AT3G50070 : CYCLIN D3;3
Query Information
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AGICode AT3G50070
Description CYCLIN D3;3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G50070 CYCLIN D3;3 CYCLIN D3;3 1 0.32 -0.32
2 AT1G34340 alpha/beta-Hydrolases superfamily protein -0.8 0.3 -0.31
3 AT3G07270 GTP cyclohydrolase I 0.78 0.32 -0.33
4 AT1G29980 Protein of unknown function, DUF642 0.78 0.33 -0.33
5 AT2G28660 Chloroplast-targeted copper chaperone protein 0.77 0.33 -0.31
6 AT4G13550 triglyceride lipases;triglyceride lipases -0.76 0.33 -0.3
7 AT3G02790 zinc finger (C2H2 type) family protein 0.75 0.31 -0.35
8 AT3G05880 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2A -0.75 0.3 -0.32
9 AT4G02640 bZIP transcription factor family protein Arabidopsis thaliana basic leucine
zipper 10, BZO2H1		 -0.74 0.31 -0.31
10 AT2G38465 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 11 growth stages; Has 16 Blast hits to 16 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.73 0.31 -0.29
11 AT5G35980 yeast YAK1-related gene 1 yeast YAK1-related gene 1 -0.73 0.3 -0.32
12 AT1G16920 RAB GTPase homolog A1B RAB GTPase homolog A1B, RAB11, RAB
GTPase homolog A1B		 0.73 0.33 -0.3
13 AT3G49940 LOB domain-containing protein 38 LOB domain-containing protein 38 0.73 0.32 -0.33
14 AT2G15320 Leucine-rich repeat (LRR) family protein -0.73 0.31 -0.32
15 AT5G19340 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G05980.1); Has 1000 Blast hits
to 906 proteins in 61 species: Archae - 0; Bacteria - 4;
Metazoa - 62; Fungi - 36; Plants - 128; Viruses - 4; Other
Eukaryotes - 766 (source: NCBI BLink).		 0.73 0.31 -0.31
16 AT3G23880 F-box and associated interaction domains-containing protein 0.73 0.32 -0.3
17 AT1G09390 GDSL-like Lipase/Acylhydrolase superfamily protein 0.73 0.35 -0.3
18 AT1G75370 Sec14p-like phosphatidylinositol transfer family protein -0.72 0.31 -0.33
19 AT1G51090 Heavy metal transport/detoxification superfamily protein -0.72 0.32 -0.31
20 AT1G20430 unknown protein; Has 29 Blast hits to 29 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.31 -0.32
21 AT5G49900 Beta-glucosidase, GBA2 type family protein -0.71 0.3 -0.31
22 AT5G49930 zinc knuckle (CCHC-type) family protein embryo defective 1441 -0.71 0.3 -0.31
23 AT5G20250 Raffinose synthase family protein DARK INDUCIBLE 10, raffinose
synthase 6		 0.71 0.31 -0.31
24 AT3G62860 alpha/beta-Hydrolases superfamily protein 0.71 0.33 -0.3
25 AT5G17450 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 21		 -0.7 0.31 -0.33
26 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.7 0.31 -0.31
27 AT1G14900 high mobility group A high mobility group A 0.7 0.3 -0.3
28 AT5G56220 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.31 -0.31
29 AT5G61810 Mitochondrial substrate carrier family protein ATP/phosphate carrier 1 -0.7 0.31 -0.32
30 AT5G58670 phospholipase C1 ARABIDOPSIS THALIANA PHOSPHOLIPASE
C, phospholipase C1, phospholipase
C 1, phospholipase C1		 -0.69 0.31 -0.3
31 AT5G13960 SU(VAR)3-9 homolog 4 KRYPTONITE, SET DOMAIN PROTEIN 33,
SU(VAR)3-9 homolog 4		 0.69 0.33 -0.33
32 AT1G29395 COLD REGULATED 314 INNER MEMBRANE 1 COLD REGULATED 314 THYLAKOID
MEMBRANE 1, COLD REGULATED 314
INNER MEMBRANE 1, cold regulated
414 thylakoid membrane 1		 -0.68 0.32 -0.3
33 AT2G42850 cytochrome P450, family 718 cytochrome P450, family 718 0.68 0.34 -0.31
34 AT5G24810 ABC1 family protein -0.68 0.32 -0.29
35 AT1G14040 EXS (ERD1/XPR1/SYG1) family protein 0.68 0.31 -0.32
36 AT3G16650 Transducin/WD40 repeat-like superfamily protein 0.68 0.31 -0.32
37 AT1G73480 alpha/beta-Hydrolases superfamily protein -0.68 0.3 -0.31
38 AT4G19960 K+ uptake permease 9 ATKUP9, HAK9, KT9, K+ uptake
permease 9		 -0.68 0.33 -0.32
39 AT5G53160 regulatory components of ABA receptor 3 PYR1-like 8, regulatory components
of ABA receptor 3		 0.68 0.3 -0.33
40 AT1G32130 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS1 (FROM
YEAST INTERACTS WITH SPT6), HIGH
NITROGEN INSENSITIVE 9, IWS1		 -0.67 0.32 -0.3
41 AT4G03410 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.67 0.31 -0.31
42 AT1G17440 Transcription initiation factor TFIID subunit A CYTOKININ-HYPERSENSITIVE 1,
ENHANCED ETHYLENE RESPONSE 4,
TBP-ASSOCIATED FACTOR 12B		 -0.66 0.3 -0.3
43 AT1G23860 RS-containing zinc finger protein 21 RS-containing zinc finger protein
21, RS-containing zinc finger
protein 21, RS-containing zinc
finger protein 21, SRZ-21, SRZ21		 0.66 0.29 -0.31
44 AT1G70610 transporter associated with antigen processing protein 1 ATP-binding cassette B26,
transporter associated with
antigen processing protein 1,
transporter associated with
antigen processing protein 1		 -0.66 0.31 -0.34
45 AT1G10090 Early-responsive to dehydration stress protein (ERD4) -0.66 0.3 -0.31
46 AT4G22270 Protein of unknown function (DUF3537) ARABIDOPSIS MEMBRANE RELATED
BIGGER1, MEMBRANE RELATED BIGGER1		 -0.66 0.31 -0.31
47 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 -0.66 0.31 -0.32
48 AT2G44980 SNF2 domain-containing protein / helicase domain-containing
protein		 ALTERED SEED GERMINATION 3 0.66 0.31 -0.32
49 AT4G00231 ARM repeat superfamily protein maternal effect embryo arrest 50 0.65 0.32 -0.32
50 AT1G27920 microtubule-associated protein 65-8 microtubule-associated protein
65-8		 -0.65 0.28 -0.31
51 AT1G18870 isochorismate synthase 2 ARABIDOPSIS ISOCHORISMATE SYNTHASE
2, isochorismate synthase 2		 -0.65 0.31 -0.29
52 AT5G04220 Calcium-dependent lipid-binding (CaLB domain) family
protein		 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3,
synaptotagmin 3, SYTC		 -0.65 0.3 -0.32
53 AT1G25230 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.65 0.31 -0.3
54 AT5G13090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.34 -0.3
55 AT5G55140 ribosomal protein L30 family protein 0.65 0.31 -0.32
56 AT2G41790 Insulinase (Peptidase family M16) family protein -0.65 0.32 -0.32
57 AT1G10090 Early-responsive to dehydration stress protein (ERD4) -0.65 0.3 -0.3
58 AT4G29870 Oligosaccharyltransferase complex/magnesium transporter
family protein		 0.65 0.3 -0.32
59 AT4G01210 glycosyl transferase family 1 protein -0.65 0.29 -0.31
60 AT2G25850 poly(A) polymerase 2 poly(A) polymerase 2 -0.64 0.33 -0.32
61 AT3G04030 Homeodomain-like superfamily protein -0.64 0.31 -0.31
62 AT1G75550 glycine-rich protein -0.64 0.31 -0.32
63 AT4G02610 Aldolase-type TIM barrel family protein 0.64 0.3 -0.29
64 AT4G12000 SNARE associated Golgi protein family -0.64 0.31 -0.29
65 AT1G77260 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.31 -0.3
66 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 -0.64 0.3 -0.32
67 AT4G01550 NAC domain containing protein 69 NAC domain containing protein 69,
NAC domain containing protein 69,
NAC with Transmembrane Motif 2		 -0.63 0.34 -0.3
68 AT5G14120 Major facilitator superfamily protein 0.63 0.32 -0.33
69 AT1G49320 unknown seed protein like 1 unknown seed protein like 1,
unknown seed protein like 1		 0.63 0.3 -0.32
70 AT3G26730 RING/U-box superfamily protein -0.63 0.31 -0.31
71 AT3G62930 Thioredoxin superfamily protein 0.63 0.33 -0.28
72 AT2G44360 unknown protein; Has 23 Blast hits to 23 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.32 -0.3
73 AT2G42160 zinc finger (ubiquitin-hydrolase) domain-containing protein BRAP2 RING ZnF UBP
domain-containing protein 1		 -0.63 0.32 -0.32
74 AT4G11890 Protein kinase superfamily protein -0.63 0.31 -0.34
75 AT3G19540 Protein of unknown function (DUF620) 0.63 0.32 -0.32
76 AT2G31955 cofactor of nitrate reductase and xanthine dehydrogenase 2 cofactor of nitrate reductase and
xanthine dehydrogenase 2		 -0.63 0.32 -0.31
77 AT1G17350 NADH:ubiquinone oxidoreductase intermediate-associated
protein 30		 0.63 0.31 -0.31
78 AT3G48150 anaphase-promoting complex subunit 8 anaphase-promoting complex subunit
8, CDC23		 0.63 0.33 -0.31
79 AT1G60470 galactinol synthase 4 galactinol synthase 4, galactinol
synthase 4		 -0.63 0.3 -0.32
80 AT5G44090 Calcium-binding EF-hand family protein -0.63 0.31 -0.31
81 AT2G35900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; Has 32 Blast hits to 32 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.63 0.31 -0.32
82 AT4G22140 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 EARLY BOLTING IN SHORT DAYS 0.63 0.31 -0.3
83 AT2G27285 Coiled-coil domain-containing protein 55 (DUF2040) -0.62 0.3 -0.31
84 AT1G76580 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein		 -0.62 0.29 -0.3
85 AT1G58110 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.62 0.3 -0.32
86 AT5G48880 peroxisomal 3-keto-acyl-CoA thiolase 2 3-KETO-ACYL-COENZYME A THIOLASE 5,
PEROXISOMAL-3-KETO-ACYL-COA
THIOLASE 1, peroxisomal
3-keto-acyl-CoA thiolase 2		 -0.62 0.33 -0.32
87 AT2G16990 Major facilitator superfamily protein -0.62 0.32 -0.32
88 AT3G16870 GATA transcription factor 17 GATA transcription factor 17 0.62 0.29 -0.3
89 AT1G67480 Galactose oxidase/kelch repeat superfamily protein 0.61 0.32 -0.32
90 AT4G40060 homeobox protein 16 ATHB-16, homeobox protein 16,
homeobox protein 16		 0.61 0.33 -0.31
91 AT3G27620 alternative oxidase 1C alternative oxidase 1C 0.61 0.32 -0.32
92 AT1G09575 Protein of unknown function (DUF607) 0.61 0.3 -0.31
93 AT2G28630 3-ketoacyl-CoA synthase 12 3-ketoacyl-CoA synthase 12 0.61 0.3 -0.31
94 AT3G07410 RAB GTPase homolog A5B RAB GTPase homolog A5B, RAB GTPase
homolog A5B		 0.6 0.34 -0.31
95 AT3G22680 RNA-DIRECTED DNA METHYLATION 1 RNA-DIRECTED DNA METHYLATION 1 0.6 0.32 -0.29
96 AT5G39850 Ribosomal protein S4 0.6 0.32 -0.31
97 AT5G39600 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53,
mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50
proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa -
6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink).		 0.6 0.32 -0.3
98 AT3G16640 translationally controlled tumor protein translationally controlled tumor
protein		 0.6 0.31 -0.3
99 AT3G63390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.6 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
100 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.75 0.43 -0.41 C0107
101 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		-0.67 0.29 -0.32 C0014
102 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.67 0.33 -0.33 C0257
103 C0098 Glucose D-Glucose alpha-D-glucose; beta-D-glucose trehalose degradation II (trehalase),
indole glucosinolate breakdown (active in intact plant cell),
coumarin biosynthesis (via 2-coumarate),
glucosinolate biosynthesis from tryptophan,
sinapate ester biosynthesis,
GDP-glucose biosynthesis,
coniferin metabolism,
melibiose degradation,
indole glucosinolate breakdown (insect chewing induced) 		-0.63 0.31 -0.31 C0098
104 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.62 0.46 -0.46 C0087