AT4G39040 : -
Query Information
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AGICode AT4G39040
Description RNA-binding CRS1 / YhbY (CRM) domain protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 1 0.31 -0.31
2 AT3G29185 Domain of unknown function (DUF3598) 0.95 0.32 -0.31
3 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.95 0.31 -0.35
4 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.94 0.32 -0.3
5 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.93 0.3 -0.33
6 AT5G53580 NAD(P)-linked oxidoreductase superfamily protein AtPLR1, pyridoxal reductase 1 0.93 0.28 -0.33
7 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.93 0.31 -0.31
8 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.93 0.32 -0.34
9 AT3G20230 Ribosomal L18p/L5e family protein 0.93 0.32 -0.32
10 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.93 0.32 -0.3
11 AT4G25080 magnesium-protoporphyrin IX methyltransferase magnesium-protoporphyrin IX
methyltransferase		 0.92 0.32 -0.32
12 AT1G18170 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.92 0.32 -0.33
13 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 42 Blast hits to 42 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.92 0.3 -0.31
14 AT5G52970 thylakoid lumen 15.0 kDa protein 0.92 0.32 -0.32
15 AT5G38520 alpha/beta-Hydrolases superfamily protein 0.92 0.31 -0.3
16 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.92 0.31 -0.31
17 AT5G46420 16S rRNA processing protein RimM family 0.92 0.31 -0.3
18 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3054 (InterPro:IPR021414);
Has 246 Blast hits to 246 proteins in 119 species: Archae -
14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).		 0.91 0.31 -0.32
19 AT5G52440 Bacterial sec-independent translocation protein mttA/Hcf106 HIGH CHLOROPHYLL FLUORESCENCE 106 0.91 0.32 -0.31
20 AT5G03940 chloroplast signal recognition particle 54 kDa subunit 54 CHLOROPLAST PROTEIN,
chloroplast signal recognition
particle 54 kDa subunit,
FIFTY-FOUR CHLOROPLAST HOMOLOGUE,
SIGNAL RECOGNITION PARTICLE 54 KDA
SUBUNIT CHLOROPLAST PROTEIN		 0.91 0.32 -0.31
21 AT1G53520 Chalcone-flavanone isomerase family protein 0.91 0.31 -0.31
22 AT3G13120 Ribosomal protein S10p/S20e family protein 0.91 0.32 -0.32
23 AT1G14270 CAAX amino terminal protease family protein 0.91 0.3 -0.29
24 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.3 -0.33
25 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.91 0.32 -0.29
26 AT4G24750 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.91 0.32 -0.29
27 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.31 -0.33
28 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.9 0.32 -0.34
29 AT3G27050 unknown protein; Has 43 Blast hits to 43 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.9 0.31 -0.31
30 AT2G35450 catalytics;hydrolases 0.9 0.31 -0.3
31 AT3G54210 Ribosomal protein L17 family protein 0.9 0.32 -0.32
32 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.33 -0.32
33 AT3G55040 glutathione transferase lambda 2 glutathione transferase lambda 2 0.9 0.3 -0.3
34 AT1G03600 photosystem II family protein PSB27 0.9 0.31 -0.32
35 AT4G14890 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 2 0.9 0.31 -0.31
36 AT3G26900 shikimate kinase like 1 Arabidopsis thaliana shikimate
kinase-like 1, shikimate
kinase-like 1		 0.9 0.31 -0.29
37 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.9 0.32 -0.3
38 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.9 0.34 -0.31
39 AT1G26220 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.9 0.33 -0.28
40 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.9 0.32 -0.32
41 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.9 0.32 -0.32
42 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.9 0.31 -0.32
43 AT5G51545 low psii accumulation2 low psii accumulation2 0.9 0.31 -0.3
44 AT3G19810 Protein of unknown function (DUF177) 0.9 0.31 -0.32
45 AT5G57030 Lycopene beta/epsilon cyclase protein LUTEIN DEFICIENT 2 0.9 0.33 -0.33
46 AT2G47910 chlororespiratory reduction 6 chlororespiratory reduction 6 0.89 0.32 -0.34
47 AT4G14870 secE/sec61-gamma protein transport protein SECE1 0.89 0.31 -0.31
48 AT5G39210 chlororespiratory reduction 7 CHLORORESPIRATORY REDUCTION 7 0.89 0.29 -0.3
49 AT1G12250 Pentapeptide repeat-containing protein 0.89 0.33 -0.33
50 AT3G20680 Domain of unknown function (DUF1995) 0.89 0.31 -0.32
51 AT2G17033 pentatricopeptide (PPR) repeat-containing protein 0.89 0.34 -0.32
52 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.89 0.3 -0.31
53 AT3G05410 Photosystem II reaction center PsbP family protein 0.89 0.3 -0.32
54 AT4G27600 pfkB-like carbohydrate kinase family protein GENES NECESSARY FOR THE
ACHIEVEMENT OF RUBISCO
ACCUMULATION 5		 0.89 0.31 -0.33
55 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.89 0.3 -0.31
56 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.89 0.31 -0.33
57 AT1G54780 thylakoid lumen 18.3 kDa protein AtTLP18.3, thylakoid lumen protein
18.3		 0.89 0.35 -0.33
58 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.89 0.33 -0.33
59 AT4G30620 Uncharacterised BCR, YbaB family COG0718 0.89 0.3 -0.32
60 AT4G19100 Protein of unknown function (DUF3464) photosynthesis affected mutant 68 0.89 0.32 -0.3
61 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.89 0.31 -0.31
62 AT1G73655 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.89 0.32 -0.3
63 AT1G78180 Mitochondrial substrate carrier family protein 0.89 0.31 -0.33
64 AT1G11860 Glycine cleavage T-protein family 0.89 0.33 -0.3
65 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.31 -0.33
66 AT3G32930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.89 0.3 -0.29
67 AT1G60600 UbiA prenyltransferase family protein ABERRANT CHLOROPLAST DEVELOPMENT 4 0.88 0.28 -0.31
68 AT4G38490 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.88 0.34 -0.32
69 AT3G23760 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; BEST Arabidopsis thaliana protein match is:
transferases, transferring glycosyl groups
(TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi -
0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.88 0.3 -0.32
70 AT3G18680 Amino acid kinase family protein 0.88 0.33 -0.31
71 AT3G28460 methyltransferases 0.88 0.31 -0.32
72 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.88 0.32 -0.33
73 AT2G33450 Ribosomal L28 family 0.88 0.32 -0.32
74 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.88 0.31 -0.28
75 AT1G32550 2Fe-2S ferredoxin-like superfamily protein ferredoxin C 1 0.88 0.31 -0.31
76 AT1G30380 photosystem I subunit K photosystem I subunit K 0.88 0.32 -0.33
77 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.88 0.33 -0.34
78 AT1G49380 cytochrome c biogenesis protein family 0.88 0.3 -0.3
79 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.32 -0.32
80 AT3G53800 Fes1B Fes1B 0.88 0.29 -0.32
81 AT4G10300 RmlC-like cupins superfamily protein 0.88 0.3 -0.31
82 AT5G02710 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240
proteins in 73 species: Archae - 10; Bacteria - 110;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink).		 0.88 0.3 -0.35
83 AT4G05090 Inositol monophosphatase family protein 0.88 0.32 -0.33
84 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 0.88 0.32 -0.32
85 AT1G23400 RNA-binding CRS1 / YhbY (CRM) domain-containing protein ARABIDOPSIS THALIANA HOMOLOG OF
MAIZE CAF2, CAF2		 0.88 0.31 -0.33
86 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.88 0.31 -0.31
87 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.88 0.31 -0.32
88 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.88 0.33 -0.31
89 AT1G14030 Rubisco methyltransferase family protein 0.88 0.31 -0.32
90 AT5G14260 Rubisco methyltransferase family protein 0.87 0.31 -0.33
91 AT2G47450 chloroplast signal recognition particle component (CAO) CHAOS, CHLOROPLAST SIGNAL
RECOGNITION PARTICLE 43		 0.87 0.31 -0.33
92 AT2G34640 plastid transcriptionally active 12 HEMERA, plastid transcriptionally
active 12		 0.87 0.31 -0.31
93 AT5G10690 pentatricopeptide (PPR) repeat-containing protein / CBS
domain-containing protein		 0.87 0.33 -0.3
94 AT4G17600 Chlorophyll A-B binding family protein LIL3:1 0.87 0.33 -0.31
95 AT1G08380 photosystem I subunit O photosystem I subunit O 0.87 0.31 -0.29
96 AT2G30695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein folding, protein transport; LOCATED IN: chloroplast
stroma, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Trigger factor, ribosome-binding, bacterial
(InterPro:IPR008881); Has 253 Blast hits to 253 proteins in
72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75
(source: NCBI BLink).		 0.87 0.31 -0.33
97 AT2G30390 ferrochelatase 2 ATFC-II, FC-II, ferrochelatase 2 0.87 0.3 -0.3
98 AT4G18370 DEGP protease 5 DEGP protease 5, DEGP PROTEASE 5,
PROTEASE HHOA PRECUSOR		 0.87 0.34 -0.3
99 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.87 0.31 -0.3
100 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.87 0.3 -0.33
101 AT5G14100 non-intrinsic ABC protein 14 ATP-binding cassette I11,
ARABIDOPSIS THALIANANON-INTRINSIC
ABC PROTEIN 14, non-intrinsic ABC
protein 14		 0.87 0.3 -0.32
102 AT1G45474 photosystem I light harvesting complex gene 5 photosystem I light harvesting
complex gene 5		 0.87 0.3 -0.31
103 AT5G66470 RNA binding;GTP binding 0.87 0.31 -0.29
104 AT1G60990 Glycine cleavage T-protein family 0.87 0.31 -0.3
105 AT3G24430 ATP binding HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.87 0.31 -0.31
106 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.87 0.33 -0.34
107 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.87 0.31 -0.29
108 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.32 -0.32
109 AT3G10500 NAC domain containing protein 53 NAC domain containing protein 53,
NAC domain containing protein 53		 -0.85 0.32 -0.34
110 AT2G47000 ATP binding cassette subfamily B4 ATP-binding cassette B4,
ARABIDOPSIS P-GLYCOPROTEIN 4,
MULTIDRUG RESISTANCE 4,
P-GLYCOPROTEIN 4		 -0.78 0.35 -0.31
111 AT5G53760 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 11,
MILDEW RESISTANCE LOCUS O 11		 -0.78 0.31 -0.33
112 AT4G20830 FAD-binding Berberine family protein -0.77 0.32 -0.34
113 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.77 0.32 -0.31
114 AT3G29310 calmodulin-binding protein-related -0.77 0.31 -0.31
115 AT1G17180 glutathione S-transferase TAU 25 glutathione S-transferase TAU 25,
glutathione S-transferase TAU 25		 -0.75 0.32 -0.31
116 AT2G24570 WRKY DNA-binding protein 17 ATWRKY17, WRKY DNA-binding protein
17		 -0.75 0.32 -0.31
117 AT3G47780 ABC2 homolog 6 ATP-binding cassette A7, A.
THALIANA ABC2 HOMOLOG 6, ABC2
homolog 6		 -0.75 0.31 -0.32
118 AT4G29690 Alkaline-phosphatase-like family protein -0.74 0.3 -0.31
119 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.73 0.33 -0.31
120 AT3G08720 serine/threonine protein kinase 2 Arabidopsis thaliana protein
kinase 19, ARABIDOPSIS THALIANA
PROTEIN KINASE 2, ARABIDOPSIS
THALIANA SERINE/THREONINE PROTEIN
KINASE 2, serine/threonine protein
kinase 2		 -0.72 0.34 -0.31
121 AT3G25250 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 AGC2, AGC2-1, AtOXI1, oxidative
signal-inducible1		 -0.71 0.32 -0.32
122 AT5G13320 Auxin-responsive GH3 family protein GH3-LIKE DEFENSE GENE 1, GRETCHEN
HAGEN 3.12, AVRPPHB SUSCEPTIBLE 3,
HOPW1-1-INTERACTING 3		 -0.7 0.32 -0.32
123 AT5G63930 Leucine-rich repeat protein kinase family protein -0.7 0.33 -0.3
124 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.7 0.31 -0.31
125 AT3G25585 aminoalcoholphosphotransferase aminoalcoholphosphotransferase,
ATAAPT2		 -0.69 0.32 -0.35
126 AT3G48850 phosphate transporter 3;2 phosphate transporter 3;2 -0.69 0.3 -0.29
127 AT5G10830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.69 0.32 -0.34
128 AT4G11670 Protein of unknown function (DUF810) -0.69 0.33 -0.32
129 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.68 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0241 Stigmasterol 3-O-β-D-glucoside - Stigmasterol 3-O-β-D-glucoside - -0.79 0.47 -0.49 C0241