AT3G52460 : -
Query Information
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AGICode AT3G52460
Description hydroxyproline-rich glycoprotein family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52460 hydroxyproline-rich glycoprotein family protein 1 0.29 -0.33
2 AT2G20740 Tetraspanin family protein -0.82 0.33 -0.34
3 AT4G22130 STRUBBELIG-receptor family 8 STRUBBELIG-receptor family 8 0.79 0.33 -0.31
4 AT3G47160 RING/U-box superfamily protein -0.78 0.32 -0.32
5 AT4G25090 Riboflavin synthase-like superfamily protein 0.78 0.33 -0.35
6 AT3G23800 selenium-binding protein 3 selenium-binding protein 3 0.76 0.3 -0.31
7 AT3G62360 Carbohydrate-binding-like fold 0.75 0.31 -0.31
8 AT2G38960 endoplasmic reticulum oxidoreductins 2 endoplasmic reticulum
oxidoreductins 2, endoplasmic
reticulum oxidoreductins 2		 0.75 0.32 -0.32
9 AT3G27950 GDSL-like Lipase/Acylhydrolase superfamily protein 0.75 0.32 -0.31
10 AT1G73740 UDP-Glycosyltransferase superfamily protein -0.74 0.32 -0.3
11 AT2G19350 Eukaryotic protein of unknown function (DUF872) -0.73 0.32 -0.32
12 AT1G30990 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.73 0.3 -0.3
13 AT4G22740 glycine-rich protein -0.73 0.32 -0.31
14 AT5G09370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.73 0.32 -0.32
15 AT2G25580 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.31 -0.31
16 AT1G66440 Cysteine/Histidine-rich C1 domain family protein 0.72 0.31 -0.31
17 AT2G26210 Ankyrin repeat family protein -0.72 0.32 -0.29
18 AT1G07745 homolog of RAD51 D ATRAD51D, homolog of RAD51 D,
SUPPRESOR OF SNI1		 -0.72 0.32 -0.34
19 AT3G26610 Pectin lyase-like superfamily protein 0.72 0.32 -0.3
20 AT1G26800 RING/U-box superfamily protein -0.72 0.32 -0.34
21 AT1G17790 DNA-binding bromodomain-containing protein -0.72 0.32 -0.31
22 AT5G59680 Leucine-rich repeat protein kinase family protein 0.71 0.32 -0.3
23 AT5G24230 Lipase class 3-related protein 0.71 0.32 -0.3
24 AT5G51890 Peroxidase superfamily protein -0.71 0.3 -0.31
25 AT3G57900 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.32 -0.32
26 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.3 -0.33
27 AT5G60870 Regulator of chromosome condensation (RCC1) family protein RCC1/UVR8/GEF-like 3 0.71 0.3 -0.31
28 AT5G38260 Protein kinase superfamily protein 0.71 0.33 -0.33
29 AT1G74820 RmlC-like cupins superfamily protein 0.7 0.33 -0.32
30 AT4G37950 Rhamnogalacturonate lyase family protein 0.7 0.33 -0.31
31 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.7 0.31 -0.31
32 AT1G77550 tubulin-tyrosine ligases;tubulin-tyrosine ligases 0.7 0.35 -0.31
33 AT2G38880 nuclear factor Y, subunit B1 HEME ACTIVATOR PROTEIN (YEAST)
HOMOLOG 3, NUCLEAR FACTOR Y
SUBUNIT B1, HEME ACTIVATOR PROTEIN
(YEAST) HOMOLOG 3, HEME ACTIVATOR
PROTEIN (YEAST) HOMOLOG 3A,
nuclear factor Y, subunit B1		 -0.7 0.33 -0.31
34 AT1G32850 ubiquitin-specific protease 11 ubiquitin-specific protease 11 0.7 0.29 -0.31
35 AT4G27470 RING membrane-anchor 3 ATRMA3, RING membrane-anchor 3 -0.7 0.33 -0.32
36 AT2G45750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.33 -0.31
37 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.7 0.32 -0.33
38 AT5G27280 Zim17-type zinc finger protein -0.7 0.33 -0.3
39 AT1G33280 NAC domain containing protein 15 NAC domain containing protein 15,
BEARSKIN 1, NAC domain containing
protein 15		 0.7 0.33 -0.31
40 AT4G09100 RING/U-box superfamily protein 0.69 0.32 -0.3
41 AT5G40360 myb domain protein 115 myb domain protein 115, myb domain
protein 115		 0.69 0.32 -0.33
42 AT2G15310 ADP-ribosylation factor B1A ADP-ribosylation factor B1A,
ADP-ribosylation factor B1A		 -0.69 0.33 -0.33
43 AT3G23430 phosphate 1 ARABIDOPSIS PHOSPHATE 1, phosphate
1		 0.69 0.3 -0.32
44 AT3G56880 VQ motif-containing protein -0.69 0.31 -0.33
45 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.69 0.3 -0.34
46 AT5G16120 alpha/beta-Hydrolases superfamily protein -0.69 0.33 -0.31
47 AT5G53460 NADH-dependent glutamate synthase 1 NADH-dependent glutamate synthase
1		 0.69 0.33 -0.33
48 AT3G13130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte; Has
140 Blast hits to 132 proteins in 41 species: Archae - 2;
Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51;
Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).		 -0.69 0.29 -0.31
49 AT5G04370 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 NAMT1 -0.69 0.33 -0.32
50 AT1G29390 cold regulated 314 thylakoid membrane 2 cold regulated 314 thylakoid
membrane 2, COLD REGULATED 314
INNER MEMBRANE 2		 -0.69 0.31 -0.31
51 AT2G39040 Peroxidase superfamily protein 0.69 0.33 -0.3
52 AT3G49860 ADP-ribosylation factor-like A1B ADP-ribosylation factor-like A1B,
ADP-ribosylation factor-like A1B		 0.69 0.32 -0.3
53 AT3G23280 XB3 ortholog 5 in Arabidopsis thaliana XB3 ortholog 5 in Arabidopsis
thaliana		 -0.68 0.32 -0.31
54 AT1G78450 SOUL heme-binding family protein 0.68 0.31 -0.32
55 AT5G13570 decapping 2 ATDCP2, decapping 2, TRIDENT -0.68 0.31 -0.34
56 AT4G31760 Peroxidase superfamily protein 0.68 0.29 -0.32
57 AT3G21360 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.3 -0.3
58 AT4G16780 homeobox protein 2 homeobox protein 2, ARABIDOPSIS
THALIANA HOMEOBOX PROTEIN 2, HAT4,
homeobox protein 2		 -0.68 0.31 -0.32
59 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 0.68 0.31 -0.3
60 AT3G21660 UBX domain-containing protein -0.67 0.31 -0.32
61 AT1G76660 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in
60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi -
22; Plants - 125; Viruses - 4; Other Eukaryotes - 139
(source: NCBI BLink).		 -0.67 0.31 -0.31
62 AT3G42690 transposable element gene 0.67 0.33 -0.3
63 AT5G45630 Protein of unknown function, DUF584 -0.67 0.31 -0.31
64 AT3G59490 unknown protein; Has 30 Blast hits to 30 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.67 0.29 -0.3
65 AT5G05230 RING/U-box superfamily protein -0.67 0.33 -0.31
66 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein 0.67 0.32 -0.3
67 AT5G48370 Thioesterase/thiol ester dehydrase-isomerase superfamily
protein		 -0.67 0.29 -0.35
68 AT2G37160 Transducin/WD40 repeat-like superfamily protein 0.67 0.31 -0.33
69 AT4G38390 root hair specific 17 root hair specific 17 0.67 0.33 -0.31
70 AT4G16120 COBRA-like protein-7 precursor ARABIDOPSIS THALIANA SEC61 BETA 1,
COBRA-like protein-7 precursor,
SEC61 BETA 1		 0.67 0.31 -0.31
71 AT1G21340 Dof-type zinc finger DNA-binding family protein 0.67 0.3 -0.31
72 AT3G60760 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.67 0.32 -0.31
73 AT5G47540 Mo25 family protein 0.67 0.34 -0.31
74 AT2G02515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: central cell, embryo;
EXPRESSED DURING: C globular stage; Has 18 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.67 0.29 -0.31
75 AT5G06480 Immunoglobulin E-set superfamily protein -0.66 0.31 -0.32
76 AT2G46070 mitogen-activated protein kinase 12 ATMPK12, MAPK12, mitogen-activated
protein kinase 12		 -0.66 0.32 -0.31
77 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.66 0.31 -0.32
78 AT5G24830 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.31 -0.33
79 AT4G16350 calcineurin B-like protein 6 calcineurin B-like protein 6,
SOS3-LIKE CALCIUM BINDING PROTEIN
2		 0.66 0.31 -0.29
80 AT1G08110 lactoylglutathione lyase family protein / glyoxalase I
family protein		 -0.66 0.31 -0.33
81 AT5G11490 adaptin family protein 0.66 0.3 -0.31
82 AT1G14020 O-fucosyltransferase family protein 0.66 0.34 -0.29
83 AT2G23660 LOB domain-containing protein 10 LOB domain-containing protein 10 0.66 0.3 -0.32
84 AT1G48040 Protein phosphatase 2C family protein 0.66 0.32 -0.32
85 AT1G01200 RAB GTPase homolog A3 ARABIDOPSIS RAB GTPASE HOMOLOG A3,
RAB GTPase homolog A3, RAB GTPase
homolog A3		 0.66 0.31 -0.35
86 AT1G78815 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 7 0.66 0.31 -0.29
87 AT1G32450 nitrate transporter 1.5 nitrate transporter 1.5 0.66 0.31 -0.3
88 AT5G50820 NAC domain containing protein 97 NAC domain containing protein 97,
NAC domain containing protein 97		 0.66 0.31 -0.3
89 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 0.66 0.32 -0.33
90 AT1G28070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G33510.1); Has 85 Blast hits
to 77 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.31 -0.33
91 AT1G54210 Ubiquitin-like superfamily protein AUTOPHAGY 12, ATATG12, AUTOPHAGY
12 A		 -0.65 0.31 -0.3
92 AT4G14390 Ankyrin repeat family protein 0.65 0.3 -0.31
93 AT3G02480 Late embryogenesis abundant protein (LEA) family protein -0.65 0.31 -0.33
94 AT5G22410 root hair specific 18 root hair specific 18 0.65 0.31 -0.31
95 AT4G36890 Nucleotide-diphospho-sugar transferases superfamily protein irregular xylem 14 0.65 0.31 -0.34
96 AT5G44850 Protein with RNI-like/FBD-like domains 0.65 0.32 -0.31
97 AT5G03570 iron regulated 2 ARABIDOPSIS THALIANA
IRON-REGULATED PROTEIN 2,
FERROPORTIN 2, iron regulated 2		 0.65 0.31 -0.3
98 AT4G05240 Ubiquitin-like superfamily protein 0.65 0.32 -0.31
99 AT5G08600 U3 ribonucleoprotein (Utp) family protein 0.65 0.31 -0.31
100 AT2G24640 ubiquitin-specific protease 19 ubiquitin-specific protease 19 0.65 0.31 -0.3
101 AT1G69330 RING/U-box superfamily protein 0.65 0.3 -0.31
102 AT3G26740 CCR-like CCR-like -0.65 0.32 -0.29
103 AT3G43630 Vacuolar iron transporter (VIT) family protein 0.65 0.32 -0.33
104 AT4G13160 Protein of unknown function, DUF593 -0.64 0.3 -0.32
105 AT5G23660 homolog of Medicago truncatula MTN3 AtSWEET12, homolog of Medicago
truncatula MTN3, SWEET12		 -0.64 0.35 -0.32
106 AT4G16830 Hyaluronan / mRNA binding family -0.64 0.32 -0.3
107 AT5G14300 prohibitin 5 prohibitin 5, prohibitin 5 -0.64 0.3 -0.32
108 AT1G28470 NAC domain containing protein 10 NAC domain containing protein 10,
NAC domain containing protein 10,
SECONDARY WALL-ASSOCIATED NAC
DOMAIN PROTEIN 3		 -0.63 0.32 -0.34
109 AT4G33810 Glycosyl hydrolase superfamily protein -0.62 0.28 -0.32
110 AT2G19000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 71 Blast hits to
71 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.32 -0.3
111 AT2G15890 maternal effect embryo arrest 14 maternal effect embryo arrest 14 -0.62 0.33 -0.32
112 AT4G33980 BEST Arabidopsis thaliana protein match is: cold regulated
gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.62 0.31 -0.32
113 AT3G56820 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.61 0.32 -0.33
114 AT3G17800 Protein of unknown function (DUF760) -0.61 0.31 -0.31
115 AT1G64690 branchless trichome BRANCHLESS TRICHOMES -0.61 0.3 -0.34
116 AT3G21520 DUF679 domain membrane protein 1 Arabidopsis thaliana DUF679 domain
membrane protein 1, DUF679 domain
membrane protein 1		 -0.61 0.31 -0.31
117 AT3G62020 germin-like protein 10 germin-like protein 10 -0.61 0.31 -0.32
118 AT5G35820 transposable element gene -0.61 0.32 -0.3
119 AT1G65020 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endoplasmic
reticulum, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast
hits to 69 proteins in 27 species: Archae - 0; Bacteria -
18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.6 0.28 -0.35
120 AT5G06320 NDR1/HIN1-like 3 NDR1/HIN1-like 3 -0.6 0.32 -0.31
121 AT4G27120 CONTAINS InterPro DOMAIN/s: DDRGK domain
(InterPro:IPR019153); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.6 0.31 -0.32
122 AT3G10410 SERINE CARBOXYPEPTIDASE-LIKE 49 CARBOXYPEPTIDASE Y, SERINE
CARBOXYPEPTIDASE-LIKE 49		 -0.6 0.31 -0.32
123 AT5G23180 BEST Arabidopsis thaliana protein match is: DNA-binding
storekeeper protein-related transcriptional regulator
(TAIR:AT4G01260.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.6 0.28 -0.31
124 AT5G06440 BEST Arabidopsis thaliana protein match is: Polyketide
cyclase/dehydrase and lipid transport superfamily protein
(TAIR:AT3G11720.3); Has 155 Blast hits to 153 proteins in
39 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi -
6; Plants - 101; Viruses - 0; Other Eukaryotes - 39
(source: NCBI BLink).		 -0.6 0.33 -0.32
125 AT4G30660 Low temperature and salt responsive protein family -0.6 0.31 -0.33
126 AT3G22940 F-box associated ubiquitination effector family protein -0.6 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.8 0.45 -0.42 C0225
128 C0198 Phosphatidylethanolamine-34:0 - - - 0.8 0.47 -0.44
129 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine 0.69 0.45 -0.42 C0031
130 C0211 PR_MST_2158.8 - - - -0.6 0.46 -0.45