AT4G39990 : GTP-BINDING PROTEIN 3
Query Information
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AGICode AT4G39990
Description RAB GTPase homolog A4B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G39990 RAB GTPase homolog A4B GTP-BINDING PROTEIN 3, ATRAB11G,
ARABIDOPSIS THALIANA RAB GTPASE
HOMOLOG A 4B, RAB GTPase homolog
A4B		 1 0.3 -0.32
2 AT1G53240 Lactate/malate dehydrogenase family protein mitochondrial malate dehydrogenase
1		 0.87 0.31 -0.3
3 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.84 0.31 -0.3
4 AT4G12730 FASCICLIN-like arabinogalactan 2 FASCICLIN-like arabinogalactan 2 0.84 0.3 -0.32
5 AT5G18520 Lung seven transmembrane receptor family protein 0.82 0.31 -0.31
6 AT5G63560 HXXXD-type acyl-transferase family protein -0.82 0.3 -0.33
7 AT5G65270 RAB GTPase homolog A4A RAB GTPase homolog A4A, RAB GTPase
homolog A4A		 0.82 0.31 -0.34
8 AT5G18280 apyrase 2 apyrase 2, apyrase 2 0.81 0.28 -0.33
9 AT4G14360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.81 0.31 -0.3
10 AT1G11650 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45B, RBP45B 0.81 0.31 -0.32
11 AT1G56330 secretion-associated RAS 1B SECRETION-ASSOCIATED RAS 1,
secretion-associated RAS 1B,
ARABIDOPSIS THALIANA
SECRETION-ASSOCIATED RAS 1B,
SECRETION-ASSOCIATED RAS 1,
secretion-associated RAS 1B		 0.81 0.31 -0.3
12 AT1G23490 ADP-ribosylation factor 1 ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR,
ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR 1A		 0.81 0.31 -0.32
13 AT3G11800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.81 0.29 -0.31
14 AT2G25690 Protein of unknown function (DUF581) -0.8 0.31 -0.33
15 AT5G59880 actin depolymerizing factor 3 actin depolymerizing factor 3 0.8 0.31 -0.3
16 AT1G14830 DYNAMIN-like 1C DYNAMIN-like 1C, ARABIDOPSIS
DYNAMIN-LIKE PROTEIN 5,
DYNAMIN-like 1C, DYNAMIN RELATED
PROTEIN 1C		 0.8 0.33 -0.3
17 AT4G31130 Protein of unknown function (DUF1218) 0.8 0.31 -0.32
18 AT3G04830 Protein prenylyltransferase superfamily protein 0.79 0.29 -0.32
19 AT3G07230 wound-responsive protein-related 0.79 0.3 -0.33
20 AT3G63210 Protein of unknown function (DUF581) MEDIATOR OF ABA-REGULATED DORMANCY
1		 -0.79 0.32 -0.3
21 AT5G60920 COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family		 COBRA 0.79 0.31 -0.31
22 AT1G26750 unknown protein; Has 44 Blast hits to 44 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.79 0.33 -0.3
23 AT2G32580 Protein of unknown function (DUF1068) 0.79 0.33 -0.31
24 AT1G02140 mago nashi family protein HAPLESS 1, MAGO NASHI, MATERNAL
EFFECT EMBRYO ARREST 63		 0.79 0.29 -0.3
25 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 0.79 0.31 -0.32
26 AT5G07110 prenylated RAB acceptor 1.B6 prenylated RAB acceptor 1.B6 0.78 0.32 -0.3
27 AT3G07470 Protein of unknown function, DUF538 0.78 0.31 -0.31
28 AT3G13800 Metallo-hydrolase/oxidoreductase superfamily protein 0.78 0.31 -0.31
29 AT1G70490 Ras-related small GTP-binding family protein ARFA1D, ATARFA1D 0.78 0.31 -0.32
30 AT1G29150 non-ATPase subunit 9 non-ATPase subunit 9, REGULATORY
PARTICLE NON-ATPASE 6		 0.78 0.31 -0.32
31 AT4G34000 abscisic acid responsive elements-binding factor 3 abscisic acid responsive
elements-binding factor 3, AtABF3,
DC3 PROMOTER-BINDING FACTOR 5		 -0.78 0.32 -0.29
32 AT1G01910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.33 -0.32
33 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.78 0.32 -0.3
34 AT1G22200 Endoplasmic reticulum vesicle transporter protein 0.77 0.31 -0.34
35 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.77 0.32 -0.32
36 AT1G80500 SNARE-like superfamily protein 0.77 0.31 -0.32
37 AT5G05820 Nucleotide-sugar transporter family protein 0.77 0.31 -0.3
38 AT3G17390 S-adenosylmethionine synthetase family protein METHIONINE ADENOSYLTRANSFERASE 4,
METHIONINE OVER-ACCUMULATOR 3,
S-ADENOSYLMETHIONINE SYNTHETASE 3		 0.77 0.31 -0.3
39 AT3G05280 Integral membrane Yip1 family protein 0.77 0.32 -0.32
40 AT2G45010 PLAC8 family protein 0.76 0.31 -0.31
41 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.76 0.34 -0.29
42 AT1G05850 Chitinase family protein ATCTL1, CHITINASE-LIKE PROTEIN 1,
ECTOPIC DEPOSITION OF LIGNIN IN
PITH, ECTOPIC DEPOSITION OF LIGNIN
IN PITH 1, ECTOPIC ROOT HAIR 2,
SENSITIVE TO HOT TEMPERATURES 2,
POM-POM1		 0.76 0.32 -0.34
43 AT3G29360 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 2 0.76 0.31 -0.3
44 AT2G46170 Reticulon family protein 0.76 0.31 -0.31
45 AT4G26210 Mitochondrial ATP synthase subunit G protein 0.76 0.29 -0.3
46 AT2G18050 histone H1-3 histone H1-3 -0.76 0.31 -0.32
47 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 0.76 0.31 -0.36
48 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 0.76 0.3 -0.31
49 AT4G32410 cellulose synthase 1 CELLULOSE SYNTHASE 1, cellulose
synthase 1, RADIALLY SWOLLEN 1		 0.75 0.34 -0.29
50 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 0.75 0.32 -0.32
51 AT2G30010 TRICHOME BIREFRINGENCE-LIKE 45 TRICHOME BIREFRINGENCE-LIKE 45 0.75 0.31 -0.31
52 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.33 -0.31
53 AT1G45688 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast
hits to 242 proteins in 39 species: Archae - 0; Bacteria -
11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17;
Other Eukaryotes - 8 (source: NCBI BLink).		 0.75 0.33 -0.31
54 AT1G52730 Transducin/WD40 repeat-like superfamily protein 0.75 0.33 -0.32
55 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.75 0.32 -0.33
56 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 -0.74 0.35 -0.3
57 AT1G03870 FASCICLIN-like arabinoogalactan 9 FASCICLIN-like arabinoogalactan 9 0.74 0.3 -0.31
58 AT1G76670 Nucleotide-sugar transporter family protein 0.74 0.32 -0.3
59 AT1G60780 Clathrin adaptor complexes medium subunit family protein HAPLESS 13 0.74 0.33 -0.33
60 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.74 0.31 -0.31
61 AT3G61130 galacturonosyltransferase 1 galacturonosyltransferase 1, LGT1 0.74 0.32 -0.3
62 AT1G26580 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.31 -0.31
63 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 0.74 0.33 -0.31
64 AT3G52930 Aldolase superfamily protein 0.73 0.32 -0.3
65 AT1G22530 PATELLIN 2 PATELLIN 2 0.73 0.3 -0.31
66 AT5G64290 dicarboxylate transport 2.1 DCT, dicarboxylate transport 2.1 0.73 0.34 -0.31
67 AT5G61780 TUDOR-SN protein 2 Arabidopsis thaliana TUDOR-SN
protein 2, TUDOR-SN protein 2,
TUDOR-SN protein 2		 0.73 0.3 -0.3
68 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.33 -0.32
69 AT3G07330 Cellulose-synthase-like C6 ATCSLC06, Cellulose-synthase-like
C6, CELLULOSE-SYNTHASE LIKE C6,
Cellulose-synthase-like C6		 0.73 0.33 -0.34
70 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 0.73 0.31 -0.32
71 AT4G12650 Endomembrane protein 70 protein family 0.73 0.3 -0.33
72 AT5G09650 pyrophosphorylase 6 pyrophosphorylase 6,
pyrophosphorylase 6		 0.73 0.33 -0.33
73 AT5G47030 ATPase, F1 complex, delta/epsilon subunit 0.73 0.31 -0.29
74 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP 0.72 0.34 -0.31
75 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.72 0.32 -0.32
76 AT1G62380 ACC oxidase 2 ACC oxidase 2, ATACO2 0.72 0.32 -0.32
77 AT1G79550 phosphoglycerate kinase phosphoglycerate kinase 0.72 0.31 -0.31
78 AT1G14560 Mitochondrial substrate carrier family protein 0.72 0.34 -0.3
79 AT3G57610 adenylosuccinate synthase adenylosuccinate synthase 0.72 0.31 -0.32
80 AT1G64910 UDP-Glycosyltransferase superfamily protein 0.72 0.31 -0.3
81 AT4G38510 ATPase, V1 complex, subunit B protein 0.72 0.32 -0.33
82 AT5G10840 Endomembrane protein 70 protein family 0.72 0.32 -0.33
83 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.31 -0.3
84 AT2G25890 Oleosin family protein -0.72 0.3 -0.34
85 AT2G10070 transposable element gene 0.72 0.31 -0.33
86 AT3G13784 cell wall invertase 5 cell wall invertase 5, cell wall
invertase 5		 -0.72 0.28 -0.32
87 AT2G19900 NADP-malic enzyme 1 Arabidopsis thaliana NADP-malic
enzyme 1, NADP-malic enzyme 1		 -0.72 0.31 -0.32
88 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.72 0.32 -0.32
89 AT1G24600 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits
to 18 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.72 0.34 -0.3
90 AT4G34720 ATPase, F0/V0 complex, subunit C protein ATVHA-C1, AVA-P1, VACUOLAR
H+-PUMPING ATPASE C1		 0.71 0.32 -0.32
91 AT1G26850 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.71 0.32 -0.31
92 AT1G64110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 DUO1-activated ATPase 1 -0.71 0.32 -0.32
93 AT4G23493 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.71 0.32 -0.33
94 AT3G24310 myb domain protein 305 MYB DOMAIN PROTEIN 71, myb domain
protein 305		 -0.71 0.31 -0.3
95 AT5G63890 histidinol dehydrogenase histidinol dehydrogenase,
histidinol dehydrogenase,
HISTIDINE BIOSYNTHESIS 8		 0.71 0.33 -0.29
96 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.71 0.34 -0.34
97 AT1G63220 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.71 0.32 -0.31
98 AT1G53500 NAD-dependent epimerase/dehydratase family protein ARABIDOPSIS THALIANA
MUCILAGE-MODIFIED 4, ARABIDOPSIS
THALIANA RHAMNOSE BIOSYNTHESIS 2,
MUCILAGE-MODIFIED 4, RHAMNOSE
BIOSYNTHESIS 2		 0.71 0.33 -0.32
99 AT1G78240 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 OSU1, QUASIMODO2, TUMOROUS SHOOT
DEVELOPMENT 2		 0.71 0.33 -0.33
100 AT5G19760 Mitochondrial substrate carrier family protein 0.71 0.31 -0.3
101 AT3G44540 fatty acid reductase 4 fatty acid reductase 4 -0.71 0.31 -0.3
102 AT4G16143 importin alpha isoform 2 importin alpha isoform 2 0.71 0.32 -0.32
103 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 0.71 0.3 -0.31
104 AT2G25590 Plant Tudor-like protein -0.7 0.35 -0.31
105 AT2G01580 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits
to 129 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.33
106 AT3G10740 alpha-L-arabinofuranosidase 1 ALPHA-L-ARABINOFURANOSIDASE,
ALPHA-L-ARABINOFURANOSIDASE 1,
alpha-L-arabinofuranosidase 1,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 1		 -0.7 0.31 -0.31
107 AT2G19810 CCCH-type zinc finger family protein AtOZF1, Oxidation-related Zinc
Finger 1		 -0.68 0.31 -0.31
108 AT1G21430 Flavin-binding monooxygenase family protein YUC11 -0.67 0.32 -0.3
109 AT1G70420 Protein of unknown function (DUF1645) -0.67 0.31 -0.31
110 AT5G24080 Protein kinase superfamily protein -0.67 0.31 -0.32
111 AT1G53070 Legume lectin family protein -0.67 0.32 -0.31
112 AT1G08040 Protein of unknown function (DUF707) -0.67 0.31 -0.3
113 AT4G05100 myb domain protein 74 myb domain protein 74, myb domain
protein 74		 -0.67 0.29 -0.31
114 AT4G33550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.66 0.32 -0.33
115 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 -0.66 0.31 -0.29
116 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.66 0.33 -0.32
117 AT4G09840 unknown protein; Has 25 Blast hits to 25 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4;
Plants - 9; Viruses - 3; Other Eukaryotes - 5 (source: NCBI
BLink).		 -0.65 0.32 -0.32
118 AT4G25880 pumilio 6 pumilio 6, pumilio 6 -0.65 0.32 -0.31
119 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.65 0.31 -0.32
120 AT4G36740 homeobox protein 40 homeobox protein 40, HB-5,
homeobox protein 40		 -0.64 0.3 -0.33
121 AT5G01880 RING/U-box superfamily protein -0.64 0.3 -0.33
122 AT1G14730 Cytochrome b561/ferric reductase transmembrane protein
family		 -0.64 0.31 -0.33
123 AT1G55740 seed imbibition 1 seed imbibition 1, raffinose
synthase 1, seed imbibition 1		 -0.64 0.32 -0.32
124 AT5G22700 F-box/RNI-like/FBD-like domains-containing protein -0.63 0.34 -0.32
125 AT4G28040 nodulin MtN21 /EamA-like transporter family protein -0.63 0.33 -0.31
126 AT5G19870 Family of unknown function (DUF716) -0.62 0.32 -0.31
127 AT3G22830 heat shock transcription factor A6B ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A6B, heat
shock transcription factor A6B		 -0.62 0.31 -0.34
128 AT2G19550 alpha/beta-Hydrolases superfamily protein -0.62 0.33 -0.3
129 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 -0.61 0.32 -0.31
130 AT1G68710 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.61 0.31 -0.33
131 AT2G45340 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.33
132 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 -0.6 0.33 -0.32
133 AT5G49120 Protein of unknown function (DUF581) -0.6 0.31 -0.31
134 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.6 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
135 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.78 0.43 -0.42 C0109