AT3G49180 : ROOT INITIATION DEFECTIVE 3
Query Information
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AGICode AT3G49180
Description Transducin/WD40 repeat-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G49180 Transducin/WD40 repeat-like superfamily protein ROOT INITIATION DEFECTIVE 3 1 0.34 -0.33
2 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.89 0.32 -0.32
3 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.88 0.32 -0.34
4 AT3G59540 Ribosomal L38e protein family 0.87 0.32 -0.3
5 AT5G60990 DEA(D/H)-box RNA helicase family protein 0.86 0.32 -0.31
6 AT5G19510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.86 0.31 -0.32
7 AT4G29410 Ribosomal L28e protein family 0.86 0.32 -0.34
8 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.86 0.3 -0.34
9 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.86 0.3 -0.34
10 AT3G22230 Ribosomal L27e protein family 0.86 0.31 -0.32
11 AT5G09510 Ribosomal protein S19 family protein 0.85 0.31 -0.33
12 AT3G23620 Ribosomal RNA processing Brix domain protein 0.85 0.32 -0.33
13 AT3G10250 Plant protein 1589 of unknown function -0.84 0.31 -0.31
14 AT2G45710 Zinc-binding ribosomal protein family protein 0.84 0.3 -0.33
15 AT5G58420 Ribosomal protein S4 (RPS4A) family protein 0.84 0.33 -0.32
16 AT5G47210 Hyaluronan / mRNA binding family 0.84 0.32 -0.32
17 AT3G44750 histone deacetylase 3 ATHD2A, HISTONE DEACETYLASE 2A,
histone deacetylase 3, HDT1		 0.84 0.3 -0.31
18 AT3G03960 TCP-1/cpn60 chaperonin family protein 0.84 0.31 -0.31
19 AT1G18800 NAP1-related protein 2 NAP1-related protein 2 0.84 0.3 -0.31
20 AT2G19750 Ribosomal protein S30 family protein 0.83 0.32 -0.32
21 AT3G02820 zinc knuckle (CCHC-type) family protein 0.83 0.32 -0.31
22 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 0.83 0.32 -0.31
23 AT1G10840 translation initiation factor 3 subunit H1 translation initiation factor 3
subunit H1		 0.83 0.31 -0.29
24 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.83 0.33 -0.31
25 AT2G36170 Ubiquitin supergroup;Ribosomal protein L40e 0.83 0.29 -0.32
26 AT2G20490 nucleolar RNA-binding Nop10p family protein EMBRYO SAC DEVELOPMENT ARREST 27,
NOP10		 0.83 0.35 -0.3
27 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.83 0.33 -0.31
28 AT3G05810 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: IGR protein
motif (InterPro:IPR019083); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G26800.1); Has
62 Blast hits to 62 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.83 0.31 -0.3
29 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.83 0.32 -0.31
30 AT3G13230 RNA-binding KH domain-containing protein 0.83 0.3 -0.32
31 AT4G34555 Ribosomal protein S25 family protein 0.82 0.31 -0.31
32 AT1G71260 WHIRLY 2 WHIRLY 2, WHIRLY 2 0.82 0.3 -0.31
33 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.31 -0.32
34 AT3G57290 eukaryotic translation initiation factor 3E ATEIF3E-1, ATINT6, eukaryotic
translation initiation factor 3E,
INT-6, INT6, TIF3E1		 0.82 0.31 -0.32
35 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.82 0.34 -0.29
36 AT2G19740 Ribosomal protein L31e family protein 0.82 0.32 -0.31
37 AT1G26910 Ribosomal protein L16p/L10e family protein ribosomal protein L10 B 0.82 0.32 -0.31
38 AT1G28395 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast
hits to 89 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.32 -0.31
39 AT1G15930 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.81 0.3 -0.32
40 AT3G06610 DNA-binding enhancer protein-related 0.81 0.3 -0.33
41 AT3G57000 nucleolar essential protein-related 0.81 0.32 -0.34
42 AT2G41840 Ribosomal protein S5 family protein 0.81 0.31 -0.32
43 AT4G25630 fibrillarin 2 ATFIB2, fibrillarin 2 0.81 0.3 -0.33
44 AT5G62440 Protein of unknown function (DUF3223) 0.81 0.31 -0.32
45 AT5G06360 Ribosomal protein S8e family protein 0.8 0.34 -0.29
46 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.8 0.32 -0.32
47 AT3G56070 rotamase cyclophilin 2 rotamase cyclophilin 2 0.8 0.32 -0.31
48 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.8 0.32 -0.31
49 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.8 0.33 -0.31
50 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.8 0.3 -0.32
51 AT1G11320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: C globular stage, F mature embryo stage,
petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 46 Blast hits to 46
proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.8 0.34 -0.33
52 AT4G32720 La protein 1 La protein 1, La protein 1 0.79 0.31 -0.32
53 AT5G20890 TCP-1/cpn60 chaperonin family protein 0.79 0.34 -0.32
54 AT4G33250 eukaryotic translation initiation factor 3K ATTIF3K1, eukaryotic translation
initiation factor 3K, TIF3K1		 0.79 0.3 -0.33
55 AT5G14520 pescadillo-related 0.79 0.32 -0.32
56 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.79 0.31 -0.3
57 AT1G04270 cytosolic ribosomal protein S15 cytosolic ribosomal protein S15 0.78 0.31 -0.31
58 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.78 0.31 -0.3
59 AT2G39795 Mitochondrial glycoprotein family protein 0.78 0.33 -0.32
60 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B 0.78 0.31 -0.3
61 AT4G16700 phosphatidylserine decarboxylase 1 phosphatidylserine decarboxylase 1 0.78 0.33 -0.3
62 AT1G08360 Ribosomal protein L1p/L10e family 0.78 0.31 -0.32
63 AT5G16130 Ribosomal protein S7e family protein 0.78 0.31 -0.33
64 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.78 0.29 -0.3
65 AT1G80270 PENTATRICOPEPTIDE REPEAT 596 PENTATRICOPEPTIDE REPEAT 596 0.78 0.31 -0.31
66 AT2G44510 CDK inhibitor P21 binding protein 0.78 0.31 -0.32
67 AT3G56090 ferritin 3 ferritin 3, ferritin 3 0.78 0.32 -0.32
68 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 -0.77 0.32 -0.34
69 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY		 -0.76 0.33 -0.3
70 AT4G18140 SCP1-like small phosphatase 4b SCP1-like small phosphatase 4b -0.75 0.32 -0.32
71 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.74 0.32 -0.3
72 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 -0.73 0.33 -0.31
73 AT3G47960 Major facilitator superfamily protein -0.73 0.3 -0.3
74 AT5G04040 Patatin-like phospholipase family protein SUGAR-DEPENDENT1 -0.73 0.29 -0.33
75 AT5G66730 C2H2-like zinc finger protein ENHYDROUS, INDETERMINATE DOMAIN 1 -0.71 0.31 -0.33
76 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.7 0.29 -0.32
77 AT1G52000 Mannose-binding lectin superfamily protein -0.68 0.3 -0.32
78 AT5G45350 proline-rich family protein -0.68 0.33 -0.33
79 AT3G21270 DOF zinc finger protein 2 DOF zinc finger protein 2, DOF
zinc finger protein 2		 -0.68 0.31 -0.35
80 AT1G41810 transposable element gene -0.68 0.31 -0.3
81 AT1G55280 Lipase/lipooxygenase, PLAT/LH2 family protein -0.67 0.32 -0.31
82 AT3G50650 GRAS family transcription factor -0.67 0.31 -0.3
83 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.66 0.31 -0.29
84 AT3G17700 cyclic nucleotide-binding transporter 1 CYCLIC NUCLEOTIDE-GATED CHANNEL
20, cyclic nucleotide-binding
transporter 1, CNGC20		 -0.65 0.31 -0.31