AT3G46060 : ARA-3
Query Information
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AGICode AT3G46060
Description RAB GTPase homolog 8A
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G46060 RAB GTPase homolog 8A ARA-3, ARA3, RAB GTPase homolog
8A, ATRABE1C, RAB GTPase homolog
8A, RABE1c		 1 0.32 -0.31
2 AT4G31340 myosin heavy chain-related 0.86 0.3 -0.32
3 AT3G05530 regulatory particle triple-A ATPase 5A ATS6A.2, regulatory particle
triple-A ATPase 5A		 0.86 0.32 -0.31
4 AT4G31300 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBA1 0.84 0.3 -0.31
5 AT1G20200 PAM domain (PCI/PINT associated module) protein EMBRYO DEFECTIVE 2719, HAPLESS 15 0.82 0.31 -0.33
6 AT1G36050 Endoplasmic reticulum vesicle transporter protein 0.82 0.3 -0.29
7 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.82 0.32 -0.31
8 AT5G13780 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.81 0.33 -0.32
9 AT5G58290 regulatory particle triple-A ATPase 3 regulatory particle triple-A
ATPase 3		 0.8 0.33 -0.32
10 AT4G39820 Tetratricopeptide repeat (TPR)-like superfamily protein 0.8 0.31 -0.28
11 AT1G47640 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2053, membrane
(InterPro:IPR019164); Has 204 Blast hits to 204 proteins in
84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi
- 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27
(source: NCBI BLink).		 0.8 0.29 -0.31
12 AT2G45070 Preprotein translocase Sec, Sec61-beta subunit protein SUPPRESSORS OF SECRETION-DEFECTIVE
61 BETA		 0.79 0.31 -0.34
13 AT2G27020 20S proteasome alpha subunit G1 20S proteasome alpha subunit G1 0.79 0.34 -0.3
14 AT5G15640 Mitochondrial substrate carrier family protein 0.79 0.3 -0.3
15 AT1G29310 SecY protein transport family protein 0.79 0.31 -0.3
16 AT3G22290 Endoplasmic reticulum vesicle transporter protein 0.78 0.32 -0.32
17 AT2G36300 Integral membrane Yip1 family protein 0.78 0.32 -0.3
18 AT1G04750 vesicle-associated membrane protein 721 AT VAMP7B, ATVAMP721,
vesicle-associated membrane
protein 721, VESICLE-ASSOCIATED
MEMBRANE PROTEIN 7B		 0.77 0.31 -0.32
19 AT1G30890 Integral membrane HRF1 family protein 0.77 0.31 -0.34
20 AT3G52560 ubiquitin E2 variant 1D-4 MMS2 ZWEI HOMOLOGUE 4, UBIQUITIN
E2 VARIANT 1D, ubiquitin E2
variant 1D-4		 0.77 0.32 -0.32
21 AT3G04780 Protein of unknown function (DUF1000) 0.77 0.32 -0.3
22 AT4G38630 regulatory particle non-ATPase 10 ATMCB1, MULTIUBIQUITIN CHAIN
BINDING PROTEIN 1,
MULTIUBIQUITIN-CHAIN-BINDING
PROTEIN 1, regulatory particle
non-ATPase 10		 0.77 0.32 -0.34
23 AT2G20760 Clathrin light chain protein 0.77 0.31 -0.31
24 AT1G07240 UDP-glucosyl transferase 71C5 UDP-glucosyl transferase 71C5 0.77 0.3 -0.31
25 AT1G09210 calreticulin 1b AtCRT1b, calreticulin 1b 0.76 0.31 -0.31
26 AT1G27970 nuclear transport factor 2B nuclear transport factor 2B 0.76 0.3 -0.33
27 AT3G18940 clast3-related 0.76 0.32 -0.29
28 AT4G14800 20S proteasome beta subunit D2 20S proteasome beta subunit D2 0.76 0.31 -0.32
29 AT5G50850 Transketolase family protein MACCI-BOU 0.76 0.33 -0.34
30 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 0.75 0.29 -0.3
31 AT2G37300 unknown protein; Has 93 Blast hits to 62 proteins in 29
species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi -
19; Plants - 25; Viruses - 0; Other Eukaryotes - 30
(source: NCBI BLink).		 ATP-binding cassette I16 -0.75 0.33 -0.32
32 AT4G24820 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 0.75 0.32 -0.32
33 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 0.75 0.3 -0.29
34 AT4G36280 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.75 0.32 -0.32
35 AT1G75460 ATP-dependent protease La (LON) domain protein -0.75 0.31 -0.31
36 AT3G14290 20S proteasome alpha subunit E2 20S proteasome alpha subunit E2 0.75 0.32 -0.32
37 AT3G60600 vesicle associated protein (AT)VAP, vesicle associated
protein, VAP27,
VAMP/SYNAPTOBREVIN-ASSOCIATED
PROTEIN 27-1		 0.75 0.33 -0.34
38 AT3G51260 20S proteasome alpha subunit PAD1 20S proteasome alpha subunit PAD1 0.74 0.33 -0.3
39 AT5G23540 Mov34/MPN/PAD-1 family protein 0.74 0.32 -0.34
40 AT1G11410 S-locus lectin protein kinase family protein -0.74 0.31 -0.33
41 AT4G12590 Protein of unknown function DUF106, transmembrane 0.74 0.31 -0.32
42 AT4G03120 C2H2 and C2HC zinc fingers superfamily protein 0.74 0.32 -0.32
43 AT5G17770 NADH:cytochrome B5 reductase 1 NADH:cytochrome B5 reductase 1,
NADH:cytochrome B5 reductase 1,
NADH:CYTOCHROME B5 REDUCTASE 1		 0.74 0.31 -0.32
44 AT4G31080 Protein of unknown function (DUF2296) 0.74 0.3 -0.29
45 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 -0.73 0.3 -0.33
46 AT2G38360 prenylated RAB acceptor 1.B4 prenylated RAB acceptor 1.B4 0.73 0.32 -0.32
47 AT1G28680 HXXXD-type acyl-transferase family protein 0.73 0.33 -0.31
48 AT3G51580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to
1607 proteins in 294 species: Archae - 2; Bacteria - 552;
Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38;
Other Eukaryotes - 253 (source: NCBI BLink).		 0.73 0.35 -0.31
49 AT3G60450 Phosphoglycerate mutase family protein 0.73 0.31 -0.31
50 AT3G05500 Rubber elongation factor protein (REF) 0.73 0.33 -0.33
51 AT3G51100 unknown protein; Has 48 Blast hits to 48 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.31 -0.33
52 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 0.73 0.31 -0.32
53 AT1G71940 SNARE associated Golgi protein family 0.73 0.31 -0.32
54 AT2G47970 Nuclear pore localisation protein NPL4 0.73 0.33 -0.29
55 AT1G07210 Ribosomal protein S18 0.73 0.31 -0.31
56 AT3G59920 RAB GDP dissociation inhibitor 2 RAB GDP dissociation inhibitor 2,
RAB GDP dissociation inhibitor 2		 0.73 0.33 -0.31
57 AT3G09840 cell division cycle 48 ATCDC48, cell division cycle 48,
CDC48A		 0.72 0.3 -0.31
58 AT1G64520 regulatory particle non-ATPase 12A regulatory particle non-ATPase 12A 0.72 0.32 -0.3
59 AT1G18480 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP2, Shewenella-like protein
phosphatase 2		 0.72 0.32 -0.32
60 AT1G03070 Bax inhibitor-1 family protein -0.72 0.32 -0.32
61 AT5G61240 Leucine-rich repeat (LRR) family protein 0.72 0.33 -0.31
62 AT2G36310 uridine-ribohydrolase 1 nucleoside hydrolase 1,
uridine-ribohydrolase 1		 0.72 0.32 -0.31
63 AT5G58060 SNARE-like superfamily protein ATGP1, ATYKT61, YKT61 0.72 0.31 -0.31
64 AT3G46590 TRF-like 1 ATTRP2, TRF-like 1, TRP2 -0.72 0.32 -0.34
65 AT3G12030 Protein of unknown function DUF106, transmembrane 0.72 0.32 -0.29
66 AT4G37550 Acetamidase/Formamidase family protein -0.71 0.32 -0.34
67 AT1G07030 Mitochondrial substrate carrier family protein 0.71 0.32 -0.33
68 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.32 -0.32
69 AT4G39390 nucleotide sugar transporter-KT 1 A. THALIANA NUCLEOTIDE SUGAR
TRANSPORTER-KT 1, nucleotide sugar
transporter-KT 1		 0.71 0.33 -0.29
70 AT4G34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein,
putative / gamma-2 COP, putative		 0.71 0.31 -0.33
71 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.71 0.32 -0.34
72 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 0.71 0.32 -0.33
73 AT1G49180 protein kinase family protein -0.71 0.31 -0.31
74 AT5G60640 PDI-like 1-4 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 2, PDI-like
1-4, PROTEIN DISULFIDE ISOMERASE
2, PDI-like 1-4		 0.71 0.34 -0.3
75 AT3G03950 evolutionarily conserved C-terminal region 1 evolutionarily conserved
C-terminal region 1		 0.71 0.34 -0.33
76 AT4G39220 Rer1 family protein ATRER1A 0.71 0.3 -0.3
77 AT2G26990 proteasome family protein ATCSN2, CONSTITUTIVE
PHOTOMORPHOGENIC 12, CSN2, FUSCA
12		 0.71 0.33 -0.29
78 AT2G34020 Calcium-binding EF-hand family protein 0.71 0.3 -0.33
79 AT1G53850 20S proteasome alpha subunit E1 ARABIDOPSIS 20S PROTEASOME ALPHA
SUBUNIT E1, 20S proteasome alpha
subunit E1		 0.7 0.33 -0.31
80 AT4G31080 Protein of unknown function (DUF2296) 0.7 0.31 -0.29
81 AT5G54980 Uncharacterised protein family (UPF0497) -0.7 0.32 -0.31
82 AT2G30260 U2 small nuclear ribonucleoprotein B U2 small nuclear ribonucleoprotein
B		 0.7 0.31 -0.3
83 AT5G10780 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP017207, transmembrane protein 85
(InterPro:IPR016687), Protein of unknown function DUF1077
(InterPro:IPR009445); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.7 0.31 -0.32
84 AT5G18110 novel cap-binding protein novel cap-binding protein 0.7 0.31 -0.31
85 AT1G78300 general regulatory factor 2 14-3-3 PROTEIN G-BOX FACTOR14
OMEGA, GF14 OMEGA, general
regulatory factor 2		 0.7 0.32 -0.33
86 AT5G63400 adenylate kinase 1 adenylate kinase 1 0.7 0.32 -0.32
87 AT1G69570 Dof-type zinc finger DNA-binding family protein 0.7 0.33 -0.34
88 ATCG00080 photosystem II reaction center protein I photosystem II reaction center
protein I		 -0.7 0.33 -0.33
89 AT5G54750 Transport protein particle (TRAPP) component 0.7 0.3 -0.32
90 ATCG00050 ribosomal protein S16 ribosomal protein S16 -0.69 0.34 -0.34
91 AT5G44660 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits
to 462 proteins in 141 species: Archae - 2; Bacteria - 370;
Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other
Eukaryotes - 239 (source: NCBI BLink).		 -0.69 0.32 -0.33
92 AT5G56850 unknown protein; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.69 0.32 -0.31
93 AT1G71810 Protein kinase superfamily protein -0.68 0.31 -0.32
94 AT5G25630 Tetratricopeptide repeat (TPR)-like superfamily protein -0.68 0.3 -0.32
95 AT4G34560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits
to 66 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.31
96 AT2G23200 Protein kinase superfamily protein -0.67 0.32 -0.32
97 AT3G57190 peptide chain release factor, putative peptide chain release factor 3 -0.67 0.31 -0.32
98 AT2G45590 Protein kinase superfamily protein -0.66 0.32 -0.31
99 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.66 0.31 -0.32
100 AT4G17360 Formyl transferase -0.66 0.3 -0.33
101 AT4G13450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.65 0.33 -0.32
102 AT5G06530 ABC-2 type transporter family protein ATP-binding cassette G22,
Arabidopsis thaliana ATP-binding
cassette G22		 -0.65 0.29 -0.31
103 AT3G11560 LETM1-like protein -0.65 0.34 -0.33
104 AT5G46880 homeobox-7 homeobox-7, HOMEODOMAIN GLABROUS 5 -0.65 0.3 -0.32
105 AT1G13650 BEST Arabidopsis thaliana protein match is: 18S
pre-ribosomal assembly protein gar2-related
(TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in
255 species: Archae - 22; Bacteria - 222; Metazoa - 684;
Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes -
2392 (source: NCBI BLink).		 -0.65 0.31 -0.33
106 AT2G29300 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.33 -0.3
107 AT5G25470 AP2/B3-like transcriptional factor family protein -0.65 0.29 -0.33
108 AT3G26350 LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel,
carpel, stamen; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Late embryogenesis abundant protein, group 2
(InterPro:IPR004864); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3534
Blast hits to 2704 proteins in 342 species: Archae - 6;
Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162;
Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).		 -0.65 0.31 -0.31
109 AT2G45620 Nucleotidyltransferase family protein -0.65 0.32 -0.3
110 ATCG00070 photosystem II reaction center protein K precursor photosystem II reaction center
protein K precursor		 -0.64 0.32 -0.31
111 AT3G03300 dicer-like 2 DICER-LIKE 2, dicer-like 2 -0.64 0.31 -0.31
112 AT2G17970 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.31 -0.34
113 AT1G67050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits
to 318 proteins in 80 species: Archae - 0; Bacteria - 16;
Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other
Eukaryotes - 268 (source: NCBI BLink).		 -0.64 0.33 -0.29
114 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 -0.64 0.32 -0.3
115 AT3G45420 Concanavalin A-like lectin protein kinase family protein -0.63 0.33 -0.32
116 AT1G01310 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.63 0.33 -0.32
117 AT5G50770 hydroxysteroid dehydrogenase 6 hydroxysteroid dehydrogenase 6,
hydroxysteroid dehydrogenase 6		 -0.62 0.3 -0.31
118 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.29 -0.29
119 AT4G34240 aldehyde dehydrogenase 3I1 aldehyde dehydrogenase 3, aldehyde
dehydrogenase 3I1		 -0.62 0.32 -0.32
120 AT3G05750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G26910.1); Has 2317
Blast hits to 1467 proteins in 247 species: Archae - 4;
Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180;
Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).		 -0.62 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
121 C0263 UMP - UMP pyrimidine salvage pathway,
dolichyl-diphosphooligosaccharide biosynthesis,
lipid IVA biosynthesis,
uridine-5'-phosphate biosynthesis,
pyrimidine ribonucleotides interconversion 		-0.87 0.43 -0.44 C0263
122 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.75 0.48 -0.46 C0131
123 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate 0.75 0.42 -0.44 C0136
124 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis -0.68 0.45 -0.46 C0193