AT3G50890 : homeobox protein 28
Query Information
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AGICode AT3G50890
Description homeobox protein 28
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G50890 homeobox protein 28 homeobox protein 28, homeobox
protein 28, ZINC FINGER
HOMEODOMAIN 7		 1 0.29 -0.32
2 AT3G14610 cytochrome P450, family 72, subfamily A, polypeptide 7 cytochrome P450, family 72,
subfamily A, polypeptide 7		 -0.77 0.31 -0.32
3 AT3G09980 Family of unknown function (DUF662) 0.76 0.32 -0.32
4 AT2G28410 unknown protein; Has 18 Blast hits to 18 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.75 0.34 -0.32
5 AT1G67870 glycine-rich protein 0.74 0.32 -0.33
6 AT5G10310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.74 0.33 -0.31
7 AT2G01400 unknown protein; Has 19 Blast hits to 19 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.74 0.3 -0.29
8 AT5G01090 Concanavalin A-like lectin family protein 0.74 0.33 -0.32
9 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 0.74 0.31 -0.3
10 AT3G01550 phosphoenolpyruvate (pep)/phosphate translocator 2 PHOSPHOENOLPYRUVATE
(PEP)/PHOSPHATE TRANSLOCATOR 2,
phosphoenolpyruvate
(pep)/phosphate translocator 2		 0.73 0.33 -0.33
11 AT1G77380 amino acid permease 3 amino acid permease 3, ATAAP3 -0.73 0.29 -0.3
12 AT5G02560 histone H2A 12 histone H2A 12 0.73 0.31 -0.32
13 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 0.72 0.32 -0.35
14 AT3G52900 Family of unknown function (DUF662) 0.72 0.32 -0.35
15 AT5G66800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.71 0.32 -0.31
16 AT3G08040 MATE efflux family protein ATFRD3, FERRIC REDUCTASE DEFECTIVE
3, MANGANESE ACCUMULATOR 1		 -0.71 0.31 -0.34
17 AT5G01370 ALC-interacting protein 1 ALC-interacting protein 1 0.71 0.29 -0.34
18 AT5G44400 FAD-binding Berberine family protein 0.71 0.33 -0.32
19 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 -0.71 0.29 -0.33
20 AT5G23400 Leucine-rich repeat (LRR) family protein 0.7 0.32 -0.34
21 AT2G40940 ethylene response sensor 1 ETHYLENE RESPONSE SENSOR, ethylene
response sensor 1		 -0.7 0.33 -0.32
22 AT1G78020 Protein of unknown function (DUF581) 0.7 0.32 -0.29
23 AT2G20340 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 0.69 0.31 -0.32
24 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein -0.69 0.29 -0.32
25 AT5G54830 DOMON domain-containing protein / dopamine
beta-monooxygenase N-terminal domain-containing protein		 -0.69 0.34 -0.33
26 AT2G15020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits
to 72 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.31 -0.3
27 AT1G20640 Plant regulator RWP-RK family protein 0.68 0.28 -0.31
28 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 0.68 0.32 -0.3
29 AT2G24260 LJRHL1-like 1 LJRHL1-like 1 -0.68 0.29 -0.31
30 AT3G22425 imidazoleglycerol-phosphate dehydratase HISN5A,
imidazoleglycerol-phosphate
dehydratase		 0.68 0.33 -0.31
31 AT1G19330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits
to 145 proteins in 43 species: Archae - 0; Bacteria - 0;
Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.68 0.32 -0.31
32 AT3G21720 isocitrate lyase isocitrate lyase -0.68 0.32 -0.32
33 AT2G44230 Plant protein of unknown function (DUF946) 0.67 0.32 -0.33
34 AT5G13280 aspartate kinase 1 ASPARTATE KINASE, aspartate kinase
1, ASPARTATE KINASE 1		 -0.67 0.32 -0.32
35 AT2G45960 plasma membrane intrinsic protein 1B ATHH2, NAMED PLASMA MEMBRANE
INTRINSIC PROTEIN 1;2, plasma
membrane intrinsic protein 1B,
TRANSMEMBRANE PROTEIN A		 0.67 0.34 -0.32
36 AT5G07030 Eukaryotic aspartyl protease family protein 0.67 0.32 -0.32
37 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 0.67 0.31 -0.31
38 AT1G65610 Six-hairpin glycosidases superfamily protein ARABIDOPSIS THALIANA GLYCOSYL
HYDROLASE 9A2, KORRIGAN 2		 -0.67 0.32 -0.31
39 AT3G50000 casein kinase II, alpha chain 2 ATCKA2, casein kinase II, alpha
chain 2		 -0.67 0.32 -0.29
40 AT1G03440 Leucine-rich repeat (LRR) family protein 0.67 0.33 -0.31
41 AT4G35500 Protein kinase superfamily protein -0.67 0.31 -0.32
42 AT5G03170 FASCICLIN-like arabinogalactan-protein 11 ARABIDOPSIS FASCICLIN-LIKE
ARABINOGALACTAN-PROTEIN 11,
FASCICLIN-like
arabinogalactan-protein 11		 0.67 0.3 -0.3
43 AT3G63010 alpha/beta-Hydrolases superfamily protein ATGID1B, GA INSENSITIVE DWARF1B -0.66 0.31 -0.31
44 AT5G26330 Cupredoxin superfamily protein 0.66 0.32 -0.32
45 AT4G03070 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 AOP, AOP1, AOP1.1 0.66 0.34 -0.32
46 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 0.66 0.33 -0.32
47 AT2G32860 beta glucosidase 33 beta glucosidase 33 0.66 0.3 -0.3
48 AT1G33790 jacalin lectin family protein -0.65 0.32 -0.33
49 AT2G39660 botrytis-induced kinase1 botrytis-induced kinase1 -0.65 0.3 -0.32
50 AT1G19715 Mannose-binding lectin superfamily protein 0.65 0.3 -0.32
51 AT1G17470 developmentally regulated G-protein 1 ATDRG, developmentally regulated
G-protein 1, developmentally
regulated G-protein 1		 -0.65 0.32 -0.31
52 AT1G22160 Protein of unknown function (DUF581) 0.65 0.31 -0.33
53 AT3G14230 related to AP2 2 related to AP2 2 -0.65 0.32 -0.3
54 AT3G08770 lipid transfer protein 6 lipid transfer protein 6 0.65 0.31 -0.3
55 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.65 0.33 -0.29
56 AT5G06610 Protein of unknown function (DUF620) 0.64 0.28 -0.33
57 AT1G31290 ARGONAUTE 3 ARGONAUTE 3 -0.64 0.32 -0.32
58 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain -0.64 0.31 -0.31
59 AT5G05090 Homeodomain-like superfamily protein 0.64 0.32 -0.33
60 AT3G56430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, vacuole; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G40800.1); Has 3121 Blast hits to 1477 proteins in
196 species: Archae - 12; Bacteria - 170; Metazoa - 996;
Fungi - 324; Plants - 132; Viruses - 59; Other Eukaryotes -
1428 (source: NCBI BLink).		 -0.64 0.32 -0.31
61 AT4G24010 cellulose synthase like G1 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G1, cellulose
synthase like G1		 0.64 0.3 -0.33
62 AT2G31440 INVOLVED IN: positive regulation of catalytic activity,
protein processing; LOCATED IN: integral to membrane;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22
(source: NCBI BLink).		 0.64 0.3 -0.32
63 AT3G22070 proline-rich family protein 0.64 0.33 -0.31
64 AT1G60140 trehalose phosphate synthase trehalose phosphate synthase,
trehalose phosphate synthase,
TREHALOSE PHOSPHATE SYNTHASE 10		 -0.64 0.3 -0.34
65 AT1G21910 Integrase-type DNA-binding superfamily protein dehydration response
element-binding protein 26		 -0.64 0.34 -0.31
66 AT1G53910 related to AP2 12 related to AP2 12 -0.64 0.31 -0.3
67 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 0.64 0.31 -0.31
68 AT2G41330 Glutaredoxin family protein 0.63 0.31 -0.33
69 AT5G24030 SLAC1 homologue 3 SLAC1 homologue 3 -0.63 0.3 -0.31
70 AT3G16310 mitotic phosphoprotein N' end (MPPN) family protein -0.63 0.33 -0.31
71 AT1G74820 RmlC-like cupins superfamily protein -0.63 0.31 -0.32
72 AT3G15550 unknown protein; Has 25732 Blast hits to 16979 proteins in
961 species: Archae - 144; Bacteria - 1801; Metazoa -
12681; Fungi - 1868; Plants - 912; Viruses - 94; Other
Eukaryotes - 8232 (source: NCBI BLink).		 0.63 0.33 -0.31
73 AT5G01720 RNI-like superfamily protein -0.63 0.33 -0.29
74 AT2G32430 Galactosyltransferase family protein 0.63 0.32 -0.31
75 AT5G54530 Protein of unknown function, DUF538 0.63 0.3 -0.33
76 AT4G15570 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 MAGATAMA 3 -0.63 0.31 -0.3
77 AT2G19780 Leucine-rich repeat (LRR) family protein 0.63 0.31 -0.31
78 AT2G42800 receptor like protein 29 receptor like protein 29, receptor
like protein 29		 0.63 0.29 -0.3
79 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein 0.63 0.33 -0.3
80 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.62 0.31 -0.34
81 AT5G06480 Immunoglobulin E-set superfamily protein 0.62 0.3 -0.3
82 AT5G09220 amino acid permease 2 amino acid permease 2 0.62 0.33 -0.3
83 AT5G40645 RPM1-interacting protein 4 (RIN4) family protein -0.62 0.31 -0.32
84 AT4G30290 xyloglucan endotransglucosylase/hydrolase 19 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 19,
xyloglucan
endotransglucosylase/hydrolase 19		 -0.62 0.3 -0.31
85 AT3G55370 OBF-binding protein 3 OBF-binding protein 3 0.62 0.32 -0.3
86 AT1G50590 RmlC-like cupins superfamily protein 0.62 0.31 -0.31
87 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 0.62 0.32 -0.31
88 AT5G03670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits
to 624 proteins in 104 species: Archae - 0; Bacteria - 18;
Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other
Eukaryotes - 192 (source: NCBI BLink).		 -0.62 0.31 -0.33
89 AT1G17630 Pentatricopeptide repeat (PPR-like) superfamily protein -0.62 0.3 -0.33
90 AT5G45850 Protein of unknown function (DUF688) 0.62 0.32 -0.31
91 AT2G22100 RNA-binding (RRM/RBD/RNP motifs) family protein -0.62 0.33 -0.32
92 AT3G22231 pathogen and circadian controlled 1 PATHOGEN AND CIRCADIAN CONTROLLED
1		 0.62 0.32 -0.33
93 AT2G36480 ENTH/VHS family protein -0.61 0.32 -0.31
94 AT3G53100 GDSL-like Lipase/Acylhydrolase superfamily protein 0.61 0.34 -0.31
95 AT1G61040 plus-3 domain-containing protein vernalization independence 5 -0.61 0.28 -0.31
96 AT1G06100 Fatty acid desaturase family protein 0.61 0.31 -0.31
97 AT3G10080 RmlC-like cupins superfamily protein 0.61 0.33 -0.3
98 AT1G20720 RAD3-like DNA-binding helicase protein 0.61 0.33 -0.33
99 AT3G46900 copper transporter 2 copper transporter 2 0.61 0.32 -0.34
100 AT4G01950 glycerol-3-phosphate acyltransferase 3 ATGPAT3, glycerol-3-phosphate
acyltransferase 3		 0.61 0.32 -0.3
101 AT1G09870 histidine acid phosphatase family protein -0.61 0.33 -0.31
102 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 -0.6 0.32 -0.3
103 AT1G06440 Ubiquitin carboxyl-terminal hydrolase family protein -0.6 0.29 -0.34
104 AT4G25790 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.6 0.31 -0.35
105 AT3G09260 Glycosyl hydrolase superfamily protein BGLU23, LONG ER BODY, PSR3.1,
PYK10		 -0.6 0.3 -0.31
106 AT5G47620 RNA-binding (RRM/RBD/RNP motifs) family protein -0.6 0.33 -0.3
107 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.29 -0.32
108 AT3G01720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in
23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 316; Viruses - 0; Other Eukaryotes - 58
(source: NCBI BLink).		 -0.59 0.34 -0.31
109 AT5G47540 Mo25 family protein -0.59 0.31 -0.31
110 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.59 0.33 -0.33
111 AT4G40070 RING/U-box superfamily protein -0.59 0.32 -0.34
112 AT1G26620 Plant protein of unknown function (DUF863) -0.59 0.3 -0.35
113 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.59 0.29 -0.33
114 AT4G08390 stromal ascorbate peroxidase stromal ascorbate peroxidase -0.58 0.31 -0.33
115 AT5G60790 ABC transporter family protein ATP-binding cassette F1,
ARABIDOPSIS THALIANA GENERAL
CONTROL NON-REPRESSIBLE 1, GENERAL
CONTROL NON-REPRESSIBLE 1		 -0.58 0.33 -0.31
116 AT5G25350 EIN3-binding F box protein 2 EIN3-binding F box protein 2 -0.58 0.33 -0.32
117 AT4G25160 U-box domain-containing protein kinase family protein -0.58 0.32 -0.33
118 AT2G34970 Trimeric LpxA-like enzyme -0.58 0.33 -0.31
119 AT2G36350 Protein kinase superfamily protein -0.57 0.31 -0.32
120 AT3G15170 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 54, ATNAC1, CUP-SHAPED
COTYLEDON1		 -0.57 0.32 -0.3
121 AT5G09330 NAC domain containing protein 82 NAC domain containing protein 82,
NAC domain containing protein 82,
VND-interacting 1		 -0.57 0.33 -0.31
122 AT1G16510 SAUR-like auxin-responsive protein family -0.57 0.31 -0.33
123 AT5G61140 U5 small nuclear ribonucleoprotein helicase -0.57 0.32 -0.33
124 AT1G79750 NADP-malic enzyme 4 Arabidopsis thaliana NADP-malic
enzyme 4, NADP-malic enzyme 4		 -0.57 0.3 -0.3
125 AT4G00390 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.57 0.31 -0.34
126 AT1G75580 SAUR-like auxin-responsive protein family -0.57 0.33 -0.36
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		-0.72 0.42 -0.44 C0227
128 C0126 Isorhamnetin-dirhamnoside - - - -0.68 0.46 -0.45