AT3G52960 : -
Query Information
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AGICode AT3G52960
Description Thioredoxin superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52960 Thioredoxin superfamily protein 1 0.29 -0.3
2 AT4G01310 Ribosomal L5P family protein 0.91 0.31 -0.32
3 AT2G33450 Ribosomal L28 family 0.9 0.34 -0.32
4 AT5G52520 Class II aaRS and biotin synthetases superfamily protein OVULE ABORTION 6, PROLYL-TRNA
SYNTHETASE 1		 0.89 0.33 -0.33
5 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.88 0.33 -0.3
6 AT3G15690 Single hybrid motif superfamily protein 0.88 0.32 -0.32
7 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.3 -0.29
8 AT4G35250 NAD(P)-binding Rossmann-fold superfamily protein 0.87 0.33 -0.31
9 AT5G55710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised
conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 translocon at the inner envelope
membrane of chloroplasts 20-V,
translocon at the inner envelope
membrane of chloroplasts 20-V		 0.87 0.31 -0.31
10 AT2G27680 NAD(P)-linked oxidoreductase superfamily protein 0.87 0.34 -0.31
11 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.87 0.32 -0.32
12 AT5G16390 chloroplastic acetylcoenzyme A carboxylase 1 BIOTIN CARBOXYL CARRIER PROTEIN,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
BIOTIN CARBOXYL-CARRIER PROTEIN 1,
chloroplastic acetylcoenzyme A
carboxylase 1, CAC1-A, CAC1A		 0.87 0.31 -0.3
13 AT2G22230 Thioesterase superfamily protein 0.87 0.29 -0.31
14 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.87 0.33 -0.3
15 AT3G15110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi -
0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.87 0.32 -0.29
16 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.87 0.29 -0.33
17 AT5G63310 nucleoside diphosphate kinase 2 ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE
KINASE 2, NUCLEOSIDE DIPHOSPHATE
KINASE IA, NDPK IA IA, NDP KINASE
1A, nucleoside diphosphate kinase
2		 0.87 0.32 -0.31
18 AT1G70070 DEAD/DEAH box helicase, putative EMBRYO DEFECTIVE 25, INCREASED
SIZE EXCLUSION LIMIT 2, PIGMENT
DEFECTIVE 317		 0.86 0.33 -0.31
19 AT5G07020 proline-rich family protein 0.86 0.32 -0.34
20 AT3G27160 Ribosomal protein S21 family protein GLUCOSE HYPERSENSITIVE 1 0.86 0.29 -0.3
21 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.86 0.31 -0.33
22 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.86 0.34 -0.34
23 AT4G25370 Double Clp-N motif protein 0.86 0.3 -0.29
24 AT1G31160 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING
2		 0.86 0.33 -0.31
25 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 0.85 0.3 -0.33
26 AT2G38270 CAX-interacting protein 2 GLUTAREDOXIN, CAX-interacting
protein 2		 0.85 0.32 -0.31
27 AT4G38225 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.85 0.33 -0.33
28 AT5G54600 Translation protein SH3-like family protein 0.85 0.3 -0.31
29 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.85 0.35 -0.31
30 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 0.84 0.3 -0.29
31 AT5G59500 protein C-terminal S-isoprenylcysteine carboxyl
O-methyltransferases		 0.84 0.29 -0.32
32 AT4G01690 Flavin containing amine oxidoreductase family HEMG1, PPO1, PPOX 0.84 0.32 -0.31
33 AT1G45474 photosystem I light harvesting complex gene 5 photosystem I light harvesting
complex gene 5		 0.84 0.32 -0.32
34 AT1G04420 NAD(P)-linked oxidoreductase superfamily protein 0.84 0.3 -0.3
35 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.84 0.33 -0.32
36 AT2G21170 triosephosphate isomerase PLASTID ISOFORM TRIOSE PHOSPHATE
ISOMERASE, triosephosphate
isomerase		 0.84 0.3 -0.31
37 AT5G13120 cyclophilin 20-2 ARABIDOPSIS THALIANA CYCLOPHILIN
20-2, cyclophilin 20-2,
Photosynthetic NDH subcomplex L 5		 0.83 0.3 -0.34
38 AT3G26060 Thioredoxin superfamily protein ATPRX Q, peroxiredoxin Q 0.83 0.31 -0.32
39 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.83 0.33 -0.31
40 AT2G26340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast thylakoid
lumen, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38
proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.83 0.31 -0.32
41 AT1G01090 pyruvate dehydrogenase E1 alpha pyruvate dehydrogenase E1 alpha 0.82 0.31 -0.31
42 AT5G35100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.82 0.31 -0.34
43 AT5G24300 Glycogen/starch synthases, ADP-glucose type STARCH SYNTHASE 1, starch synthase
1		 0.82 0.3 -0.3
44 AT4G37040 methionine aminopeptidase 1D methionine aminopeptidase 1D 0.82 0.33 -0.3
45 AT3G11630 Thioredoxin superfamily protein 0.82 0.31 -0.31
46 AT2G39290 phosphatidylglycerolphosphate synthase 1 phosphatidylglycerolphosphate
synthase 1,
PHOSPHATIDYLGLYCEROLPHOSPHATE
SYNTHASE 1, PGS1		 0.81 0.31 -0.31
47 AT4G00180 Plant-specific transcription factor YABBY family protein YABBY3 0.81 0.34 -0.31
48 AT3G07670 Rubisco methyltransferase family protein 0.81 0.31 -0.31
49 AT1G12410 CLP protease proteolytic subunit 2 CLP protease proteolytic subunit
2, CLPR2, EMBRYO DEFECTIVE 3146,
NUCLEAR-ENCODED CLP PROTEASE P2		 0.81 0.33 -0.32
50 AT1G19740 ATP-dependent protease La (LON) domain protein 0.81 0.31 -0.31
51 AT3G24590 plastidic type i signal peptidase 1 plastidic type i signal peptidase
1		 0.81 0.31 -0.32
52 AT1G69740 Aldolase superfamily protein HEMB1 0.81 0.32 -0.31
53 AT4G33680 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 ABERRANT GROWTH AND DEATH 2 0.81 0.33 -0.31
54 AT1G43560 thioredoxin Y2 thioredoxin Y2, thioredoxin Y2 0.81 0.32 -0.28
55 AT1G20830 multiple chloroplast division site 1 MULTIPLE CHLOROPLAST DIVISION SITE
1		 0.81 0.29 -0.31
56 AT1G56190 Phosphoglycerate kinase family protein 0.81 0.33 -0.34
57 AT3G46630 Protein of unknown function (DUF3223) 0.81 0.33 -0.32
58 AT5G28750 Bacterial sec-independent translocation protein mttA/Hcf106 0.81 0.31 -0.31
59 AT3G15480 Protein of unknown function (DUF1218) 0.81 0.32 -0.3
60 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.76 0.31 -0.31
61 AT1G33750 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.73 0.32 -0.31
62 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.73 0.31 -0.3
63 AT5G49880 mitotic checkpoint family protein -0.73 0.31 -0.3
64 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.73 0.3 -0.34
65 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.72 0.33 -0.33
66 AT4G12080 AT-hook motif nuclear-localized protein 1 AT-hook motif nuclear-localized
protein 1, ATAHL1		 -0.72 0.31 -0.31
67 AT1G22440 Zinc-binding alcohol dehydrogenase family protein -0.71 0.32 -0.3
68 AT1G31950 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.71 0.32 -0.32
69 AT5G48940 Leucine-rich repeat transmembrane protein kinase family
protein		 -0.69 0.32 -0.31
70 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.69 0.31 -0.32
71 AT4G13235 embryo sac development arrest 21 embryo sac development arrest 21 -0.68 0.31 -0.31
72 AT2G23050 Phototropic-responsive NPH3 family protein MAB4/ENP/NPY1-LIKE 4, NAKED PINS
IN YUC MUTANTS 4		 -0.67 0.3 -0.33
73 AT3G54950 patatin-like protein 6 patatin-like protein 6,
PATATIN-LIKE PROTEIN 7,
patatin-related phospholipase
IIIbeta		 -0.67 0.32 -0.32
74 AT5G65210 bZIP transcription factor family protein TGA1 -0.66 0.3 -0.31
75 AT5G38030 MATE efflux family protein -0.66 0.31 -0.3
76 AT3G04570 AT-hook motif nuclear-localized protein 19 AT-hook motif nuclear-localized
protein 19		 -0.66 0.31 -0.34
77 AT4G23690 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.66 0.33 -0.32
78 AT5G61060 histone deacetylase 5 ATHDA5, histone deacetylase 5,
HDA5		 -0.66 0.32 -0.3
79 AT3G20960 cytochrome P450, family 705, subfamily A, polypeptide 33 cytochrome P450, family 705,
subfamily A, polypeptide 33		 -0.66 0.32 -0.31
80 AT1G56145 Leucine-rich repeat transmembrane protein kinase -0.65 0.35 -0.32
81 AT5G20550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.32 -0.31
82 AT5G19520 mechanosensitive channel of small conductance-like 9 ATMSL9, mechanosensitive channel
of small conductance-like 9		 -0.65 0.34 -0.33
83 AT5G01830 ARM repeat superfamily protein -0.65 0.31 -0.3
84 AT1G30080 Glycosyl hydrolase superfamily protein -0.65 0.32 -0.33
85 AT1G01190 cytochrome P450, family 78, subfamily A, polypeptide 8 cytochrome P450, family 78,
subfamily A, polypeptide 8		 -0.64 0.33 -0.32
86 AT1G30750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: hypocotyl, root, pollen
tube; Has 1177 Blast hits to 607 proteins in 189 species:
Archae - 0; Bacteria - 312; Metazoa - 195; Fungi - 185;
Plants - 27; Viruses - 16; Other Eukaryotes - 442 (source:
NCBI BLink).		 -0.64 0.33 -0.32
87 AT1G23560 Domain of unknown function (DUF220) -0.63 0.31 -0.32
88 AT1G44970 Peroxidase superfamily protein -0.63 0.31 -0.34
89 AT2G30840 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.63 0.35 -0.32
90 AT1G50560 cytochrome P450, family 705, subfamily A, polypeptide 25 cytochrome P450, family 705,
subfamily A, polypeptide 25		 -0.63 0.34 -0.32
91 AT4G28410 Tyrosine transaminase family protein -0.63 0.29 -0.3
92 AT2G01530 MLP-like protein 329 MLP-like protein 329,
(Zusammen-CA)-enhanced 2		 -0.63 0.32 -0.32
93 AT3G21420 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 LATERAL BRANCHING OXIDOREDUCTASE 1 -0.63 0.36 -0.31
94 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.63 0.32 -0.31
95 AT2G38370 Plant protein of unknown function (DUF827) -0.62 0.32 -0.32
96 AT1G02810 Plant invertase/pectin methylesterase inhibitor superfamily -0.62 0.3 -0.3
97 AT1G18980 RmlC-like cupins superfamily protein -0.62 0.32 -0.32
98 AT5G05960 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.34 -0.29
99 AT3G62270 HCO3- transporter family -0.61 0.34 -0.29
100 AT5G60520 Late embryogenesis abundant (LEA) protein-related -0.61 0.3 -0.31
101 AT3G27473 Cysteine/Histidine-rich C1 domain family protein -0.6 0.33 -0.32
102 AT1G48510 Surfeit locus 1 cytochrome c oxidase biogenesis protein -0.6 0.31 -0.32
103 AT4G28890 RING/U-box superfamily protein -0.6 0.3 -0.31
104 AT4G01480 pyrophosphorylase 5 pyrophosphorylase 5,
pyrophosphorylase 5		 -0.6 0.3 -0.32
105 AT1G61590 Protein kinase superfamily protein -0.6 0.31 -0.3
106 AT2G30040 mitogen-activated protein kinase kinase kinase 14 mitogen-activated protein kinase
kinase kinase 14		 -0.6 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0135 Kaempferol-hexosyl-dirhamnoside - - - -0.74 0.41 -0.44