AT4G40040 : -
Query Information
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AGICode AT4G40040
Description Histone superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G40040 Histone superfamily protein 1 0.32 -0.32
2 AT4G37880 LisH/CRA/RING-U-box domains-containing protein 0.81 0.3 -0.3
3 AT1G75950 S phase kinase-associated protein 1 ARABIDOPSIS SKP1 HOMOLOGUE 1,
ATSKP1, S phase kinase-associated
protein 1, SKP1A, UFO INTERACTING
PROTEIN 1		 0.77 0.31 -0.3
4 AT5G09310 CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl
protease complex, presenilin enhancer-2 subunit
(InterPro:IPR019379); Has 168 Blast hits to 168 proteins in
71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi
- 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink).		 0.77 0.3 -0.3
5 AT3G21810 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.74 0.3 -0.3
6 AT1G06760 winged-helix DNA-binding transcription factor family
protein		 0.74 0.32 -0.32
7 AT3G48880 RNI-like superfamily protein 0.73 0.32 -0.32
8 AT2G47170 Ras-related small GTP-binding family protein ARF1A1C 0.73 0.31 -0.3
9 AT4G25770 alpha/beta-Hydrolases superfamily protein 0.72 0.32 -0.32
10 AT1G68070 Zinc finger, C3HC4 type (RING finger) family protein 0.72 0.33 -0.3
11 AT4G07460 transposable element gene 0.72 0.31 -0.33
12 AT2G22090 RNA-binding (RRM/RBD/RNP motifs) family protein UBA1A 0.72 0.31 -0.32
13 AT4G30590 early nodulin-like protein 12 AtENODL12, early nodulin-like
protein 12		 -0.71 0.31 -0.31
14 AT4G12350 myb domain protein 42 myb domain protein 42, myb domain
protein 42		 -0.71 0.31 -0.29
15 AT1G68460 isopentenyltransferase 1 Arabidopsis thaliana
isopentenyltransferase 1,
isopentenyltransferase 1		 -0.71 0.31 -0.32
16 AT3G02580 sterol 1 BOULE 1, DWARF 7, sterol 1 0.71 0.36 -0.33
17 AT1G76920 F-box family protein 0.71 0.32 -0.31
18 AT4G16444 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.7 0.3 -0.34
19 AT1G22885 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.7 0.31 -0.33
20 AT5G50020 DHHC-type zinc finger family protein 0.7 0.31 -0.29
21 AT2G06820 transposable element gene -0.69 0.33 -0.32
22 AT2G47200 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.69 0.29 -0.32
23 AT5G54420 Protein of unknown function (DUF295) -0.69 0.34 -0.33
24 AT2G30620 winged-helix DNA-binding transcription factor family
protein		 0.69 0.34 -0.32
25 AT3G44770 Protein of unknown function (DUF626) -0.69 0.3 -0.32
26 AT1G06060 LisH and RanBPM domains containing protein 0.69 0.3 -0.33
27 AT5G59910 Histone superfamily protein HTB4 0.69 0.3 -0.31
28 AT5G65960 GTP binding 0.68 0.33 -0.33
29 AT2G36060 MMS ZWEI homologue 3 MMS ZWEI homologue 3, UBIQUITIN E2
VARIANT 1C		 0.68 0.32 -0.28
30 AT5G17690 like heterochromatin protein (LHP1) AtLHP1, LIKE HETEROCHROMATIN
PROTEIN 1, TERMINAL FLOWER 2		 -0.68 0.33 -0.31
31 AT1G32410 Vacuolar protein sorting 55 (VPS55) family protein 0.68 0.33 -0.32
32 AT4G30480 Tetratricopeptide repeat (TPR)-like superfamily protein AtTPR1, tetratricopeptide repeat 1 0.68 0.31 -0.31
33 AT3G58280 Arabidopsis phospholipase-like protein (PEARLI 4) with
TRAF-like domain		 -0.68 0.32 -0.33
34 AT3G62560 Ras-related small GTP-binding family protein 0.68 0.33 -0.3
35 AT1G72570 Integrase-type DNA-binding superfamily protein 0.68 0.3 -0.3
36 AT3G55770 GATA type zinc finger transcription factor family protein WLIM2b 0.68 0.31 -0.32
37 AT1G30120 pyruvate dehydrogenase E1 beta pyruvate dehydrogenase E1 beta 0.68 0.3 -0.33
38 AT2G37360 ABC-2 type transporter family protein ATP-binding cassette G2 -0.68 0.32 -0.31
39 AT2G42670 Protein of unknown function (DUF1637) 0.67 0.31 -0.3
40 AT1G03350 BSD domain-containing protein 0.67 0.3 -0.32
41 AT2G46490 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits
to 34 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.3 -0.32
42 AT2G16760 Calcium-dependent phosphotriesterase superfamily protein -0.67 0.32 -0.31
43 AT3G28030 5'-3' exonuclease family protein ULTRAVIOLET HYPERSENSITIVE 3, UV
REPAIR DEFECTIVE 1		 -0.67 0.3 -0.31
44 AT5G58850 myb domain protein 119 MYB DOMAIN PROTEIN 119, myb domain
protein 119		 0.67 0.3 -0.35
45 AT1G54280 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.67 0.31 -0.3
46 AT5G60280 Concanavalin A-like lectin protein kinase family protein -0.67 0.32 -0.3
47 AT5G26310 UDP-Glycosyltransferase superfamily protein UGT72E3 -0.67 0.31 -0.3
48 AT1G73720 transducin family protein / WD-40 repeat family protein SUPPRESSORS OF MEC-8 AND UNC-52 1 0.66 0.32 -0.32
49 AT4G26130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G56980.1); Has 121 Blast hits to 116 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi -
0; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.66 0.33 -0.32
50 AT2G19310 HSP20-like chaperones superfamily protein 0.66 0.31 -0.3
51 AT4G27690 vacuolar protein sorting 26B vacuolar protein sorting 26B 0.66 0.33 -0.32
52 AT5G13130 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 0.66 0.3 -0.32
53 AT1G27650 U2 snRNP auxiliary factor small subunit, putative ATU2AF35A 0.66 0.32 -0.31
54 AT4G04500 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 cysteine-rich RLK (RECEPTOR-like
protein kinase) 37		 -0.66 0.32 -0.32
55 AT4G10750 Phosphoenolpyruvate carboxylase family protein 0.66 0.33 -0.32
56 AT5G10450 G-box regulating factor 6 14-3-3 PROTEIN G-BOX FACTOR14
LAMBDA, AFT1, G-box regulating
factor 6		 0.66 0.3 -0.32
57 AT3G18900 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: synergid; CONTAINS InterPro
DOMAIN/s: F-box associated domain, type 1
(InterPro:IPR006527), F-box associated interaction domain
(InterPro:IPR017451), Protein of unknown function DUF547
(InterPro:IPR006869); BEST Arabidopsis thaliana protein
match is: Protein of unknown function, DUF547
(TAIR:AT5G66600.3).		 -0.66 0.33 -0.32
58 AT3G03980 NAD(P)-binding Rossmann-fold superfamily protein 0.65 0.32 -0.33
59 AT5G12460 Protein of unknown function (DUF604) -0.65 0.31 -0.3
60 AT3G04970 DHHC-type zinc finger family protein 0.65 0.3 -0.31
61 AT3G52080 cation/hydrogen exchanger 28 cation/hydrogen exchanger 28 -0.65 0.31 -0.34
62 AT5G09630 LisH/CRA/RING-U-box domains-containing protein 0.65 0.33 -0.3
63 AT3G44550 fatty acid reductase 5 fatty acid reductase 5 -0.65 0.31 -0.3
64 AT1G55190 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F2, PRA7 0.64 0.32 -0.32
65 AT1G06490 glucan synthase-like 7 Arabidopsis thaliana glucan
synthase-like 7, atgsl7, callose
synthase 7, gsl07, glucan
synthase-like 7, glucan
synthase-like 7		 -0.64 0.29 -0.31
66 AT5G02380 metallothionein 2B metallothionein 2B 0.64 0.3 -0.31
67 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 -0.64 0.34 -0.31
68 AT2G36485 ENTH/VHS family protein 0.64 0.28 -0.33
69 AT1G69990 Leucine-rich repeat protein kinase family protein -0.64 0.29 -0.31
70 AT5G42000 ORMDL family protein 0.64 0.31 -0.33
71 AT4G11170 Disease resistance protein (TIR-NBS-LRR class) family -0.64 0.32 -0.32
72 AT3G46390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G32337.1); Has 5 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.64 0.32 -0.33
73 AT3G22990 ARM repeat superfamily protein LEAF AND FLOWER RELATED 0.64 0.31 -0.32
74 AT2G02400 NAD(P)-binding Rossmann-fold superfamily protein 0.64 0.32 -0.31
75 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 0.64 0.32 -0.3
76 AT2G01130 DEA(D/H)-box RNA helicase family protein -0.63 0.34 -0.3
77 AT1G32400 tobamovirus multiplication 2A tobamovirus multiplication 2A 0.63 0.34 -0.32
78 AT3G50250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G19270.1); Has 6 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.33 -0.31
79 AT2G04340 unknown protein; Has 24 Blast hits to 24 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.33 -0.33
80 AT5G02920 F-box/RNI-like superfamily protein -0.63 0.34 -0.3
81 AT1G76200 unknown protein; Has 96 Blast hits to 96 proteins in 48
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47;
Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source:
NCBI BLink).		 0.63 0.29 -0.32
82 AT2G47560 RING/U-box superfamily protein 0.63 0.32 -0.33
83 AT5G22030 ubiquitin-specific protease 8 ubiquitin-specific protease 8 -0.63 0.32 -0.34
84 AT5G58970 uncoupling protein 2 uncoupling protein 2, uncoupling
protein 2		 0.63 0.33 -0.33
85 AT5G15440 EID1-like 1 EID1-like 1 0.63 0.34 -0.33
86 AT5G64690 neurofilament triplet H protein-related -0.63 0.31 -0.31
87 AT5G41340 ubiquitin conjugating enzyme 4 UBIQUITIN CONJUGATING ENZYME 4,
ubiquitin conjugating enzyme 4		 0.63 0.28 -0.32
88 AT1G15590 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT1G80400.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.62 0.3 -0.34
89 AT3G19780 LOCATED IN: endomembrane system; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF179
(InterPro:IPR003774), Thioredoxin fold
(InterPro:IPR012335), Thioredoxin-like fold
(InterPro:IPR012336); BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF179)
(TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32
species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi -
3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.62 0.3 -0.32
90 AT5G39250 F-box family protein 0.62 0.32 -0.32
91 AT1G47310 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.62 0.33 -0.32
92 AT1G21430 Flavin-binding monooxygenase family protein YUC11 -0.62 0.32 -0.3
93 AT5G18650 CHY-type/CTCHY-type/RING-type Zinc finger protein 0.62 0.31 -0.32
94 AT3G48680 gamma carbonic anhydrase-like 2 AtCAL2, gamma carbonic
anhydrase-like 2		 0.62 0.3 -0.32
95 AT5G66890 Leucine-rich repeat (LRR) family protein -0.62 0.3 -0.34
96 AT3G57950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast
hits to 81 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.31 -0.31
97 AT4G13820 Leucine-rich repeat (LRR) family protein -0.62 0.32 -0.31
98 AT5G52340 exocyst subunit exo70 family protein A2 exocyst subunit exo70 family
protein A2, exocyst subunit exo70
family protein A2		 0.62 0.32 -0.34
99 AT1G54140 TATA binding protein associated factor 21kDa subunit TBP-ASSOCIATED FACTOR 9, TATA
binding protein associated factor
21kDa subunit		 0.62 0.32 -0.31
100 AT4G10310 high-affinity K+ transporter 1 ATHKT1, high-affinity K+
transporter 1		 0.62 0.31 -0.33
101 AT1G68090 annexin 5 annexin 5, ANNEXIN ARABIDOPSIS
THALIANA 5		 -0.62 0.34 -0.32
102 AT3G50400 GDSL-like Lipase/Acylhydrolase superfamily protein -0.62 0.32 -0.33
103 AT3G02555 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits
to 130 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.33 -0.32
104 AT4G03510 RING membrane-anchor 1 ATRMA1, RING membrane-anchor 1 0.62 0.33 -0.32
105 AT1G54540 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.62 0.31 -0.3
106 AT3G42530 transposable element gene -0.62 0.31 -0.3
107 AT3G04730 indoleacetic acid-induced protein 16 indoleacetic acid-induced protein
16		 0.62 0.3 -0.32
108 AT5G55160 small ubiquitin-like modifier 2 ATSUMO2, SMALL UBIQUITIN-LIKE
MODIFIER 2, SMALL UBIQUITIN-LIKE
MODIFIER 2, small ubiquitin-like
modifier 2		 0.62 0.3 -0.31
109 AT2G19340 Oligosaccharyltransferase complex/magnesium transporter
family protein		 0.61 0.32 -0.3
110 AT5G05130 DNA/RNA helicase protein -0.61 0.32 -0.33
111 AT1G49590 C2H2 and C2HC zinc fingers superfamily protein 0.61 0.32 -0.33
112 AT1G79820 Major facilitator superfamily protein SUPPRESSOR OF G PROTEIN BETA1 -0.61 0.33 -0.33
113 AT5G53635 F-box/RNI-like/FBD-like domains-containing protein -0.61 0.32 -0.3
114 AT2G35150 EXORDIUM like 1 EXORDIUM LIKE 7 -0.61 0.3 -0.33
115 AT5G10880 tRNA synthetase-related / tRNA ligase-related -0.61 0.31 -0.3
116 AT5G05670 signal recognition particle binding 0.61 0.31 -0.31
117 AT4G19850 lectin-related ARABIDOPSIS THALIANA PHLOEM
PROTEIN 2-A2, phloem protein 2-A2,
PP2A2		 0.61 0.3 -0.31
118 AT5G63620 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.61 0.32 -0.33
119 AT1G53690 DNA directed RNA polymerase, 7 kDa subunit 0.61 0.32 -0.3
120 AT5G26960 Galactose oxidase/kelch repeat superfamily protein 0.61 0.31 -0.34
121 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 -0.6 0.31 -0.33
122 AT4G12920 Eukaryotic aspartyl protease family protein UNDEAD -0.6 0.33 -0.3
123 AT1G64790 ILITYHIA ILITYHIA -0.6 0.32 -0.31
124 AT1G10320 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.6 0.32 -0.29
125 AT4G11690 Pentatricopeptide repeat (PPR-like) superfamily protein -0.6 0.3 -0.31
126 AT3G22350 F-box and associated interaction domains-containing protein -0.59 0.27 -0.31
127 AT2G16970 Major facilitator superfamily protein maternal effect embryo arrest 15 -0.59 0.33 -0.33
128 AT3G24480 Leucine-rich repeat (LRR) family protein -0.59 0.33 -0.32
129 AT5G49350 Glycine-rich protein family -0.59 0.31 -0.3
130 AT5G52950 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.59 0.32 -0.3
131 AT3G55160 unknown protein; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2428, death-receptor-like
(InterPro:IPR019442); Has 357 Blast hits to 330 proteins in
163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi
- 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45
(source: NCBI BLink).		 -0.59 0.33 -0.32
132 AT4G22950 AGAMOUS-like 19 AGAMOUS-like 19, GL19 -0.58 0.34 -0.3
133 AT1G04730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMOSOME TRANSMISSION FIDELITY
18		 -0.58 0.31 -0.33
134 AT5G44510 target of AVRB operation1 target of AVRB operation1 -0.58 0.32 -0.32
135 AT4G02660 Beige/BEACH domain ;WD domain, G-beta repeat protein -0.58 0.33 -0.3
136 AT1G44740 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: embryo, leaf whorl, flower,
seed; EXPRESSED DURING: F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 8 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
1; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
137 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.69 0.43 -0.46 C0107
138 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.6 0.47 -0.44 C0087