AT3G48990 : -
Query Information
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AGICode AT3G48990
Description AMP-dependent synthetase and ligase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G48990 AMP-dependent synthetase and ligase family protein 1 0.31 -0.31
2 AT4G02380 senescence-associated gene 21 Arabidopsis thaliana late
embryogenensis abundant like 5,
senescence-associated gene 21		 0.82 0.33 -0.32
3 AT1G02475 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.8 0.31 -0.34
4 AT4G05390 root FNR 1 root FNR 1, root FNR 1 0.78 0.33 -0.3
5 AT1G77840 Translation initiation factor IF2/IF5 0.77 0.31 -0.3
6 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.77 0.3 -0.32
7 AT1G27980 dihydrosphingosine phosphate lyase ATDPL1, dihydrosphingosine
phosphate lyase		 0.76 0.3 -0.32
8 AT4G15260 UDP-Glycosyltransferase superfamily protein 0.75 0.33 -0.31
9 AT1G22160 Protein of unknown function (DUF581) -0.74 0.33 -0.31
10 AT5G14780 formate dehydrogenase formate dehydrogenase 0.74 0.31 -0.31
11 AT5G64440 fatty acid amide hydrolase fatty acid amide hydrolase, fatty
acid amide hydrolase		 0.72 0.31 -0.32
12 AT2G22490 Cyclin D2;1 ATCYCD2;1, Cyclin D2;1 0.72 0.3 -0.31
13 AT5G03730 Protein kinase superfamily protein AtCTR1, CONSTITUTIVE TRIPLE
RESPONSE 1, SUGAR-INSENSITIVE 1		 0.71 0.32 -0.32
14 AT5G01210 HXXXD-type acyl-transferase family protein 0.7 0.33 -0.31
15 AT5G39610 NAC domain containing protein 6 Arabidopsis NAC domain containing
protein 92, NAC domain containing
protein 2, NAC domain containing
protein 6, NAC domain containing
protein 2, NAC domain containing
protein 6, ORESARA 1		 0.7 0.3 -0.3
16 AT3G01640 glucuronokinase G ARABIDOPSIS THALIANA
GLUCURONOKINASE, glucuronokinase G		 0.69 0.3 -0.31
17 AT5G44390 FAD-binding Berberine family protein 0.69 0.31 -0.33
18 AT3G61440 cysteine synthase C1 BETA-SUBSTITUTED ALA SYNTHASE 3;1,
CYSTEINE SYNTHASE C1, cysteine
synthase C1		 0.69 0.32 -0.32
19 AT5G13500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G25265.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.69 0.3 -0.32
20 AT1G65930 cytosolic NADP+-dependent isocitrate dehydrogenase cytosolic NADP+-dependent
isocitrate dehydrogenase		 0.68 0.32 -0.31
21 AT4G25480 dehydration response element B1A ATCBF3, C-REPEAT BINDING FACTOR
3, dehydration response element
B1A		 -0.68 0.31 -0.31
22 AT5G64570 beta-D-xylosidase 4 ARABIDOPSIS THALIANA
BETA-D-XYLOSIDASE 4,
beta-D-xylosidase 4		 0.68 0.32 -0.32
23 AT2G44080 ARGOS-like ARGOS-like 0.68 0.32 -0.31
24 AT2G45210 SAUR-like auxin-responsive protein family 0.67 0.33 -0.31
25 AT2G41230 unknown protein; Has 75 Blast hits to 75 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ORGAN SIZE RELATED 1 0.67 0.31 -0.29
26 AT1G20640 Plant regulator RWP-RK family protein -0.67 0.31 -0.32
27 AT2G40940 ethylene response sensor 1 ETHYLENE RESPONSE SENSOR, ethylene
response sensor 1		 0.67 0.31 -0.31
28 AT5G39590 TLD-domain containing nucleolar protein 0.67 0.31 -0.32
29 AT1G04410 Lactate/malate dehydrogenase family protein cytosolic-NAD-dependent malate
dehydrogenase 1		 0.67 0.32 -0.34
30 AT3G15610 Transducin/WD40 repeat-like superfamily protein 0.66 0.32 -0.33
31 AT2G33470 glycolipid transfer protein 1 ARABIDOPSIS GLYCOLIPID TRANSFER
PROTEIN 1, glycolipid transfer
protein 1		 0.66 0.33 -0.31
32 AT4G22150 plant UBX domain-containing protein 3 plant UBX domain-containing
protein 3		 0.66 0.32 -0.33
33 AT5G20930 Protein kinase superfamily protein TOUSLED -0.66 0.31 -0.31
34 AT5G25350 EIN3-binding F box protein 2 EIN3-binding F box protein 2 0.65 0.32 -0.31
35 AT4G38250 Transmembrane amino acid transporter family protein 0.65 0.33 -0.32
36 AT5G53030 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF688 (InterPro:IPR007789); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G27810.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.34 -0.32
37 AT1G21320 nucleotide binding;nucleic acid binding 0.64 0.31 -0.31
38 AT4G26790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.64 0.3 -0.3
39 AT5G20990 molybdopterin biosynthesis CNX1 protein / molybdenum
cofactor biosynthesis enzyme CNX1 (CNX1)		 B73, CHLORATE RESISTANT 6,
CO-FACTOR FOR NITRATE REDUCTASE
AND XANTHINE DEHYDROGENASE,
CO-FACTOR FOR NITRATE REDUCTASE
AND XANTHINE DEHYDROGENASE 1,
SIRTINOL 4		 0.64 0.33 -0.3
40 AT5G09220 amino acid permease 2 amino acid permease 2 -0.63 0.32 -0.32
41 AT2G18230 pyrophosphorylase 2 pyrophosphorylase 2,
pyrophosphorylase 2		 -0.63 0.31 -0.34
42 AT1G77380 amino acid permease 3 amino acid permease 3, ATAAP3 0.63 0.32 -0.32
43 AT1G50590 RmlC-like cupins superfamily protein -0.63 0.34 -0.3
44 AT3G18160 peroxin 3-1 peroxin 3-1 -0.63 0.29 -0.31
45 AT1G07390 receptor like protein 1 receptor like protein 1, receptor
like protein 1		 0.63 0.29 -0.32
46 AT2G39660 botrytis-induced kinase1 botrytis-induced kinase1 0.62 0.3 -0.33
47 AT1G23140 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.62 0.29 -0.31
48 AT5G12170 CRT (chloroquine-resistance transporter)-like transporter 3 CRT (chloroquine-resistance
transporter)-like transporter 3		 0.62 0.33 -0.31
49 AT3G16770 ethylene-responsive element binding protein ethylene-responsive element
binding protein,
ethylene-responsive element
binding protein, ETHYLENE RESPONSE
FACTOR 72, RELATED TO AP2 3		 0.62 0.33 -0.32
50 AT2G17390 ankyrin repeat-containing 2B ankyrin repeat-containing 2B 0.62 0.3 -0.32
51 AT5G04590 sulfite reductase sulfite reductase 0.62 0.3 -0.34
52 AT1G56200 embryo defective 1303 embryo defective 1303 0.62 0.32 -0.29
53 AT4G32690 hemoglobin 3 ARABIDOPSIS HEMOGLOBIN 3,
hemoglobin 3		 0.62 0.33 -0.33
54 AT3G51610 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress; LOCATED IN:
endomembrane system; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink).		 NO PRIMEXINE AND PLASMA MEMBRANE
UNDULATION		 0.61 0.33 -0.32
55 AT5G60270 Concanavalin A-like lectin protein kinase family protein 0.61 0.33 -0.3
56 AT2G43350 glutathione peroxidase 3 glutathione peroxidase 3,
glutathione peroxidase 3		 0.61 0.31 -0.32
57 AT5G05710 Pleckstrin homology (PH) domain superfamily protein 0.61 0.31 -0.32
58 AT5G57655 xylose isomerase family protein 0.61 0.32 -0.32
59 AT3G44370 Membrane insertion protein, OxaA/YidC with
tetratricopeptide repeat domain		 0.61 0.3 -0.31
60 AT4G01950 glycerol-3-phosphate acyltransferase 3 ATGPAT3, glycerol-3-phosphate
acyltransferase 3		 -0.61 0.31 -0.31
61 AT5G09850 Transcription elongation factor (TFIIS) family protein 0.6 0.34 -0.34
62 AT2G28200 C2H2-type zinc finger family protein 0.6 0.32 -0.29
63 AT5G08570 Pyruvate kinase family protein 0.6 0.31 -0.32
64 AT3G17790 purple acid phosphatase 17 ATACP5, ATPAP17, purple acid
phosphatase 17		 0.6 0.34 -0.31
65 AT1G67600 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.59 0.32 -0.31
66 AT1G12780 UDP-D-glucose/UDP-D-galactose 4-epimerase 1 A. THALIANA UDP-GLC 4-EPIMERASE 1,
UDP-D-glucose/UDP-D-galactose
4-epimerase 1		 0.59 0.32 -0.3
67 AT5G04520 Protein of unknown function DUF455 0.59 0.29 -0.32
68 AT3G11200 alfin-like 2 alfin-like 2 0.59 0.32 -0.32
69 AT3G50000 casein kinase II, alpha chain 2 ATCKA2, casein kinase II, alpha
chain 2		 0.59 0.31 -0.31
70 AT1G11200 Protein of unknown function (DUF300) 0.59 0.3 -0.31
71 AT2G26980 CBL-interacting protein kinase 3 CBL-interacting protein kinase 3,
SNF1-RELATED PROTEIN KINASE 3.17		 0.59 0.31 -0.32
72 AT2G37890 Mitochondrial substrate carrier family protein 0.58 0.32 -0.32
73 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 0.58 0.33 -0.3
74 AT3G50410 OBF binding protein 1 OBF binding protein 1 -0.58 0.31 -0.3
75 AT1G36060 Integrase-type DNA-binding superfamily protein 0.58 0.32 -0.29
76 AT5G66380 folate transporter 1 folate transporter 1, folate
transporter 1		 0.58 0.31 -0.32
77 AT1G80370 Cyclin A2;4 Cyclin A2;4 -0.57 0.32 -0.29
78 AT2G31440 INVOLVED IN: positive regulation of catalytic activity,
protein processing; LOCATED IN: integral to membrane;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22
(source: NCBI BLink).		 -0.56 0.32 -0.32
79 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 -0.55 0.32 -0.32
80 AT5G20390 Glycosyl hydrolase superfamily protein -0.55 0.32 -0.33
81 AT4G23496 SPIRAL1-like5 SPIRAL1-like5 -0.55 0.31 -0.31
82 AT1G74420 fucosyltransferase 3 ATFUT3, fucosyltransferase 3 -0.54 0.32 -0.31
83 AT1G20823 RING/U-box superfamily protein -0.54 0.31 -0.31
84 AT2G32430 Galactosyltransferase family protein -0.53 0.31 -0.31
85 AT1G77390 CYCLIN A1;2 CYCLIN A1, CYCLIN A1;2, DYP, TARDY
ASYNCHRONOUS MEIOSIS		 -0.53 0.32 -0.31
86 AT3G25110 fatA acyl-ACP thioesterase fatA acyl-ACP thioesterase, fatA
acyl-ACP thioesterase		 -0.52 0.33 -0.32
87 AT4G31890 ARM repeat superfamily protein -0.52 0.31 -0.31
88 AT1G73540 nudix hydrolase homolog 21 nudix hydrolase homolog 21, nudix
hydrolase homolog 21		 -0.51 0.32 -0.33
89 AT2G20750 expansin B1 expansin B1, ATHEXP BETA 1.5,
expansin B1		 -0.51 0.31 -0.31
90 AT5G07770 Actin-binding FH2 protein -0.5 0.31 -0.32
91 AT2G38080 Laccase/Diphenol oxidase family protein ARABIDOPSIS LACCASE-LIKE
MULTICOPPER OXIDASE 4, IRREGULAR
XYLEM 12, LACCASE 4, LACCASE-LIKE
MULTICOPPER OXIDASE 4		 -0.5 0.32 -0.33
92 AT3G43020 transposable element gene -0.5 0.31 -0.32
93 AT3G27350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast
hits to 202 proteins in 35 species: Archae - 0; Bacteria -
3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.5 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
94 C0010 myo-Inositol-1-phosphate D,L-myo-Inositol-1-phosphate 1D-myo-Inositol (3)-phosphate myo-inositol biosynthesis,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) 		-0.76 0.47 -0.46 C0010
95 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.74 0.44 -0.45 C0016
96 C0197 Phosphatidylcholine-36:1 - Phosphatidylcholine-36:1 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		-0.61 0.5 -0.49 C0197
97 C0209 Phosphoric acid - - ascorbate biosynthesis,
GDP biosynthesis,
polysaccharide biosynthesis 		-0.57 0.3 -0.32
98 C0064 Campesterol 3-O-β-D-glucoside - - - -0.56 0.34 -0.34
99 C0238 Sitosterol 3-O-β-D-glucoside - 3-O-β-D-Glucosyl-β-sitosterol sphingolipid biosynthesis -0.55 0.36 -0.31 C0238