AT3G48930 : embryo defective 1080

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AGICode	AT3G48930
Description	Nucleic acid-binding, OB-fold-like protein

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT3G48930	Nucleic acid-binding, OB-fold-like protein	embryo defective 1080	1	0.32	-0.3
2	AT4G15000	Ribosomal L27e protein family		0.92	0.34	-0.33
3	AT3G47370	Ribosomal protein S10p/S20e family protein		0.92	0.29	-0.31
4	AT1G26880	Ribosomal protein L34e superfamily protein		0.92	0.31	-0.33
5	AT2G39460	ribosomal protein L23AA	ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, RIBOSOMAL PROTEIN L23A, RIBOSOMAL PROTEIN L23A1, ribosomal protein L23AA	0.92	0.32	-0.31
6	AT1G02780	Ribosomal protein L19e family protein	embryo defective 2386	0.91	0.34	-0.31
7	AT1G34030	Ribosomal protein S13/S18 family		0.91	0.3	-0.3
8	AT5G57290	60S acidic ribosomal protein family		0.91	0.32	-0.32
9	AT5G27770	Ribosomal L22e protein family		0.91	0.3	-0.33
10	AT2G34480	Ribosomal protein L18ae/LX family protein		0.91	0.33	-0.33
11	AT3G09500	Ribosomal L29 family protein		0.91	0.33	-0.32
12	AT5G47700	60S acidic ribosomal protein family		0.9	0.31	-0.32
13	AT5G67510	Translation protein SH3-like family protein		0.9	0.31	-0.32
14	AT1G67430	Ribosomal protein L22p/L17e family protein		0.9	0.32	-0.33
15	AT3G23390	Zinc-binding ribosomal protein family protein		0.9	0.32	-0.31
16	AT3G09200	Ribosomal protein L10 family protein		0.9	0.3	-0.3
17	AT3G06680	Ribosomal L29e protein family		0.9	0.33	-0.31
18	AT3G62870	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		0.89	0.33	-0.3
19	AT2G39390	Ribosomal L29 family protein		0.89	0.32	-0.3
20	AT4G33865	Ribosomal protein S14p/S29e family protein		0.89	0.32	-0.29
21	AT2G19730	Ribosomal L28e protein family		0.89	0.31	-0.31
22	AT4G16720	Ribosomal protein L23/L15e family protein		0.88	0.29	-0.32
23	AT2G27530	Ribosomal protein L1p/L10e family	PIGGYBACK1	0.88	0.31	-0.32
24	AT3G04840	Ribosomal protein S3Ae		0.88	0.34	-0.32
25	AT5G35620	Eukaryotic initiation factor 4E protein	EUKARYOTIC INITIATION FACTOR (ISO)4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, eukaryotic translation Initiation Factor isoform 4E, LSP, LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1	0.88	0.32	-0.33
26	AT2G44120	Ribosomal protein L30/L7 family protein		0.88	0.33	-0.31
27	AT1G04480	Ribosomal protein L14p/L23e family protein		0.88	0.32	-0.32
28	AT4G31985	Ribosomal protein L39 family protein		0.88	0.3	-0.29
29	AT5G39740	ribosomal protein L5 B	OLIGOCELLULA 7, ribosomal protein L5 B	0.88	0.32	-0.3
30	AT1G29250	Alba DNA/RNA-binding protein		0.88	0.28	-0.3
31	AT2G01250	Ribosomal protein L30/L7 family protein		0.88	0.32	-0.33
32	AT3G56340	Ribosomal protein S26e family protein		0.88	0.32	-0.33
33	AT4G25740	RNA binding Plectin/S10 domain-containing protein		0.88	0.31	-0.31
34	AT5G56670	Ribosomal protein S30 family protein		0.88	0.32	-0.32
35	AT2G36620	ribosomal protein L24	ribosomal protein L24	0.88	0.31	-0.34
36	AT3G04920	Ribosomal protein S24e family protein		0.87	0.31	-0.33
37	AT1G69620	ribosomal protein L34	ribosomal protein L34	0.87	0.33	-0.32
38	AT5G03850	Nucleic acid-binding, OB-fold-like protein		0.87	0.3	-0.3
39	AT5G41520	RNA binding Plectin/S10 domain-containing protein		0.87	0.32	-0.31
40	AT5G19510	Translation elongation factor EF1B/ribosomal protein S6 family protein		0.87	0.32	-0.31
41	AT4G00100	ribosomal protein S13A	ribosomal protein S13A, POINTED FIRST LEAF 2, RPS13, ribosomal protein S13A	0.87	0.32	-0.31
42	AT1G23290	Ribosomal protein L18e/L15 superfamily protein	RIBOSOMAL PROTEIN L27A, RPL27AB	0.87	0.31	-0.32
43	AT2G25210	Ribosomal protein L39 family protein		0.87	0.34	-0.32
44	AT5G10360	Ribosomal protein S6e	embryo defective 3010, Ribosomal protein small subunit 6b	0.87	0.3	-0.31
45	AT4G13170	Ribosomal protein L13 family protein		0.87	0.32	-0.32
46	AT3G53020	Ribosomal protein L24e family protein	RIBOSOMAL PROTEIN L24, RPL24B, SHORT VALVE1	0.87	0.33	-0.33
47	AT2G20450	Ribosomal protein L14		0.87	0.3	-0.31
48	AT5G61170	Ribosomal protein S19e family protein		0.87	0.31	-0.31
49	AT3G61110	ribosomal protein S27	ribosomal protein S27, ribosomal protein S27	0.87	0.32	-0.31
50	AT1G74270	Ribosomal protein L35Ae family protein		0.87	0.33	-0.29
51	AT2G27710	60S acidic ribosomal protein family		0.86	0.32	-0.3
52	AT3G25520	ribosomal protein L5	ribosomal protein L5, OLIGOCELLULA 5, PIGGYBACK3, RIBOSOMAL PROTEIN L5 A	0.86	0.32	-0.33
53	AT3G05560	Ribosomal L22e protein family		0.86	0.3	-0.31
54	AT3G05590	ribosomal protein L18	ribosomal protein L18	0.86	0.32	-0.31
55	AT3G62120	Class II aaRS and biotin synthetases superfamily protein		0.86	0.33	-0.3
56	AT5G07090	Ribosomal protein S4 (RPS4A) family protein		0.86	0.29	-0.31
57	AT3G07110	Ribosomal protein L13 family protein		0.86	0.31	-0.33
58	AT2G47610	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		0.86	0.3	-0.32
59	AT5G27850	Ribosomal protein L18e/L15 superfamily protein		0.85	0.31	-0.3
60	AT5G09510	Ribosomal protein S19 family protein		0.85	0.32	-0.31
61	AT3G49010	breast basic conserved 1	breast basic conserved 1, breast basic conserved 1, 40S RIBOSOMAL PROTEIN	0.85	0.33	-0.31
62	AT4G25890	60S acidic ribosomal protein family		0.85	0.3	-0.31
63	AT3G53430	Ribosomal protein L11 family protein		0.85	0.3	-0.32
64	AT3G11510	Ribosomal protein S11 family protein		0.85	0.31	-0.33
65	AT1G18540	Ribosomal protein L6 family protein		0.85	0.32	-0.31
66	AT5G22440	Ribosomal protein L1p/L10e family		0.85	0.31	-0.31
67	AT1G18080	Transducin/WD40 repeat-like superfamily protein	ATARCA, RACK1A, RECEPTOR FOR ACTIVATED C KINASE 1 A	0.85	0.32	-0.3
68	AT1G72370	40s ribosomal protein SA	AP40, 40s ribosomal protein SA, RP40, RPSAA	0.85	0.32	-0.31
69	AT3G58700	Ribosomal L5P family protein		0.85	0.3	-0.33
70	AT5G23900	Ribosomal protein L13e family protein		0.85	0.32	-0.31
71	AT2G40010	Ribosomal protein L10 family protein		0.85	0.3	-0.3
72	AT3G62940	Cysteine proteinases superfamily protein		0.85	0.32	-0.3
73	AT1G75560	zinc knuckle (CCHC-type) family protein		0.85	0.31	-0.31
74	AT3G09630	Ribosomal protein L4/L1 family		0.85	0.34	-0.31
75	AT3G11400	eukaryotic translation initiation factor 3G1	ATEIF3G1, eukaryotic translation initiation factor 3G1	0.84	0.31	-0.33
76	AT1G14320	Ribosomal protein L16p/L10e family protein	ribosomal protein L10, ribosomal protein L10 A, SUPPRESSOR OF ACAULIS 52	0.84	0.32	-0.34
77	AT5G14040	phosphate transporter 3;1	phosphate transporter 3;1	0.84	0.34	-0.32
78	AT2G36170	Ubiquitin supergroup;Ribosomal protein L40e		0.84	0.32	-0.31
79	AT1G17560	Ribosomal protein L14p/L23e family protein	HUELLENLOS	0.84	0.32	-0.34
80	AT2G36160	Ribosomal protein S11 family protein		0.84	0.31	-0.31
81	AT4G31700	ribosomal protein S6	ribosomal protein S6, RPS6A	0.84	0.35	-0.31
82	AT4G28490	Leucine-rich receptor-like protein kinase family protein	HAESA, RECEPTOR-LIKE PROTEIN KINASE 5	-0.84	0.32	-0.3
83	AT1G01100	60S acidic ribosomal protein family		0.84	0.3	-0.32
84	AT1G26740	Ribosomal L32p protein family		0.84	0.32	-0.31
85	AT3G59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein		0.84	0.3	-0.32
86	AT3G06700	Ribosomal L29e protein family		0.84	0.31	-0.31
87	AT1G15250	Zinc-binding ribosomal protein family protein		0.83	0.33	-0.34
88	AT3G07910	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		0.83	0.3	-0.29
89	AT3G53890	Ribosomal protein S21e		0.83	0.31	-0.33
90	AT2G33370	Ribosomal protein L14p/L23e family protein		0.83	0.33	-0.32
91	AT2G29260	NAD(P)-binding Rossmann-fold superfamily protein		0.83	0.32	-0.34
92	AT4G38100	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		0.83	0.33	-0.31
93	AT5G27700	Ribosomal protein S21e		0.83	0.31	-0.3
94	AT3G60245	Zinc-binding ribosomal protein family protein		0.83	0.33	-0.32
95	AT2G46680	homeobox 7	homeobox 7, ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7	-0.83	0.33	-0.31
96	AT1G14980	chaperonin 10	chaperonin 10	0.83	0.33	-0.3
97	AT1G44835	YbaK/aminoacyl-tRNA synthetase-associated domain		0.83	0.3	-0.31
98	AT4G26230	Ribosomal protein L31e family protein		0.83	0.33	-0.31
99	AT3G18740	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	receptor-like kinase 902	0.83	0.31	-0.34
100	AT5G04430	binding to TOMV RNA 1L (long form)	BINDING TO TOMV RNA 1, binding to TOMV RNA 1L (long form), BINDING TO TOMV RNA 1S (SHORT FORM)	0.82	0.31	-0.32
101	AT1G27400	Ribosomal protein L22p/L17e family protein		0.82	0.32	-0.31
102	AT2G43460	Ribosomal L38e protein family		0.82	0.32	-0.31
103	AT5G35530	Ribosomal protein S3 family protein		0.82	0.32	-0.32
104	AT5G15200	Ribosomal protein S4		0.82	0.34	-0.3
105	AT3G13920	eukaryotic translation initiation factor 4A1	eukaryotic translation initiation factor 4A1, RH4, TIF4A1	0.82	0.31	-0.32
106	AT4G09320	Nucleoside diphosphate kinase family protein	NDPK1	0.82	0.33	-0.31
107	AT2G39990	eukaryotic translation initiation factor 2	Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2, eukaryotic translation initiation factor 3 subunit F	0.82	0.3	-0.33
108	AT5G02450	Ribosomal protein L36e family protein		0.82	0.31	-0.3
109	AT5G50810	translocase inner membrane subunit 8	translocase inner membrane subunit 8	0.82	0.3	-0.31
110	AT3G02560	Ribosomal protein S7e family protein		0.82	0.31	-0.31
111	AT3G02080	Ribosomal protein S19e family protein		0.82	0.3	-0.32
112	AT2G40290	Eukaryotic translation initiation factor 2 subunit 1		0.82	0.34	-0.31
113	AT2G21580	Ribosomal protein S25 family protein		0.82	0.31	-0.3
114	AT3G16940	calmodulin binding;transcription regulators		-0.79	0.31	-0.32
115	AT4G17970	aluminum-activated, malate transporter 12	aluminum-activated, malate transporter 12, ATALMT12	-0.79	0.28	-0.33
116	AT2G37870	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		-0.79	0.3	-0.32
117	AT5G59220	highly ABA-induced PP2C gene 1	highly ABA-induced PP2C gene 1, senescence associated gene 113	-0.77	0.32	-0.31
118	AT3G15790	methyl-CPG-binding domain 11	ATMBD11, methyl-CPG-binding domain 11	-0.77	0.32	-0.34
119	AT1G28960	nudix hydrolase homolog 15	ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15, nudix hydrolase homolog 15	-0.76	0.32	-0.32
120	AT1G51140	basic helix-loop-helix (bHLH) DNA-binding superfamily protein		-0.76	0.32	-0.31
121	AT1G18710	myb domain protein 47	myb domain protein 47, myb domain protein 47	-0.75	0.31	-0.32
122	AT5G08380	alpha-galactosidase 1	alpha-galactosidase 1, alpha-galactosidase 1	-0.75	0.31	-0.32
123	AT4G19960	K+ uptake permease 9	ATKUP9, HAK9, KT9, K+ uptake permease 9	-0.75	0.32	-0.31
124	AT3G61890	homeobox 12	homeobox 12, ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12	-0.75	0.32	-0.31
125	AT3G11410	protein phosphatase 2CA	AHG3, ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA	-0.75	0.3	-0.34
126	AT1G07430	highly ABA-induced PP2C gene 2	highly ABA-induced PP2C gene 2	-0.74	0.29	-0.34
127	AT3G09770	RING/U-box superfamily protein	LOSS OF GDU 2	-0.74	0.31	-0.32
128	AT1G29400	MEI2-like protein 5	MEI2-like protein 5, MEI2-like protein 5	-0.73	0.32	-0.32
129	AT1G03380	homolog of yeast autophagy 18 (ATG18) G	homolog of yeast autophagy 18 (ATG18) G, homolog of yeast autophagy 18 (ATG18) G	-0.73	0.33	-0.32
130	AT5G22290	NAC domain containing protein 89	NAC domain containing protein 89, fructose-sensing quantitative trait locus 6, NAC domain containing protein 89	-0.73	0.31	-0.34
131	AT5G57050	Protein phosphatase 2C family protein	ABA INSENSITIVE 2, AtABI2	-0.73	0.32	-0.32
132	AT2G35060	K+ uptake permease 11	K+ uptake permease 11	-0.73	0.33	-0.33
133	AT2G35680	Phosphotyrosine protein phosphatases superfamily protein		-0.73	0.3	-0.33
134	AT3G29575	ABI five binding protein 3	ABI five binding protein 3	-0.72	0.32	-0.3
135	AT2G46270	G-box binding factor 3	G-box binding factor 3	-0.72	0.3	-0.29
136	AT3G13784	cell wall invertase 5	cell wall invertase 5, cell wall invertase 5	-0.71	0.31	-0.33
137	AT1G02310	Glycosyl hydrolase superfamily protein	endo-beta-mannanase 1	-0.7	0.32	-0.31
138	AT2G47770	TSPO(outer membrane tryptophan-rich sensory protein)-related	TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO(outer membrane tryptophan-rich sensory protein)-related	-0.7	0.33	-0.32
139	AT1G31480	shoot gravitropism 2 (SGR2)	SHOOT GRAVITROPISM 2	-0.69	0.35	-0.31
140	AT3G53980	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		-0.69	0.31	-0.31
141	AT4G33550	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein		-0.67	0.31	-0.31
142	AT1G67920	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.67	0.3	-0.32
143	AT3G17700	cyclic nucleotide-binding transporter 1	CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1, CNGC20	-0.67	0.3	-0.3

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
144	C0057	Anthranilic acid	-	Anthranilate	tryptophan biosynthesis, benzoylanthranilate biosynthesis	-0.8	0.43	-0.43
145	C0260	Tyrosine	L-(-)-Tyrosine	L-Tyrosine	tyrosine biosynthesis II, 4-hydroxyphenylpyruvate biosynthesis, tyrosine degradation I, tyrosine biosynthesis I, tRNA charging, hydroxycinnamic acid tyramine amides biosynthesis	-0.73	0.31	-0.31
146	C0054	Agmatine	-	Agmatine	putrescine biosynthesis I, putrescine biosynthesis II, superpathway of polyamine biosynthesis	-0.71	0.31	-0.32
147	C0257	Tryptophan	L-Tryptophan	L-Tryptophan	glucosinolate biosynthesis from tryptophan, IAA biosynthesis I, tryptophan biosynthesis, camalexin biosynthesis, tRNA charging	-0.71	0.33	-0.31
148	C0189	Nicotinic acid	-	Nicotinate	pyridine nucleotide cycling (plants), aldoxime degradation	-0.7	0.33	-0.3

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