 Protein kinase family protein -0.74 0.31 -0.31