AT3G48900 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G48900
Description single-stranded DNA endonuclease family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G48900 single-stranded DNA endonuclease family protein 1 0.31 -0.32
2 AT1G35380 transposable element gene -0.78 0.31 -0.32
3 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha 0.78 0.3 -0.32
4 AT3G66656 AGAMOUS-like 91 AGAMOUS-like 91 -0.77 0.35 -0.34
5 AT4G16920 Disease resistance protein (TIR-NBS-LRR class) family 0.76 0.33 -0.33
6 AT5G67100 DNA-directed DNA polymerases INCURVATA2 0.76 0.34 -0.31
7 AT5G37970 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.76 0.31 -0.32
8 AT5G45080 phloem protein 2-A6 phloem protein 2-A6, phloem
protein 2-A6		 0.75 0.3 -0.32
9 AT2G24070 Family of unknown function (DUF566) QWRF domain containing 4 0.74 0.32 -0.31
10 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 0.74 0.31 -0.3
11 AT3G43880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits
to 32 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.3 -0.31
12 AT1G26760 SET domain protein 35 ATXR1, SET domain protein 35 0.74 0.31 -0.32
13 AT3G43120 SAUR-like auxin-responsive protein family 0.74 0.32 -0.3
14 AT1G62940 acyl-CoA synthetase 5 acyl-CoA synthetase 5 0.73 0.32 -0.31
15 AT2G11090 transposable element gene 0.73 0.32 -0.28
16 AT5G12450 FBD-like domain family protein 0.72 0.32 -0.3
17 AT1G43260 hAT transposon superfamily protein 0.72 0.31 -0.31
18 AT3G01380 transferases;sulfuric ester
hydrolases;catalytics;transferases		 0.72 0.32 -0.3
19 AT3G55830 Nucleotide-diphospho-sugar transferases superfamily protein ECTOPICALLY PARTING CELLS -0.71 0.32 -0.29
20 AT4G16120 COBRA-like protein-7 precursor ARABIDOPSIS THALIANA SEC61 BETA 1,
COBRA-like protein-7 precursor,
SEC61 BETA 1		 0.71 0.3 -0.32
21 AT5G24560 phloem protein 2-B12 phloem protein 2-B12, phloem
protein 2-B12		 0.71 0.33 -0.31
22 AT5G54950 Aconitase family protein 0.71 0.3 -0.31
23 AT2G34980 phosphatidylinositolglycan synthase family protein SETH1 0.7 0.32 -0.3
24 AT5G01310 APRATAXIN-like APRATAXIN-like 0.7 0.31 -0.32
25 AT3G31920 transposable element gene 0.7 0.32 -0.31
26 AT4G14670 casein lytic proteinase B2 casein lytic proteinase B2 0.69 0.32 -0.33
27 AT3G51680 NAD(P)-binding Rossmann-fold superfamily protein AtSDR2, short-chain
dehydrogenase/reductase 2		 0.69 0.32 -0.3
28 AT4G15730 CW-type Zinc Finger 0.69 0.31 -0.31
29 AT1G70180 Sterile alpha motif (SAM) domain-containing protein 0.69 0.32 -0.32
30 AT1G28135 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 7 Blast hits to 7 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.69 0.36 -0.32
31 AT5G10120 Ethylene insensitive 3 family protein 0.69 0.31 -0.33
32 AT4G34850 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 5 0.69 0.3 -0.3
33 AT2G33460 ROP-interactive CRIB motif-containing protein 1 ROP-interactive CRIB
motif-containing protein 1		 0.69 0.3 -0.31
34 AT3G47460 Structural maintenance of chromosomes (SMC) family protein ATSMC2 0.69 0.32 -0.31
35 AT1G33410 SUPPRESSOR OF AUXIN RESISTANCE1 ARABIDOPSIS NUCLEOPORIN 160,
NUCLEOPORIN 160, SUPPRESSOR OF
AUXIN RESISTANCE1		 0.68 0.31 -0.3
36 AT3G42690 transposable element gene 0.68 0.32 -0.3
37 AT3G60570 expansin B5 expansin B5, ATHEXP BETA 1.3,
expansin B5		 0.68 0.33 -0.29
38 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.68 0.29 -0.34
39 AT2G01790 TRAF-like family protein 0.68 0.33 -0.3
40 AT2G23660 LOB domain-containing protein 10 LOB domain-containing protein 10 0.68 0.3 -0.33
41 AT5G57320 villin, putative villin 5 0.68 0.33 -0.34
42 AT5G65820 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.31 -0.31
43 AT3G26870 Plant self-incompatibility protein S1 family 0.68 0.31 -0.32
44 AT1G59535 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.67 0.3 -0.32
45 AT5G28170 transposable element gene 0.67 0.31 -0.31
46 AT2G40720 Tetratricopeptide repeat (TPR)-like superfamily protein 0.67 0.31 -0.33
47 AT5G30380 transposable element gene 0.67 0.3 -0.32
48 AT5G11290 Plant protein of unknown function (DUF247) 0.67 0.33 -0.32
49 AT2G05850 serine carboxypeptidase-like 38 serine carboxypeptidase-like 38 -0.67 0.32 -0.32
50 AT2G37160 Transducin/WD40 repeat-like superfamily protein 0.67 0.34 -0.31
51 AT5G03250 Phototropic-responsive NPH3 family protein 0.66 0.31 -0.3
52 AT1G47350 F-box associated ubiquitination effector family protein -0.66 0.31 -0.32
53 AT1G20135 GDSL-like Lipase/Acylhydrolase family protein 0.66 0.32 -0.3
54 AT4G34320 Protein of unknown function (DUF677) 0.66 0.29 -0.32
55 AT1G43570 transposable element gene 0.66 0.3 -0.31
56 AT1G01550 Protein of unknown function (DUF793) BYPASS 1 -0.66 0.29 -0.32
57 AT3G46960 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.66 0.3 -0.33
58 AT4G32700 helicases;ATP-dependent helicases;nucleic acid binding;ATP
binding;DNA-directed DNA polymerases;DNA binding		 TEBICHI 0.65 0.3 -0.29
59 AT2G41530 S-formylglutathione hydrolase ARABIDOPSIS THALIANA
S-FORMYLGLUTATHIONE HYDROLASE,
S-formylglutathione hydrolase		 -0.65 0.32 -0.32
60 AT4G20770 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.32 -0.32
61 AT1G56610 Protein with RNI-like/FBD-like domains -0.65 0.34 -0.31
62 AT3G16380 poly(A) binding protein 6 poly(A) binding protein 6 0.65 0.31 -0.31
63 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 0.65 0.32 -0.32
64 AT5G40360 myb domain protein 115 myb domain protein 115, myb domain
protein 115		 0.64 0.28 -0.33
65 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.64 0.33 -0.31
66 AT2G40680 transposable element gene 0.64 0.31 -0.31
67 AT2G33240 myosin XI D MYOSIN XI D, myosin XI D -0.64 0.29 -0.29
68 AT5G49260 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.32 -0.31
69 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein 0.64 0.3 -0.31
70 AT3G24460 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 0.64 0.32 -0.32
71 AT5G55650 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.32 -0.3
72 AT1G53940 GDSL-motif lipase 2 GDSL-motif lipase 2 0.64 0.29 -0.33
73 AT4G27470 RING membrane-anchor 3 ATRMA3, RING membrane-anchor 3 -0.64 0.32 -0.32
74 AT3G20190 Leucine-rich repeat protein kinase family protein -0.64 0.33 -0.34
75 AT5G52770 Copper transport protein family 0.64 0.34 -0.29
76 AT5G60090 Protein kinase superfamily protein 0.64 0.31 -0.32
77 AT1G75430 BEL1-like homeodomain 11 BEL1-like homeodomain 11 0.64 0.29 -0.32
78 AT5G27170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1807 Blast hits to 1807 proteins in 277
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi -
347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.33 -0.31
79 AT3G05260 NAD(P)-binding Rossmann-fold superfamily protein -0.64 0.33 -0.31
80 AT5G26120 alpha-L-arabinofuranosidase 2 alpha-L-arabinofuranosidase 2,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 2		 -0.64 0.33 -0.32
81 AT1G15590 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.63 0.29 -0.32
82 AT1G64280 regulatory protein (NPR1) ARABIDOPSIS NONEXPRESSER OF PR
GENES 1, NON-INDUCIBLE IMMUNITY 1,
NONEXPRESSER OF PR GENES 1,
SALICYLIC ACID INSENSITIVE 1		 -0.63 0.32 -0.3
83 AT1G47680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G47700.1); Has 3 Blast
hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.3
84 AT5G51320 transposable element gene -0.63 0.3 -0.33
85 AT3G06050 peroxiredoxin IIF PEROXIREDOXIN IIF, peroxiredoxin
IIF		 -0.63 0.35 -0.32
86 AT4G07920 transposable element gene -0.63 0.31 -0.32
87 AT3G42730 transposable element gene -0.63 0.31 -0.31
88 AT3G61530 Phosphoenolpyruvate carboxylase family protein PANB2 -0.63 0.32 -0.31
89 AT1G65020 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endoplasmic
reticulum, plasma membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast
hits to 69 proteins in 27 species: Archae - 0; Bacteria -
18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.62 0.32 -0.34
90 AT1G18290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.62 0.3 -0.3
91 AT2G39530 Uncharacterised protein family (UPF0497) -0.62 0.33 -0.35
92 AT5G52690 Copper transport protein family -0.61 0.3 -0.31
93 AT3G56600 Protein kinase superfamily protein -0.61 0.33 -0.33
94 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 -0.61 0.3 -0.31
95 AT4G07540 transposable element gene -0.61 0.33 -0.31
96 AT1G26860 transposable element gene -0.61 0.34 -0.32
97 AT4G02190 Cysteine/Histidine-rich C1 domain family protein -0.61 0.33 -0.31
98 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.31 -0.3
99 AT4G27120 CONTAINS InterPro DOMAIN/s: DDRGK domain
(InterPro:IPR019153); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.6 0.3 -0.33
100 AT3G57700 Protein kinase superfamily protein -0.6 0.32 -0.31
101 AT3G28770 Protein of unknown function (DUF1216) -0.6 0.32 -0.31
102 AT3G15890 Protein kinase superfamily protein -0.6 0.31 -0.3
103 AT5G28620 protein kinase C-related -0.59 0.33 -0.31
104 AT3G01240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01230.1); Has 12 Blast hits to 12 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.59 0.31 -0.34
105 AT1G13610 alpha/beta-Hydrolases superfamily protein -0.59 0.34 -0.3
106 AT3G07930 DNA glycosylase superfamily protein -0.58 0.3 -0.32
107 AT3G43500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G42080.1); Has 8 Blast hits to
8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.32 -0.31
108 AT1G33860 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.58 0.3 -0.29
109 AT3G29300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; Has 451 Blast hits to
349 proteins in 91 species: Archae - 0; Bacteria - 85;
Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1; Other
Eukaryotes - 178 (source: NCBI BLink).		 -0.58 0.32 -0.3
110 AT3G32090 WRKY family transcription factor -0.58 0.32 -0.31
111 AT5G48670 AGAMOUS-like 80 AGAMOUS-like 80, FEM111 -0.58 0.31 -0.33
112 AT5G11940 Subtilase family protein -0.57 0.3 -0.32
113 AT4G13230 Late embryogenesis abundant protein (LEA) family protein -0.57 0.31 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
114 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.7 0.47 -0.44 C0027
115 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.68 0.45 -0.48
116 C0115 Homoserine D,L-Homoserine Homoserine homoserine biosynthesis,
threonine biosynthesis from homoserine,
methionine biosynthesis II 		-0.58 0.31 -0.29 C0115