AT3G46560 : embryo defective 2474
Query Information
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AGICode AT3G46560
Description Tim10/DDP family zinc finger protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 1 0.3 -0.31
2 AT4G28450 nucleotide binding;protein binding 0.87 0.31 -0.31
3 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 0.87 0.31 -0.32
4 AT2G20940 Protein of unknown function (DUF1279) 0.86 0.32 -0.31
5 AT3G55605 Mitochondrial glycoprotein family protein 0.86 0.34 -0.31
6 AT1G61570 translocase of the inner mitochondrial membrane 13 translocase of the inner
mitochondrial membrane 13		 0.85 0.31 -0.3
7 AT4G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.31 -0.32
8 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.84 0.32 -0.32
9 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.84 0.3 -0.3
10 AT1G53645 hydroxyproline-rich glycoprotein family protein 0.84 0.32 -0.3
11 AT5G02050 Mitochondrial glycoprotein family protein 0.84 0.29 -0.31
12 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.84 0.31 -0.35
13 AT4G20020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast
hits to 16023 proteins in 1033 species: Archae - 4;
Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants -
3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI
BLink).		 0.84 0.32 -0.31
14 AT5G53770 Nucleotidyltransferase family protein 0.83 0.29 -0.32
15 AT2G35790 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1301 (InterPro:IPR009724); Has 116
Blast hits to 116 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.83 0.34 -0.3
16 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.83 0.33 -0.3
17 AT1G30580 GTP binding 0.83 0.29 -0.31
18 AT4G15770 RNA binding 0.83 0.32 -0.33
19 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.83 0.28 -0.3
20 AT3G01790 Ribosomal protein L13 family protein 0.83 0.31 -0.32
21 AT1G75670 DNA-directed RNA polymerases 0.82 0.3 -0.33
22 AT2G40420 Transmembrane amino acid transporter family protein -0.82 0.31 -0.33
23 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.82 0.31 -0.31
24 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.82 0.31 -0.29
25 AT3G02190 Ribosomal protein L39 family protein 0.82 0.29 -0.3
26 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.82 0.32 -0.3
27 AT2G23930 probable small nuclear ribonucleoprotein G probable small nuclear
ribonucleoprotein G		 0.82 0.33 -0.33
28 AT5G06360 Ribosomal protein S8e family protein 0.81 0.31 -0.32
29 AT1G52930 Ribosomal RNA processing Brix domain protein 0.81 0.32 -0.3
30 AT1G73180 Eukaryotic translation initiation factor eIF2A family
protein		 0.81 0.32 -0.31
31 AT2G44860 Ribosomal protein L24e family protein 0.81 0.3 -0.31
32 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.81 0.31 -0.31
33 AT3G13860 heat shock protein 60-3A heat shock protein 60-3A 0.81 0.31 -0.32
34 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.81 0.31 -0.33
35 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.81 0.32 -0.31
36 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.81 0.32 -0.31
37 AT5G02450 Ribosomal protein L36e family protein 0.81 0.31 -0.3
38 AT5G06550 CONTAINS InterPro DOMAIN/s: Transcription factor
jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347),
F-box domain, Skp2-like (InterPro:IPR022364), Transcription
factor jumonji (InterPro:IPR013129); BEST Arabidopsis
thaliana protein match is: transferases, transferring
glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to
1747 proteins in 292 species: Archae - 0; Bacteria - 297;
Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0;
Other Eukaryotes - 199 (source: NCBI BLink).		 0.81 0.32 -0.32
39 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.81 0.32 -0.33
40 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.8 0.31 -0.34
41 AT2G44270 repressor of lrx1 repressor of lrx1 0.8 0.31 -0.3
42 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.8 0.31 -0.33
43 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.8 0.32 -0.3
44 AT5G40530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.8 0.33 -0.31
45 AT4G36020 cold shock domain protein 1 cold shock domain protein 1 0.8 0.33 -0.33
46 AT3G03600 ribosomal protein S2 ribosomal protein S2 0.8 0.33 -0.31
47 AT2G15000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast
hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.8 0.31 -0.3
48 AT4G23540 ARM repeat superfamily protein 0.8 0.33 -0.33
49 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.79 0.31 -0.33
50 AT1G19715 Mannose-binding lectin superfamily protein -0.79 0.33 -0.31
51 AT4G15850 RNA helicase 1 RNA helicase 1, RNA helicase 1 0.79 0.3 -0.32
52 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.79 0.34 -0.31
53 AT4G26780 Co-chaperone GrpE family protein AR192, mitochondrial GrpE 2 0.79 0.31 -0.31
54 AT2G44510 CDK inhibitor P21 binding protein 0.79 0.28 -0.31
55 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.79 0.3 -0.32
56 AT5G22840 Protein kinase superfamily protein 0.79 0.32 -0.3
57 AT1G26740 Ribosomal L32p protein family 0.79 0.33 -0.31
58 AT1G74270 Ribosomal protein L35Ae family protein 0.79 0.3 -0.29
59 AT3G05810 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: IGR protein
motif (InterPro:IPR019083); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G26800.1); Has
62 Blast hits to 62 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.79 0.33 -0.32
60 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 0.79 0.3 -0.34
61 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.78 0.31 -0.32
62 AT2G39795 Mitochondrial glycoprotein family protein 0.78 0.33 -0.29
63 AT5G09270 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.78 0.33 -0.3
64 AT3G56070 rotamase cyclophilin 2 rotamase cyclophilin 2 0.78 0.32 -0.34
65 AT1G79550 phosphoglycerate kinase phosphoglycerate kinase 0.78 0.33 -0.33
66 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 0.78 0.32 -0.31
67 AT1G14300 ARM repeat superfamily protein 0.78 0.32 -0.31
68 AT1G71730 unknown protein; Has 52 Blast hits to 52 proteins in 24
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 0.78 0.3 -0.33
69 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.78 0.31 -0.32
70 AT1G61770 Chaperone DnaJ-domain superfamily protein 0.78 0.32 -0.29
71 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.78 0.35 -0.32
72 AT3G13940 DNA binding;DNA-directed RNA polymerases 0.77 0.32 -0.29
73 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.77 0.31 -0.31
74 AT5G05520 Outer membrane OMP85 family protein 0.77 0.31 -0.3
75 AT4G01660 ABC transporter 1 ABC transporter 1, ABC transporter
1, ATATH10		 0.77 0.31 -0.33
76 AT1G79390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.77 0.32 -0.31
77 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.77 0.31 -0.32
78 AT1G15740 Leucine-rich repeat family protein -0.77 0.3 -0.31
79 AT4G05440 temperature sensing protein-related embryo sac development arrest 35 0.77 0.32 -0.31
80 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 0.77 0.31 -0.33
81 AT2G32220 Ribosomal L27e protein family 0.77 0.31 -0.32
82 AT1G73920 alpha/beta-Hydrolases superfamily protein -0.77 0.29 -0.33
83 AT2G40010 Ribosomal protein L10 family protein 0.77 0.32 -0.3
84 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.77 0.31 -0.3
85 AT2G47420 Ribosomal RNA adenine dimethylase family protein adenosine dimethyl transferase 1A 0.77 0.31 -0.34
86 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 0.77 0.33 -0.31
87 AT4G29480 Mitochondrial ATP synthase subunit G protein 0.76 0.32 -0.32
88 AT1G14060 GCK domain-containing protein 0.76 0.31 -0.32
89 AT2G33210 heat shock protein 60-2 heat shock protein 60-2 0.76 0.3 -0.31
90 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.76 0.31 -0.29
91 AT1G62730 Terpenoid synthases superfamily protein 0.76 0.34 -0.32
92 AT3G49320 Metal-dependent protein hydrolase 0.76 0.3 -0.31
93 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.75 0.3 -0.32
94 AT3G19620 Glycosyl hydrolase family protein -0.74 0.31 -0.34
95 AT1G80310 sulfate transmembrane transporters molybdate transporter 2 -0.74 0.3 -0.32
96 AT1G19835 Plant protein of unknown function (DUF869) -0.73 0.31 -0.3
97 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.32 -0.31
98 AT1G76110 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 -0.7 0.34 -0.31
99 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.69 0.34 -0.32
100 AT3G56050 Protein kinase family protein -0.68 0.31 -0.32
101 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.68 0.32 -0.29
102 AT1G72650 TRF-like 6 TRF-like 6 -0.67 0.31 -0.29
103 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.33 -0.31
104 AT5G16490 ROP-interactive CRIB motif-containing protein 4 ROP-interactive CRIB
motif-containing protein 4		 -0.66 0.32 -0.31
105 AT4G02630 Protein kinase superfamily protein -0.66 0.33 -0.33
106 AT4G24740 FUS3-complementing gene 2 FUS3-complementing gene 2, AME1,
FUS3-complementing gene 2		 -0.64 0.3 -0.31
107 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.31 -0.3
108 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.32 -0.31
109 AT4G01280 Homeodomain-like superfamily protein -0.63 0.32 -0.33
110 AT2G01400 unknown protein; Has 19 Blast hits to 19 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.3 -0.29
111 AT5G52880 F-box family protein -0.63 0.32 -0.33
112 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.63 0.31 -0.33
113 AT1G57870 shaggy-like kinase 42 shaggy-like kinase 42, shaggy-like
kinase 42		 -0.63 0.32 -0.32
114 AT1G67530 ARM repeat superfamily protein -0.61 0.3 -0.31
115 AT2G48110 reduced epidermal fluorescence 4 MED33B, REDUCED EPIDERMAL
FLUORESCENCE 4		 -0.61 0.32 -0.32
116 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.6 0.31 -0.3
117 AT2G25200 Plant protein of unknown function (DUF868) -0.6 0.33 -0.32
118 AT3G49880 glycosyl hydrolase family protein 43 -0.6 0.34 -0.32
119 AT3G09410 Pectinacetylesterase family protein -0.6 0.31 -0.3