AT3G49162 : -
Query Information
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AGICode AT3G49162
Description pseudogene of glycoside hydrolase family 28 protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G49162 pseudogene of glycoside hydrolase family 28 protein 1 0.33 -0.31
2 AT1G15590 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.75 0.3 -0.29
3 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 -0.75 0.31 -0.32
4 AT4G32620 Enhancer of polycomb-like transcription factor protein -0.73 0.32 -0.32
5 AT1G34080 transposable element gene -0.73 0.32 -0.32
6 AT2G37670 Transducin/WD40 repeat-like superfamily protein -0.73 0.31 -0.32
7 AT2G31100 alpha/beta-Hydrolases superfamily protein -0.72 0.32 -0.32
8 AT1G14070 fucosyltransferase 7 fucosyltransferase 7 -0.72 0.32 -0.33
9 AT1G28135 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 7 Blast hits to 7 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.32 -0.34
10 AT1G05400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06810.1); Has 31 Blast hits
to 31 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.33 -0.3
11 AT5G24130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: petal, leaf whorl, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.71 0.3 -0.33
12 AT1G71900 Protein of unknown function (DUF803) 0.71 0.29 -0.3
13 AT4G03950 Nucleotide/sugar transporter family protein -0.71 0.32 -0.33
14 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 -0.71 0.33 -0.29
15 AT5G10120 Ethylene insensitive 3 family protein -0.71 0.31 -0.31
16 AT2G29560 cytosolic enolase cytosolic enolase 0.71 0.31 -0.31
17 AT5G01440 BEST Arabidopsis thaliana protein match is: Insulinase
(Peptidase family M16) family protein (TAIR:AT1G06900.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.71 0.34 -0.32
18 AT4G16920 Disease resistance protein (TIR-NBS-LRR class) family -0.7 0.33 -0.33
19 AT2G01790 TRAF-like family protein -0.7 0.31 -0.33
20 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 -0.7 0.31 -0.32
21 AT4G38000 DNA binding with one finger 4.7 DNA binding with one finger 4.7 -0.7 0.31 -0.3
22 AT2G05200 transposable element gene -0.69 0.33 -0.3
23 AT1G79780 Uncharacterised protein family (UPF0497) -0.69 0.31 -0.31
24 AT5G14470 GHMP kinase family protein 0.69 0.32 -0.31
25 AT3G16380 poly(A) binding protein 6 poly(A) binding protein 6 -0.69 0.33 -0.31
26 AT3G22070 proline-rich family protein 0.69 0.31 -0.3
27 AT2G16210 Transcriptional factor B3 family protein -0.69 0.31 -0.31
28 AT5G06839 bZIP transcription factor family protein bZIP65, TGACG (TGA) motif-binding
protein 10		 -0.69 0.32 -0.32
29 AT4G01710 ARP2/3 complex 16 kDa subunit (p16-Arc) ARPC5, CROOKED 0.68 0.33 -0.3
30 AT3G52220 CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain
(InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins
in 346 species: Archae - 10; Bacteria - 184; Metazoa -
3955; Fungi - 1221; Plants - 712; Viruses - 24; Other
Eukaryotes - 2776 (source: NCBI BLink).		 0.68 0.3 -0.31
31 AT3G07440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits
to 37 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.68 0.31 -0.31
32 AT1G43790 tracheary element differentiation-related 6 tracheary element
differentiation-related 6		 0.68 0.32 -0.29
33 AT4G34850 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 5 -0.68 0.32 -0.32
34 AT3G01380 transferases;sulfuric ester
hydrolases;catalytics;transferases		 -0.68 0.29 -0.31
35 AT4G33450 myb domain protein 69 MYB DOMAIN PROTEIN 69, myb domain
protein 69		 -0.68 0.32 -0.3
36 AT2G06820 transposable element gene -0.67 0.3 -0.31
37 AT3G17290 transposable element gene -0.67 0.33 -0.33
38 AT2G31780 RING/U-box superfamily protein ARIADNE 11, ARABIDOPSIS ARIADNE 11 -0.67 0.34 -0.31
39 AT2G07070 transposable element gene -0.67 0.31 -0.31
40 AT5G42400 SET domain protein 25 ARABIDOPSIS TRITHORAX-RELATED7,
SET domain protein 25		 -0.67 0.32 -0.32
41 AT3G09740 syntaxin of plants 71 ATSYP71, syntaxin of plants 71 0.67 0.32 -0.32
42 AT5G51690 1-amino-cyclopropane-1-carboxylate synthase 12 1-amino-cyclopropane-1-carboxylate
synthase 12		 -0.67 0.3 -0.32
43 AT5G46310 WRKY family transcription factor -0.67 0.34 -0.32
44 AT4G25350 EXS (ERD1/XPR1/SYG1) family protein SHORT HYPOCOTYL UNDER BLUE1 -0.67 0.32 -0.29
45 AT2G15750 transposable element gene -0.67 0.29 -0.31
46 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.67 0.32 -0.31
47 AT1G12720 transposable element gene -0.67 0.35 -0.31
48 AT3G66656 AGAMOUS-like 91 AGAMOUS-like 91 0.67 0.31 -0.32
49 AT1G26530 PIN domain-like family protein 0.66 0.31 -0.29
50 AT4G12350 myb domain protein 42 myb domain protein 42, myb domain
protein 42		 -0.66 0.31 -0.31
51 AT4G32920 glycine-rich protein -0.66 0.32 -0.32
52 AT1G62940 acyl-CoA synthetase 5 acyl-CoA synthetase 5 -0.66 0.31 -0.3
53 AT1G26760 SET domain protein 35 ATXR1, SET domain protein 35 -0.66 0.32 -0.33
54 AT5G12180 calcium-dependent protein kinase 17 calcium-dependent protein kinase
17		 -0.66 0.3 -0.31
55 AT1G17590 nuclear factor Y, subunit A8 nuclear factor Y, subunit A8 -0.66 0.3 -0.31
56 AT1G43570 transposable element gene -0.66 0.32 -0.31
57 AT1G14550 Peroxidase superfamily protein -0.66 0.33 -0.32
58 AT5G65520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.32 -0.28
59 AT1G12630 Integrase-type DNA-binding superfamily protein -0.66 0.31 -0.3
60 AT1G79030 Chaperone DnaJ-domain superfamily protein -0.65 0.31 -0.32
61 AT1G69170 Squamosa promoter-binding protein-like (SBP domain)
transcription factor family protein		 -0.65 0.33 -0.32
62 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.33 -0.32
63 AT1G68000 phosphatidylinositol synthase 1 PHOSPHATIDYLINOSITOL SYNTHASE,
phosphatidylinositol synthase 1,
phosphatidylinositol synthase 1		 0.65 0.31 -0.32
64 AT3G25260 Major facilitator superfamily protein -0.65 0.32 -0.32
65 AT5G18180 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein -0.65 0.33 -0.32
66 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.3 -0.31
67 AT2G27390 proline-rich family protein -0.65 0.32 -0.32
68 AT3G24790 Protein kinase superfamily protein -0.65 0.32 -0.31
69 AT1G30350 Pectin lyase-like superfamily protein -0.65 0.3 -0.32
70 AT1G69120 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 7, APETALA1 -0.65 0.33 -0.33
71 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.34 -0.31
72 AT3G46960 RNA helicase, ATP-dependent, SK12/DOB1 protein -0.65 0.3 -0.32
73 AT5G35920 cytochrome P450, family 79, subfamily A, polypeptide 4
pseudogene		 cytochrome P450, family 79,
subfamily A, polypeptide 4
pseudogene		 0.65 0.3 -0.32
74 AT4G29285 low-molecular-weight cysteine-rich 24 low-molecular-weight cysteine-rich
24		 -0.65 0.32 -0.31
75 AT2G16835 Aquaporin-like superfamily protein -0.64 0.31 -0.3
76 AT3G61800 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2043 (InterPro:IPR018610), ENTH/VHS
(InterPro:IPR008942); Has 308 Blast hits to 279 proteins in
95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi
- 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91
(source: NCBI BLink).		 -0.64 0.3 -0.34
77 AT5G59590 UDP-glucosyl transferase 76E2 UDP-glucosyl transferase 76E2 -0.64 0.32 -0.32
78 AT1G26370 RNA helicase family protein -0.64 0.33 -0.31
79 ATMG00450 hypothetical protein ORF106B 0.64 0.31 -0.3
80 AT4G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G10870.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.64 0.31 -0.33
81 AT5G16790 Tho complex subunit 7/Mft1p AtTHO7, THO7 0.64 0.3 -0.29
82 AT5G65510 AINTEGUMENTA-like 7 AINTEGUMENTA-like 7, PLETHORA 7 -0.64 0.3 -0.32
83 AT5G57420 indole-3-acetic acid inducible 33 indole-3-acetic acid inducible 33 -0.64 0.32 -0.34
84 AT4G00420 Double-stranded RNA-binding domain (DsRBD)-containing
protein		 0.64 0.32 -0.31
85 AT2G36760 UDP-glucosyl transferase 73C2 UDP-glucosyl transferase 73C2 -0.64 0.32 -0.29
86 AT1G68480 C2H2 and C2HC zinc fingers superfamily protein JAGGED -0.64 0.31 -0.31
87 AT5G45080 phloem protein 2-A6 phloem protein 2-A6, phloem
protein 2-A6		 -0.64 0.33 -0.3
88 AT5G26700 RmlC-like cupins superfamily protein -0.64 0.32 -0.29
89 AT2G28680 RmlC-like cupins superfamily protein -0.64 0.3 -0.31
90 AT4G03770 transposable element gene 0.64 0.31 -0.32
91 AT4G03750 transposable element gene -0.64 0.3 -0.33
92 AT3G50420 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.32 -0.31
93 AT1G23560 Domain of unknown function (DUF220) -0.63 0.31 -0.3
94 AT2G44260 Plant protein of unknown function (DUF946) 0.63 0.3 -0.33
95 AT1G50470 F-box associated ubiquitination effector family protein -0.63 0.33 -0.29
96 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 -0.63 0.33 -0.28
97 AT3G12660 FASCICLIN-like arabinogalactan protein 14 precursor FASCICLIN-like arabinogalactan
protein 14 precursor		 -0.63 0.31 -0.31
98 AT1G35970 transposable element gene -0.63 0.3 -0.32
99 AT1G30010 Intron maturase, type II family protein -0.63 0.32 -0.31
100 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.3
101 AT1G79950 RAD3-like DNA-binding helicase protein -0.63 0.31 -0.32
102 AT3G42400 transposable element gene 0.63 0.32 -0.32
103 AT3G16890 pentatricopeptide (PPR) domain protein 40 pentatricopeptide (PPR) domain
protein 40		 -0.63 0.29 -0.3
104 AT5G50480 nuclear factor Y, subunit C6 nuclear factor Y, subunit C6 -0.63 0.33 -0.31
105 AT2G17110 Protein of unknown function (DUF630 and DUF632) -0.63 0.29 -0.32
106 AT4G29340 profilin 4 profilin 4 0.63 0.32 -0.33
107 AT3G09530 exocyst subunit exo70 family protein H3 exocyst subunit exo70 family
protein H3, exocyst subunit exo70
family protein H3		 -0.63 0.33 -0.32
108 AT2G23360 Plant protein of unknown function (DUF869) -0.63 0.29 -0.31
109 AT1G53790 F-box and associated interaction domains-containing protein -0.63 0.3 -0.32
110 AT4G35335 Nucleotide-sugar transporter family protein 0.63 0.3 -0.33
111 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.3 -0.33
112 AT5G13380 Auxin-responsive GH3 family protein -0.63 0.33 -0.31
113 AT2G02830 transposable element gene -0.63 0.34 -0.3
114 AT1G59950 NAD(P)-linked oxidoreductase superfamily protein -0.63 0.34 -0.31
115 AT5G01310 APRATAXIN-like APRATAXIN-like -0.63 0.31 -0.3
116 AT2G11360 transposable element gene -0.62 0.28 -0.32
117 AT4G10950 SGNH hydrolase-type esterase superfamily protein -0.62 0.3 -0.32
118 AT4G38680 glycine rich protein 2 ARABIDOPSIS THALIANA COLD SHOCK
PROTEIN 2, COLD SHOCK DOMAIN
PROTEIN 2, COLD SHOCK PROTEIN 2,
glycine rich protein 2		 0.62 0.31 -0.3
119 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.62 0.33 -0.32
120 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 -0.62 0.31 -0.31
121 AT2G20160 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family
protein		 ARABIDOPSIS SKP1-LIKE 17, MEIDOS -0.62 0.31 -0.32
122 AT1G28360 ERF domain protein 12 ERF DOMAIN PROTEIN 12, ERF domain
protein 12		 -0.62 0.31 -0.32
123 AT2G01280 Cyclin/Brf1-like TBP-binding protein maternal effect embryo arrest 65 -0.62 0.33 -0.3
124 AT1G68090 annexin 5 annexin 5, ANNEXIN ARABIDOPSIS
THALIANA 5		 -0.62 0.32 -0.31
125 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein		 -0.62 0.32 -0.3
126 AT5G09780 Transcriptional factor B3 family protein -0.62 0.29 -0.29
127 AT2G05980 transposable element gene -0.62 0.31 -0.3
128 AT4G02190 Cysteine/Histidine-rich C1 domain family protein 0.62 0.31 -0.31
129 AT3G56600 Protein kinase superfamily protein 0.61 0.31 -0.33
130 AT1G80420 BRCT domain-containing DNA repair protein ATXRCC1 0.61 0.31 -0.29
131 AT5G58850 myb domain protein 119 MYB DOMAIN PROTEIN 119, myb domain
protein 119		 0.61 0.3 -0.32
132 AT3G32100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.33
133 AT3G42730 transposable element gene 0.61 0.3 -0.32
134 AT2G22630 AGAMOUS-like 17 AGAMOUS-like 17 0.61 0.3 -0.3
135 AT1G54790 GDSL-like Lipase/Acylhydrolase superfamily protein 0.61 0.32 -0.31
136 AT1G05205 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.32 -0.28
137 AT3G29010 Biotin/lipoate A/B protein ligase family 0.61 0.32 -0.3
138 AT2G36710 Pectin lyase-like superfamily protein 0.6 0.32 -0.33
139 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.32 -0.29
140 AT2G32690 glycine-rich protein 23 GLYCINE-RICH PROTEIN 23,
glycine-rich protein 23		 0.6 0.32 -0.31
141 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 0.6 0.32 -0.33
142 AT3G29430 Terpenoid synthases superfamily protein 0.6 0.31 -0.3
143 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 0.6 0.32 -0.33
144 AT3G42340 transposable element gene 0.59 0.35 -0.31
145 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 0.59 0.32 -0.3
146 AT5G63135 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.31 -0.31
147 AT3G28770 Protein of unknown function (DUF1216) 0.59 0.3 -0.32
148 AT3G21550 DUF679 domain membrane protein 2 Arabidopsis thaliana DUF679 domain
membrane protein 2, DUF679 domain
membrane protein 2		 0.59 0.3 -0.31
149 AT3G59130 Cysteine/Histidine-rich C1 domain family protein 0.59 0.31 -0.29
150 AT3G42900 transposable element gene 0.59 0.31 -0.31
151 AT4G39753 Galactose oxidase/kelch repeat superfamily protein 0.58 0.3 -0.29
152 AT3G43500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G42080.1); Has 8 Blast hits to
8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.34 -0.32
153 AT1G20480 AMP-dependent synthetase and ligase family protein 0.58 0.32 -0.32
154 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.31 -0.29
155 AT1G63590 Receptor-like protein kinase-related family protein 0.58 0.31 -0.32