AT4G39910 : ubiquitin-specific protease 3
Query Information
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AGICode AT4G39910
Description ubiquitin-specific protease 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G39910 ubiquitin-specific protease 3 ubiquitin-specific protease 3,
ubiquitin-specific protease 3		 1 0.3 -0.31
2 AT5G05850 plant intracellular ras group-related LRR 1 plant intracellular ras
group-related LRR 1		 0.81 0.31 -0.3
3 AT1G02750 Drought-responsive family protein 0.81 0.32 -0.34
4 AT1G05950 unknown protein; Has 50 Blast hits to 45 proteins in 14
species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.8 0.33 -0.31
5 AT1G18210 Calcium-binding EF-hand family protein 0.77 0.31 -0.31
6 AT5G42980 thioredoxin 3 thioredoxin H-type 3, thioredoxin
3, ATTRXH3, thioredoxin 3,
THIOREDOXIN H3		 0.76 0.3 -0.31
7 AT2G35635 ubiquitin 7 RELATED TO UBIQUITIN 2, ubiquitin
7		 0.76 0.32 -0.33
8 AT1G49520 SWIB complex BAF60b domain-containing protein 0.76 0.31 -0.33
9 AT3G57480 zinc finger (C2H2 type, AN1-like) family protein 0.75 0.3 -0.3
10 AT1G15880 golgi snare 11 atgos11, golgi snare 11 0.75 0.31 -0.32
11 AT3G51480 glutamate receptor 3.6 glutamate receptor 3.6, GLR3.6,
glutamate receptor 3.6		 -0.75 0.32 -0.32
12 AT4G39090 Papain family cysteine protease RESPONSIVE TO DEHYDRATION 19,
RESPONSIVE TO DEHYDRATION 19A		 0.74 0.31 -0.32
13 AT3G10800 Basic-leucine zipper (bZIP) transcription factor family
protein		 BZIP28 0.74 0.3 -0.34
14 AT2G15270 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1168 (InterPro:IPR009548); Has 1930
Blast hits to 1364 proteins in 219 species: Archae - 0;
Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96;
Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).		 0.74 0.32 -0.31
15 AT3G03690 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 unfertilized embryo sac 7 -0.74 0.32 -0.34
16 AT2G19200 unknown protein -0.73 0.3 -0.33
17 AT2G35730 Heavy metal transport/detoxification superfamily protein 0.73 0.32 -0.31
18 AT4G29750 CRS1 / YhbY (CRM) domain-containing protein -0.73 0.32 -0.31
19 AT1G08770 prenylated RAB acceptor 1.E prenylated RAB acceptor 1.E 0.73 0.32 -0.34
20 AT2G10970 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.73 0.32 -0.29
21 AT1G18510 tetraspanin 16 tetraspanin 16 -0.73 0.33 -0.32
22 AT4G21450 PapD-like superfamily protein 0.73 0.32 -0.31
23 AT1G01230 ORMDL family protein 0.72 0.32 -0.3
24 AT4G13790 SAUR-like auxin-responsive protein family 0.72 0.33 -0.34
25 AT1G35670 calcium-dependent protein kinase 2 calcium-dependent protein kinase
2, ATCPK11, calcium-dependent
protein kinase 2, CPK11		 0.72 0.3 -0.31
26 AT3G19950 RING/U-box superfamily protein 0.72 0.33 -0.32
27 AT5G62910 RING/U-box superfamily protein 0.72 0.34 -0.32
28 AT3G17710 F-box and associated interaction domains-containing protein 0.72 0.29 -0.32
29 AT3G59380 farnesyltransferase A FARNESYLTRANSFERASE A,
farnesyltransferase A,
PFT/PGGT-IALPHA, PLURIPETALA		 0.72 0.32 -0.32
30 AT5G63610 cyclin-dependent kinase E;1 ATCDK8, cyclin-dependent kinase
E;1, HUA ENHANCER 3		 0.72 0.31 -0.32
31 AT1G26270 Phosphatidylinositol 3- and 4-kinase family protein 0.72 0.31 -0.3
32 AT5G53020 Ribonuclease P protein subunit P38-related -0.72 0.3 -0.32
33 AT2G27420 Cysteine proteinases superfamily protein -0.72 0.3 -0.32
34 AT2G28310 Protein of unknown function (DUF707) -0.71 0.3 -0.33
35 AT3G10985 senescence associated gene 20 ARABIDOPSIS THALIANA WOUND-INDUCED
PROTEIN 12, senescence associated
gene 20, WOUND-INDUCED PROTEIN 12		 0.71 0.33 -0.31
36 AT3G04880 DNA-damage-repair/toleration protein (DRT102) DNA-DAMAGE-REPAIR/TOLERATION 2 0.71 0.3 -0.32
37 AT1G45976 S-ribonuclease binding protein 1 S-ribonuclease binding protein 1 0.71 0.32 -0.31
38 AT2G18750 Calmodulin-binding protein 0.71 0.31 -0.33
39 AT5G17640 Protein of unknown function (DUF1005) 0.7 0.33 -0.32
40 AT3G24315 Sec20 family protein AtSec20 0.7 0.3 -0.3
41 AT1G03780 targeting protein for XKLP2 AtTPX2, targeting protein for
XKLP2		 -0.7 0.33 -0.32
42 AT4G22120 ERD (early-responsive to dehydration stress) family protein -0.7 0.32 -0.32
43 AT5G13570 decapping 2 ATDCP2, decapping 2, TRIDENT 0.7 0.32 -0.3
44 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.7 0.35 -0.33
45 AT5G62520 similar to RCD one 5 similar to RCD one 5 0.7 0.31 -0.29
46 AT3G01400 ARM repeat superfamily protein 0.7 0.33 -0.32
47 AT5G25540 CTC-interacting domain 6 CTC-interacting domain 6 0.69 0.31 -0.32
48 AT3G57390 AGAMOUS-like 18 AGAMOUS-like 18 0.69 0.31 -0.32
49 AT3G13430 RING/U-box superfamily protein 0.69 0.31 -0.28
50 AT3G17860 jasmonate-zim-domain protein 3 JASMONATE-INSENSITIVE 3,
jasmonate-zim-domain protein 3,
TIFY6B		 0.69 0.3 -0.32
51 AT1G53840 pectin methylesterase 1 pectin methylesterase 1, pectin
methylesterase 1		 0.69 0.32 -0.32
52 AT2G33390 unknown protein; Has 34 Blast hits to 34 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.33
53 AT5G08190 nuclear factor Y, subunit B12 nuclear factor Y, subunit B12 0.68 0.34 -0.33
54 AT3G14410 Nucleotide/sugar transporter family protein 0.68 0.33 -0.31
55 AT5G10950 Tudor/PWWP/MBT superfamily protein 0.68 0.32 -0.3
56 AT2G45980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ATG8-interacting protein 1 0.68 0.34 -0.31
57 AT4G29140 MATE efflux family protein ACTIVATED DISEASE SUSCEPTIBILITY 1 0.68 0.31 -0.32
58 AT3G59350 Protein kinase superfamily protein 0.68 0.31 -0.32
59 AT1G13650 BEST Arabidopsis thaliana protein match is: 18S
pre-ribosomal assembly protein gar2-related
(TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in
255 species: Archae - 22; Bacteria - 222; Metazoa - 684;
Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes -
2392 (source: NCBI BLink).		 -0.68 0.33 -0.32
60 AT5G10040 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65207.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.68 0.34 -0.32
61 AT2G35160 SU(VAR)3-9 homolog 5 SET DOMAIN-CONTAINING PROTEIN 9,
SU(VAR)3-9 homolog 5		 -0.68 0.29 -0.32
62 AT5G50230 Transducin/WD40 repeat-like superfamily protein 0.68 0.33 -0.32
63 AT3G16740 F-box and associated interaction domains-containing protein 0.68 0.29 -0.31
64 AT4G34270 TIP41-like family protein 0.68 0.35 -0.3
65 AT3G20400 F-box associated ubiquitination effector family protein EMBRYO DEFECTIVE 2743 -0.68 0.33 -0.32
66 AT2G41430 dehydration-induced protein (ERD15) CTC-Interacting Domain 1, EARLY
RESPONSIVE TO DEHYDRATION 15,
LIGHT STRESS-REGULATED 1		 0.68 0.3 -0.32
67 AT5G19030 RNA-binding (RRM/RBD/RNP motifs) family protein 0.68 0.31 -0.31
68 AT5G55380 MBOAT (membrane bound O-acyl transferase) family protein -0.67 0.33 -0.32
69 AT1G13080 cytochrome P450, family 71, subfamily B, polypeptide 2 cytochrome P450, family 71,
subfamily B, polypeptide 2		 -0.67 0.34 -0.31
70 AT4G35420 dihydroflavonol 4-reductase-like1 dihydroflavonol 4-reductase-like1,
tetraketide alpha-pyrone reductase
1		 -0.67 0.29 -0.31
71 AT5G55530 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.67 0.3 -0.32
72 AT4G19910 Toll-Interleukin-Resistance (TIR) domain family protein -0.67 0.32 -0.32
73 AT2G36730 Pentatricopeptide repeat (PPR) superfamily protein -0.67 0.28 -0.31
74 AT4G16500 Cystatin/monellin superfamily protein 0.67 0.32 -0.35
75 AT5G23170 Protein kinase superfamily protein -0.67 0.31 -0.33
76 AT5G05100 Single-stranded nucleic acid binding R3H protein 0.67 0.33 -0.31
77 AT3G05750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G26910.1); Has 2317
Blast hits to 1467 proteins in 247 species: Archae - 4;
Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180;
Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).		 -0.67 0.33 -0.3
78 AT5G51720 2 iron, 2 sulfur cluster binding -0.67 0.3 -0.31
79 AT3G25950 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 -0.66 0.32 -0.29
80 AT4G02660 Beige/BEACH domain ;WD domain, G-beta repeat protein -0.66 0.31 -0.33
81 AT3G16060 ATP binding microtubule motor family protein -0.66 0.33 -0.31
82 AT3G25560 NSP-interacting kinase 2 NSP-interacting kinase 2 -0.65 0.31 -0.31
83 AT1G57590 Pectinacetylesterase family protein -0.65 0.32 -0.33
84 AT2G38590 F-box and associated interaction domains-containing protein -0.65 0.29 -0.32
85 AT4G32780 phosphoinositide binding -0.65 0.3 -0.33
86 AT2G18120 SHI-related sequence 4 SHI-related sequence 4 -0.65 0.31 -0.31
87 AT1G21090 Cupredoxin superfamily protein -0.64 0.33 -0.3
88 AT3G18120 F-box associated ubiquitination effector family protein -0.64 0.29 -0.31
89 AT3G43670 Copper amine oxidase family protein -0.64 0.33 -0.28
90 AT3G46130 myb domain protein 48 myb domain protein 48, ATMYB48-1,
ATMYB48-2, ATMYB48-3, myb domain
protein 48		 -0.64 0.33 -0.31
91 AT2G17260 glutamate receptor 2 ATGLR2, ATGLR3.1, glutamate
receptor 2, GLR3.1		 -0.64 0.33 -0.33
92 AT3G57920 squamosa promoter binding protein-like 15 squamosa promoter binding
protein-like 15		 -0.63 0.3 -0.31
93 AT2G29110 glutamate receptor 2.8 glutamate receptor 2.8, GLR2.8,
glutamate receptor 2.8		 -0.63 0.33 -0.32
94 AT5G39870 Protein of unknown function (DUF1216) -0.63 0.33 -0.31
95 AT1G77310 BEST Arabidopsis thaliana protein match is:
wound-responsive family protein (TAIR:AT1G21610.1); Has 493
Blast hits to 482 proteins in 163 species: Archae - 0;
Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65;
Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).		 -0.63 0.32 -0.31
96 AT2G27990 BEL1-like homeodomain 8 BEL1-like homeodomain 8,
POUND-FOOLISH		 -0.63 0.32 -0.32
97 AT5G01550 lectin receptor kinase a4.1 lectin receptor kinase a4.1 -0.63 0.32 -0.31
98 AT1G66170 RING/FYVE/PHD zinc finger superfamily protein MALE MEIOCYTE DEATH 1 -0.62 0.31 -0.32
99 AT5G39560 Galactose oxidase/kelch repeat superfamily protein -0.62 0.32 -0.3
100 AT1G29200 O-fucosyltransferase family protein -0.61 0.32 -0.31
101 AT5G41620 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast, plasma
membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.61 0.32 -0.31
102 AT5G17170 rubredoxin family protein enhancer of sos3-1 -0.61 0.31 -0.31