AT3G49240 : embryo defective 1796
Query Information
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AGICode AT3G49240
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G49240 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1796 1 0.31 -0.31
2 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 0.86 0.33 -0.31
3 AT3G58660 Ribosomal protein L1p/L10e family 0.86 0.33 -0.31
4 AT1G79490 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 2217 0.85 0.31 -0.31
5 AT4G25730 FtsJ-like methyltransferase family protein 0.85 0.32 -0.31
6 AT3G11964 RNA binding;RNA binding 0.85 0.3 -0.31
7 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.83 0.31 -0.31
8 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.83 0.35 -0.31
9 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.83 0.3 -0.31
10 AT4G04940 transducin family protein / WD-40 repeat family protein 0.83 0.33 -0.32
11 AT4G05410 Transducin/WD40 repeat-like superfamily protein YAOZHE 0.83 0.3 -0.31
12 AT1G03530 nuclear assembly factor 1 ATNAF1, nuclear assembly factor 1 0.82 0.32 -0.32
13 AT1G69070 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nop14-like protein (InterPro:IPR007276); Has 69842 Blast
hits to 35213 proteins in 1572 species: Archae - 363;
Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants -
2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI
BLink).		 0.82 0.3 -0.33
14 AT1G10490 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 0.82 0.3 -0.29
15 AT2G18900 Transducin/WD40 repeat-like superfamily protein 0.82 0.31 -0.33
16 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.82 0.29 -0.32
17 AT3G55510 Noc2p family REBELOTE 0.82 0.32 -0.32
18 AT1G48920 nucleolin like 1 nucleolin like 1, nucleolin like
1, PARALLEL 1		 0.81 0.3 -0.32
19 AT5G54910 DEA(D/H)-box RNA helicase family protein 0.81 0.31 -0.31
20 AT1G79150 binding 0.81 0.31 -0.31
21 AT3G16810 pumilio 24 pumilio 24, pumilio 24 0.81 0.31 -0.32
22 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase		 0.8 0.33 -0.3
23 AT1G30240 FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 21 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold
(InterPro:IPR016024); Has 165 Blast hits to 164 proteins in
73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi -
68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.8 0.31 -0.32
24 AT1G71850 Ubiquitin carboxyl-terminal hydrolase family protein 0.8 0.31 -0.33
25 AT1G13160 ARM repeat superfamily protein 0.8 0.31 -0.33
26 AT3G06530 ARM repeat superfamily protein 0.8 0.32 -0.31
27 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.8 0.31 -0.29
28 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.29 -0.29
29 AT2G17250 CCAAT-binding factor EMBRYO DEFECTIVE 2762 0.79 0.29 -0.31
30 AT4G26600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.79 0.32 -0.31
31 AT1G80180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G15400.3); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.31 -0.3
32 AT5G08620 DEA(D/H)-box RNA helicase family protein RNA HELICASE 25, STRESS RESPONSE
SUPPRESSOR 2		 0.79 0.3 -0.34
33 AT1G02370 Tetratricopeptide repeat (TPR)-like superfamily protein 0.79 0.32 -0.32
34 AT4G25340 FK506 BINDING PROTEIN 53 ATFKBP53, FK506 BINDING PROTEIN 53 0.78 0.34 -0.31
35 AT5G35910 Polynucleotidyl transferase, ribonuclease H fold protein
with HRDC domain		 0.78 0.33 -0.32
36 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative 0.78 0.32 -0.32
37 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain 0.78 0.31 -0.32
38 AT2G31240 Tetratricopeptide repeat (TPR)-like superfamily protein 0.78 0.32 -0.33
39 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.77 0.31 -0.33
40 AT4G12750 Homeodomain-like transcriptional regulator 0.77 0.31 -0.34
41 AT5G38720 unknown protein; Has 13419 Blast hits to 9093 proteins in
698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949;
Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes
- 5779 (source: NCBI BLink).		 0.77 0.32 -0.33
42 AT1G13030 sphere organelles protein-related 0.77 0.3 -0.33
43 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein 0.77 0.3 -0.31
44 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.76 0.33 -0.3
45 AT5G15550 Transducin/WD40 repeat-like superfamily protein 0.76 0.32 -0.3
46 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.76 0.31 -0.33
47 AT4G30990 ARM repeat superfamily protein 0.76 0.3 -0.33
48 AT3G07750 3'-5'-exoribonuclease family protein 0.76 0.32 -0.33
49 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.31 -0.32
50 AT4G24200 Transcription elongation factor (TFIIS) family protein 0.76 0.3 -0.31
51 AT5G20200 nucleoporin-related 0.75 0.31 -0.34
52 AT3G02760 Class II aaRS and biotin synthetases superfamily protein 0.75 0.32 -0.31
53 AT5G64420 DNA polymerase V family 0.75 0.3 -0.3
54 AT3G60340 alpha/beta-Hydrolases superfamily protein -0.75 0.3 -0.32
55 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 0.74 0.32 -0.33
56 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.74 0.32 -0.32
57 AT5G18440 CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental
retardation-interacting protein 1, conserved region
(InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins
in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339;
Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes -
619 (source: NCBI BLink).		 AtNUFIP, nuclear FMRP-interacting
protein		 0.74 0.3 -0.31
58 AT5G22320 Leucine-rich repeat (LRR) family protein 0.74 0.34 -0.3
59 AT5G09420 translocon at the outer membrane of chloroplasts 64-V AtmtOM64, translocon at the outer
membrane of chloroplasts 64-V,
ARABIDOPSIS THALIANA TRANSLOCON AT
THE OUTER MEMBRANE OF CHLOROPLASTS
64-V, outer membrane 64,
translocon at the outer membrane
of chloroplasts 64-V		 0.74 0.3 -0.31
60 AT3G24080 KRR1 family protein 0.74 0.31 -0.3
61 AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 0.73 0.31 -0.3
62 AT5G12200 pyrimidine 2 pyrimidine 2 -0.73 0.31 -0.32
63 AT5G17270 Protein prenylyltransferase superfamily protein 0.73 0.31 -0.33
64 AT1G69950 transposable element gene 0.73 0.3 -0.32
65 AT1G33390 RNA helicase family protein FASCIATED STEM 4, FASCIATED STEM 4 0.73 0.33 -0.31
66 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 0.73 0.3 -0.32
67 AT5G37680 ADP-ribosylation factor-like A1A ADP-ribosylation factor-like A1A,
ADP-ribosylation factor-like A1A		 -0.73 0.32 -0.32
68 AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.72 0.32 -0.3
69 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5		 0.72 0.31 -0.32
70 AT2G46030 ubiquitin-conjugating enzyme 6 ubiquitin-conjugating enzyme 6 -0.72 0.3 -0.33
71 AT4G14930 Survival protein SurE-like phosphatase/nucleotidase -0.72 0.32 -0.3
72 AT2G39000 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.72 0.3 -0.34
73 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.72 0.32 -0.33
74 AT5G12220 las1-like family protein 0.71 0.31 -0.29
75 AT5G09840 Putative endonuclease or glycosyl hydrolase 0.71 0.31 -0.31
76 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein -0.71 0.33 -0.31
77 AT1G71060 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.31 -0.34
78 AT5G15750 Alpha-L RNA-binding motif/Ribosomal protein S4 family
protein		 0.71 0.33 -0.3
79 AT5G28150 Plant protein of unknown function (DUF868) 0.71 0.32 -0.34
80 AT5G60030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.71 0.31 -0.31
81 AT5G46920 Intron maturase, type II family protein 0.71 0.33 -0.31
82 AT1G63800 ubiquitin-conjugating enzyme 5 ubiquitin-conjugating enzyme 5 -0.71 0.32 -0.35
83 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 -0.7 0.32 -0.32
84 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.7 0.33 -0.32
85 AT1G47330 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.7 0.32 -0.32
86 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.7 0.31 -0.32
87 AT5G12310 RING/U-box superfamily protein -0.7 0.31 -0.34
88 AT5G65760 Serine carboxypeptidase S28 family protein -0.69 0.33 -0.32
89 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.69 0.31 -0.32
90 AT2G44850 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0565
(InterPro:IPR018881); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45380.1); Has 138 Blast
hits to 138 proteins in 53 species: Archae - 0; Bacteria -
0; Metazoa - 73; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.69 0.32 -0.33
91 AT3G18295 Protein of unknown function (DUF1639) -0.69 0.3 -0.32
92 AT3G06850 2-oxoacid dehydrogenases acyltransferase family protein BCE2, DARK INDUCIBLE 3, LTA1 -0.68 0.35 -0.31
93 AT2G23780 RING/U-box superfamily protein -0.68 0.32 -0.3
94 AT1G33780 Protein of unknown function (DUF179) -0.68 0.35 -0.32
95 AT5G48810 cytochrome B5 isoform D ATB5-B, ARABIDOPSIS CYTOCHROME B5
ISOFORM D, B5 #3, cytochrome B5
isoform D		 -0.67 0.29 -0.32
96 AT3G02700 NC domain-containing protein-related -0.67 0.33 -0.32
97 AT3G02340 RING/U-box superfamily protein -0.66 0.32 -0.32
98 AT1G49740 PLC-like phosphodiesterases superfamily protein -0.65 0.3 -0.32
99 AT3G54480 SKP1/ASK-interacting protein 5 SKP1/ASK-interacting protein 5,
SKP5		 -0.65 0.34 -0.32
100 AT4G29420 F-box/RNI-like superfamily protein -0.65 0.29 -0.31
101 AT2G25280 CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of
ErbB2-driven cell motility (Memo), related
(InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins
in 474 species: Archae - 213; Bacteria - 366; Metazoa -
159; Fungi - 135; Plants - 54; Viruses - 0; Other
Eukaryotes - 147 (source: NCBI BLink).		 -0.65 0.32 -0.29
102 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.33 -0.31
103 AT3G61430 plasma membrane intrinsic protein 1A ARABIDOPSIS THALIANA PLASMA
MEMBRANE INTRINSIC PROTEIN 1,
PLASMA MEMBRANE INTRINSIC PROTEIN
1, PLASMA MEMBRANE INTRINSIC
PROTEIN 1;1, plasma membrane
intrinsic protein 1A		 -0.64 0.33 -0.31
104 AT1G56280 drought-induced 19 drought-induced 19,
drought-induced 19		 -0.64 0.31 -0.31
105 AT1G55000 peptidoglycan-binding LysM domain-containing protein -0.64 0.31 -0.31
106 AT1G06630 F-box/RNI-like superfamily protein -0.63 0.32 -0.32
107 AT1G13880 ELM2 domain-containing protein -0.63 0.3 -0.31
108 AT4G26980 RNI-like superfamily protein -0.63 0.32 -0.3
109 AT1G65000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits
to 49 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.32
110 AT5G14500 aldose 1-epimerase family protein -0.63 0.31 -0.33
111 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.62 0.32 -0.31
112 AT1G22040 Galactose oxidase/kelch repeat superfamily protein -0.62 0.32 -0.28
113 AT3G17770 Dihydroxyacetone kinase -0.62 0.32 -0.32
114 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 -0.62 0.3 -0.32
115 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 -0.61 0.33 -0.32
116 AT5G52120 phloem protein 2-A14 phloem protein 2-A14, phloem
protein 2-A14		 -0.6 0.31 -0.28
117 AT5G24890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.6 0.3 -0.31
118 AT5G67150 HXXXD-type acyl-transferase family protein -0.6 0.3 -0.32
119 AT3G44280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.3 -0.31
120 AT1G49480 related to vernalization1 1 related to vernalization1 1 -0.6 0.33 -0.3
121 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.6 0.33 -0.33
122 AT1G70290 trehalose-6-phosphatase synthase S8 ATTPS8, ATTPSC,
trehalose-6-phosphatase synthase
S8		 -0.6 0.32 -0.3
123 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.59 0.32 -0.35
124 AT2G36900 membrin 11 ATMEMB11, membrin 11 -0.59 0.29 -0.32
125 AT1G54850 HSP20-like chaperones superfamily protein -0.59 0.31 -0.3
126 AT5G55000 potassium channel tetramerisation domain-containing protein
/ pentapeptide repeat-containing protein		 FIP2 -0.59 0.28 -0.3
127 AT5G53830 VQ motif-containing protein -0.59 0.31 -0.32