AT4G39620 : A. THALIANA PENTATRICOPEPTIDE REPEAT 5
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G39620
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 1 0.32 -0.31
2 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.93 0.31 -0.28
3 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.93 0.36 -0.35
4 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.92 0.27 -0.32
5 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.92 0.31 -0.31
6 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.92 0.31 -0.32
7 AT3G25860 2-oxoacid dehydrogenases acyltransferase family protein LTA2, PLASTID E2 SUBUNIT OF
PYRUVATE DECARBOXYLASE		 0.92 0.31 -0.3
8 AT3G13120 Ribosomal protein S10p/S20e family protein 0.92 0.3 -0.3
9 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.92 0.31 -0.32
10 AT3G49470 nascent polypeptide-associated complex subunit alpha-like
protein 2		 nascent polypeptide-associated
complex subunit alpha-like protein
2		 0.91 0.3 -0.32
11 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.91 0.3 -0.34
12 AT3G28460 methyltransferases 0.91 0.32 -0.33
13 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.91 0.3 -0.31
14 AT4G27600 pfkB-like carbohydrate kinase family protein GENES NECESSARY FOR THE
ACHIEVEMENT OF RUBISCO
ACCUMULATION 5		 0.91 0.3 -0.36
15 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.91 0.31 -0.32
16 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.91 0.32 -0.33
17 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.91 0.32 -0.33
18 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.9 0.31 -0.3
19 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.33 -0.31
20 AT3G06840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49170.1); Has 33 Blast hits
to 33 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.9 0.3 -0.32
21 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.31 -0.33
22 AT4G09650 ATP synthase delta-subunit gene ATP synthase delta-subunit gene,
PIGMENT DEFECTIVE 332		 0.9 0.33 -0.31
23 AT2G42070 nudix hydrolase homolog 23 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 23, nudix
hydrolase homolog 23, nudix
hydrolase homolog 23		 0.9 0.32 -0.32
24 AT3G62060 Pectinacetylesterase family protein 0.9 0.33 -0.32
25 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.9 0.33 -0.31
26 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.33 -0.31
27 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.9 0.32 -0.29
28 AT4G30620 Uncharacterised BCR, YbaB family COG0718 0.9 0.31 -0.33
29 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.9 0.29 -0.3
30 AT4G15510 Photosystem II reaction center PsbP family protein 0.9 0.33 -0.31
31 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.9 0.3 -0.34
32 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.9 0.32 -0.33
33 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.89 0.33 -0.31
34 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.32 -0.31
35 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.89 0.3 -0.3
36 AT1G26570 UDP-glucose dehydrogenase 1 UDP-GLUCOSE DEHYDROGENASE 1,
UDP-glucose dehydrogenase 1		 0.89 0.32 -0.31
37 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.89 0.31 -0.31
38 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.33 -0.28
39 AT1G78180 Mitochondrial substrate carrier family protein 0.89 0.33 -0.33
40 AT2G39670 Radical SAM superfamily protein 0.89 0.29 -0.31
41 AT4G34730 ribosome-binding factor A family protein 0.88 0.33 -0.3
42 AT5G10910 mraW methylase family protein 0.88 0.33 -0.3
43 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.88 0.32 -0.34
44 AT1G73110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.88 0.3 -0.32
45 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.88 0.33 -0.33
46 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.88 0.3 -0.32
47 AT1G32470 Single hybrid motif superfamily protein 0.88 0.31 -0.31
48 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.88 0.31 -0.31
49 AT4G37510 Ribonuclease III family protein 0.88 0.33 -0.32
50 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.33 -0.33
51 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.3 -0.32
52 AT2G28930 protein kinase 1B protein kinase 1B, protein kinase
1B		 0.88 0.31 -0.34
53 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.88 0.31 -0.33
54 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.88 0.3 -0.31
55 AT1G15730 Cobalamin biosynthesis CobW-like protein 0.87 0.32 -0.32
56 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3054 (InterPro:IPR021414);
Has 246 Blast hits to 246 proteins in 119 species: Archae -
14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).		 0.87 0.32 -0.3
57 AT1G11430 plastid developmental protein DAG, putative 0.87 0.29 -0.33
58 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.87 0.31 -0.36
59 AT1G16880 uridylyltransferase-related ACT domain repeats 11 0.87 0.35 -0.3
60 AT4G18370 DEGP protease 5 DEGP protease 5, DEGP PROTEASE 5,
PROTEASE HHOA PRECUSOR		 0.87 0.31 -0.32
61 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.87 0.31 -0.29
62 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.87 0.3 -0.3
63 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.87 0.34 -0.33
64 AT2G36230 Aldolase-type TIM barrel family protein ALBINO AND PALE GREEN 10, HISN3 0.87 0.33 -0.31
65 AT1G16790 ribosomal protein-related 0.87 0.32 -0.32
66 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.87 0.32 -0.32
67 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.87 0.3 -0.33
68 AT3G14110 Tetratricopeptide repeat (TPR)-like superfamily protein FLUORESCENT IN BLUE LIGHT 0.87 0.33 -0.32
69 AT5G51545 low psii accumulation2 low psii accumulation2 0.87 0.31 -0.32
70 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.31 -0.32
71 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.87 0.31 -0.32
72 AT2G47910 chlororespiratory reduction 6 chlororespiratory reduction 6 0.86 0.3 -0.33
73 AT2G26580 plant-specific transcription factor YABBY family protein YABBY5 0.86 0.31 -0.33
74 AT2G47450 chloroplast signal recognition particle component (CAO) CHAOS, CHLOROPLAST SIGNAL
RECOGNITION PARTICLE 43		 0.86 0.33 -0.33
75 AT3G01660 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.86 0.31 -0.31
76 AT3G09580 FAD/NAD(P)-binding oxidoreductase family protein 0.86 0.29 -0.31
77 AT1G04640 lipoyltransferase 2 lipoyltransferase 2 0.86 0.32 -0.29
78 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.86 0.3 -0.33
79 AT5G64620 cell wall / vacuolar inhibitor of fructosidase 2 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 2, cell wall /
vacuolar inhibitor of fructosidase
2		 0.86 0.3 -0.32
80 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.86 0.29 -0.31
81 AT5G66470 RNA binding;GTP binding 0.86 0.31 -0.3
82 AT3G47860 chloroplastic lipocalin chloroplastic lipocalin 0.86 0.31 -0.33
83 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.86 0.31 -0.31
84 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.86 0.32 -0.34
85 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.86 0.31 -0.31
86 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.86 0.32 -0.31
87 AT1G73655 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.86 0.31 -0.29
88 AT5G10160 Thioesterase superfamily protein 0.86 0.34 -0.3
89 AT5G47630 mitochondrial acyl carrier protein 3 mitochondrial acyl carrier protein
3		 0.86 0.33 -0.3
90 AT5G20630 germin 3 ARABIDOPSIS THALIANA GERMIN 3,
germin 3, GERMIN-LIKE PROTEIN 3,
GLP3A, GLP3B		 0.86 0.31 -0.3
91 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.86 0.32 -0.32
92 AT3G10500 NAC domain containing protein 53 NAC domain containing protein 53,
NAC domain containing protein 53		 -0.86 0.32 -0.32
93 AT1G63840 RING/U-box superfamily protein -0.85 0.32 -0.31
94 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.85 0.31 -0.32
95 AT5G13820 telomeric DNA binding protein 1 ATBP-1, ATBP1, ATTBP1, H-PROTEIN
PROMOTE, telomeric DNA binding
protein 1		 -0.84 0.33 -0.32
96 AT1G52080 actin binding protein family AR791 -0.83 0.34 -0.31
97 AT1G72700 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.82 0.32 -0.31
98 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 -0.8 0.31 -0.32
99 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.8 0.31 -0.29
100 AT5G16910 cellulose-synthase like D2 ATCSLD2, cellulose-synthase like
D2		 -0.8 0.31 -0.31
101 AT5G63970 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.8 0.31 -0.32
102 AT1G63440 heavy metal atpase 5 heavy metal atpase 5 -0.79 0.33 -0.32
103 AT3G48520 cytochrome P450, family 94, subfamily B, polypeptide 3 cytochrome P450, family 94,
subfamily B, polypeptide 3		 -0.79 0.32 -0.31
104 AT2G23450 Protein kinase superfamily protein -0.78 0.31 -0.32
105 AT3G23560 MATE efflux family protein ABERRANT LATERAL ROOT FORMATION 5 -0.78 0.3 -0.31
106 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.78 0.32 -0.3
107 AT1G03080 kinase interacting (KIP1-like) family protein -0.78 0.31 -0.32
108 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein -0.78 0.31 -0.34
109 AT1G64060 respiratory burst oxidase protein F respiratory burst oxidase protein
F, ARABIDOPSIS THALIANA
RESPIRATORY BURST OXIDASE HOMOLOG
F, respiratory burst oxidase
protein F, RBOHAP108, RESPIRATORY
BURST OXIDASE PROTEIN F		 -0.78 0.33 -0.32
110 AT4G08500 MAPK/ERK kinase kinase 1 ARAKIN, ATMEKK1, MAPKKK8, MAPK/ERK
kinase kinase 1		 -0.77 0.3 -0.33
111 AT2G39350 ABC-2 type transporter family protein ATP-binding cassette G1 -0.77 0.3 -0.32
112 AT1G20490 AMP-dependent synthetase and ligase family protein -0.76 0.35 -0.32
113 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.76 0.32 -0.31
114 AT3G45040 phosphatidate cytidylyltransferase family protein -0.76 0.32 -0.31
115 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.76 0.31 -0.34
116 AT1G63460 glutathione peroxidase 8 ATGPX8, glutathione peroxidase 8 -0.76 0.29 -0.31
117 AT5G67340 ARM repeat superfamily protein -0.75 0.34 -0.31
118 AT3G08720 serine/threonine protein kinase 2 Arabidopsis thaliana protein
kinase 19, ARABIDOPSIS THALIANA
PROTEIN KINASE 2, ARABIDOPSIS
THALIANA SERINE/THREONINE PROTEIN
KINASE 2, serine/threonine protein
kinase 2		 -0.75 0.31 -0.31
119 AT5G15730 Protein kinase superfamily protein AtCRLK2,
calcium/calmodulin-regulated
receptor-like kinase 2		 -0.75 0.32 -0.32
120 AT5G49280 hydroxyproline-rich glycoprotein family protein -0.75 0.31 -0.32
121 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.33 -0.3
122 AT3G14270 phosphatidylinositol-4-phosphate 5-kinase family protein FORMS APLOID AND BINUCLEATE CELLS
1B		 -0.75 0.32 -0.31
123 AT1G09960 sucrose transporter 4 SUCROSE TRANSPORTER 4, SUCROSE
TRANSPORTER 4, SUCROSE TRANSPORTER
4, sucrose transporter 4		 -0.75 0.3 -0.34
124 AT3G11420 Protein of unknown function (DUF604) -0.75 0.31 -0.33
125 AT2G29065 GRAS family transcription factor -0.75 0.32 -0.3
126 AT3G10450 serine carboxypeptidase-like 7 serine carboxypeptidase-like 7 -0.73 0.31 -0.32
127 AT5G58730 pfkB-like carbohydrate kinase family protein -0.73 0.34 -0.33
128 AT1G48370 YELLOW STRIPE like 8 YELLOW STRIPE like 8 -0.73 0.33 -0.32
129 AT5G57150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.73 0.29 -0.33
130 AT3G05360 receptor like protein 30 receptor like protein 30, receptor
like protein 30		 -0.73 0.31 -0.32