AT4G38460 : geranylgeranyl reductase
Query Information
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AGICode AT4G38460
Description geranylgeranyl reductase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G38460 geranylgeranyl reductase geranylgeranyl reductase 1 0.3 -0.31
2 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 0.83 0.3 -0.33
3 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 0.83 0.33 -0.33
4 AT1G02305 Cysteine proteinases superfamily protein 0.82 0.31 -0.31
5 AT5G39730 AIG2-like (avirulence induced gene) family protein 0.82 0.29 -0.32
6 AT1G18720 Protein of unknown function (DUF962) 0.81 0.33 -0.3
7 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2		 0.8 0.3 -0.32
8 AT5G43940 GroES-like zinc-binding dehydrogenase family protein ALCOHOL DEHYDROGENASE 2, ATGSNOR1,
S-NITROSOGLUTATHIONE REDUCTASE,
sensitive to hot temperatures 5,
PARAQUAT RESISTANT 2		 0.8 0.33 -0.31
9 AT3G52880 monodehydroascorbate reductase 1 monodehydroascorbate reductase 1,
monodehydroascorbate reductase 1		 0.79 0.32 -0.33
10 AT1G12050 fumarylacetoacetase, putative 0.78 0.31 -0.33
11 AT5G49650 xylulose kinase-2 xylulose kinase-2, XYLULOSE KINASE
2		 0.78 0.32 -0.32
12 AT3G23600 alpha/beta-Hydrolases superfamily protein 0.78 0.33 -0.32
13 AT2G11910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to
31060 proteins in 1576 species: Archae - 765; Bacteria -
32670; Metazoa - 21164; Fungi - 12252; Plants - 4238;
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI
BLink).		 -0.78 0.32 -0.33
14 AT1G01800 NAD(P)-binding Rossmann-fold superfamily protein 0.78 0.33 -0.34
15 AT1G21410 F-box/RNI-like superfamily protein SKP2A 0.77 0.31 -0.33
16 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY		 0.77 0.33 -0.32
17 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.77 0.31 -0.31
18 AT1G27530 CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating
enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold
modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269
Blast hits to 269 proteins in 110 species: Archae - 0;
Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42;
Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).		 0.77 0.31 -0.32
19 AT1G11910 aspartic proteinase A1 aspartic proteinase A1, ATAPA1 0.77 0.31 -0.3
20 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.76 0.3 -0.3
21 AT1G48320 Thioesterase superfamily protein 0.76 0.29 -0.32
22 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 0.76 0.32 -0.31
23 AT5G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits
to 136 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.3 -0.29
24 AT1G21770 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.76 0.32 -0.32
25 AT5G58740 HSP20-like chaperones superfamily protein 0.76 0.32 -0.32
26 AT3G51430 Calcium-dependent phosphotriesterase superfamily protein STRICTOSIDINE SYNTHASE-LIKE 5,
YELLOW-LEAF-SPECIFIC GENE 2		 0.76 0.3 -0.31
27 AT3G54360 zinc ion binding 0.76 0.33 -0.33
28 AT2G23090 Uncharacterised protein family SERF 0.75 0.32 -0.3
29 AT1G73040 Mannose-binding lectin superfamily protein 0.75 0.32 -0.31
30 AT5G14780 formate dehydrogenase formate dehydrogenase 0.75 0.32 -0.31
31 AT3G58170 BET1P/SFT1P-like protein 14A ATBET11, ARABIDOPSIS THALIANA
BET1P/SFT1P-LIKE PROTEIN 14A,
BET11, BET1P/SFT1P-like protein
14A		 0.75 0.31 -0.32
32 AT5G18620 chromatin remodeling factor17 chromatin remodeling factor17 -0.75 0.33 -0.32
33 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 0.74 0.3 -0.29
34 AT3G58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit
/ vacuolar proton pump D subunit (VATPD)		 0.74 0.3 -0.32
35 AT5G08380 alpha-galactosidase 1 alpha-galactosidase 1,
alpha-galactosidase 1		 0.74 0.32 -0.32
36 AT5G02790 Glutathione S-transferase family protein Glutathione transferase L3 0.74 0.3 -0.32
37 AT3G01520 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.74 0.31 -0.3
38 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.74 0.32 -0.31
39 AT5G45350 proline-rich family protein 0.73 0.31 -0.33
40 AT3G62580 Late embryogenesis abundant protein (LEA) family protein 0.73 0.3 -0.33
41 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.3 -0.3
42 AT5G56180 actin-related protein 8 ARP8, actin-related protein 8,
actin-related protein 8		 0.73 0.31 -0.32
43 AT5G41210 glutathione S-transferase THETA 1 glutathione S-transferase THETA 1,
GST10, glutathione S-transferase
THETA 1		 0.73 0.33 -0.3
44 AT3G28940 AIG2-like (avirulence induced gene) family protein 0.72 0.32 -0.34
45 AT1G79230 mercaptopyruvate sulfurtransferase 1 ATMST1, ARABIDOPSIS THALIANA
RHODANESE HOMOLOGUE 1,
mercaptopyruvate sulfurtransferase
1, SULFURTRANSFERASE 1, STR1		 0.72 0.35 -0.31
46 AT3G21110 purin 7 ATPURC, purin 7, PURIN C -0.72 0.32 -0.3
47 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 0.72 0.33 -0.31
48 AT2G35840 Sucrose-6F-phosphate phosphohydrolase family protein 0.72 0.31 -0.31
49 AT1G47960 cell wall / vacuolar inhibitor of fructosidase 1 CELL WALL / VACUOLAR INHIBITOR OF
FRUCTOSIDASE 1, cell wall /
vacuolar inhibitor of fructosidase
1		 0.72 0.31 -0.32
50 AT5G55480 SHV3-like 1 Glycerophosphodiester
phosphodiesterase (GDPD) like 4,
glycerophosphodiesterase-like 1,
SHV3-like 1		 -0.72 0.33 -0.34
51 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A 0.72 0.31 -0.32
52 AT1G04520 plasmodesmata-located protein 2 plasmodesmata-located protein 2 -0.72 0.3 -0.31
53 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.72 0.3 -0.32
54 AT3G13570 SC35-like splicing factor 30A SC35-like splicing factor 30A,
SC35-like splicing factor 30A		 -0.71 0.3 -0.34
55 AT5G04080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 9 growth stages; Has 115 Blast hits to 115 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.71 0.33 -0.32
56 AT4G14880 O-acetylserine (thiol) lyase (OAS-TL) isoform A1 ATCYS-3A, CYTACS1, O-acetylserine
(thiol) lyase (OAS-TL) isoform A1,
ONSET OF LEAF DEATH 3		 0.71 0.31 -0.32
57 AT2G30550 alpha/beta-Hydrolases superfamily protein 0.71 0.32 -0.33
58 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 0.71 0.33 -0.31
59 AT4G14020 Rapid alkalinization factor (RALF) family protein 0.71 0.29 -0.33
60 AT5G20900 jasmonate-zim-domain protein 12 jasmonate-zim-domain protein 12,
TIFY3B		 0.71 0.33 -0.33
61 AT5G57330 Galactose mutarotase-like superfamily protein 0.71 0.3 -0.31
62 AT2G36970 UDP-Glycosyltransferase superfamily protein 0.71 0.32 -0.32
63 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 0.71 0.29 -0.31
64 AT3G51890 Clathrin light chain protein 0.71 0.31 -0.32
65 AT3G03470 cytochrome P450, family 87, subfamily A, polypeptide 9 cytochrome P450, family 87,
subfamily A, polypeptide 9		 0.71 0.32 -0.31
66 AT5G14600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.3 -0.32
67 AT3G28950 AIG2-like (avirulence induced gene) family protein 0.71 0.32 -0.31
68 AT5G45780 Leucine-rich repeat protein kinase family protein -0.7 0.32 -0.3
69 AT1G04990 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.7 0.3 -0.35
70 AT2G34700 Pollen Ole e 1 allergen and extensin family protein -0.7 0.32 -0.32
71 AT5G57120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleolus;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: LisH
dimerisation motif (InterPro:IPR006594), SRP40, C-terminal
(InterPro:IPR007718); Has 101969 Blast hits to 55488
proteins in 2506 species: Archae - 424; Bacteria - 13843;
Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses -
569; Other Eukaryotes - 34792 (source: NCBI BLink).		 -0.7 0.32 -0.33
72 AT4G29820 homolog of CFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF
CFIM-25, homolog of CFIM-25		 0.69 0.3 -0.34
73 AT3G10310 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain		 -0.69 0.32 -0.31
74 AT1G49760 poly(A) binding protein 8 poly(A) binding protein 8, POLY(A)
BINDING PROTEIN 8		 -0.69 0.31 -0.31
75 AT3G08840 D-alanine--D-alanine ligase family 0.69 0.3 -0.29
76 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 0.69 0.31 -0.31
77 AT4G27480 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.69 0.3 -0.32
78 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 0.69 0.32 -0.29
79 AT5G54940 Translation initiation factor SUI1 family protein 0.69 0.31 -0.31
80 AT1G55000 peptidoglycan-binding LysM domain-containing protein 0.69 0.31 -0.33
81 AT3G11830 TCP-1/cpn60 chaperonin family protein -0.69 0.3 -0.31
82 AT1G02816 Protein of unknown function, DUF538 0.68 0.3 -0.3
83 AT5G65760 Serine carboxypeptidase S28 family protein 0.68 0.32 -0.31
84 AT5G13100 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.68 0.31 -0.31
85 AT1G20220 Alba DNA/RNA-binding protein -0.68 0.3 -0.3
86 AT1G77550 tubulin-tyrosine ligases;tubulin-tyrosine ligases -0.68 0.32 -0.3
87 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE -0.68 0.32 -0.3
88 AT5G03080 Phosphatidic acid phosphatase (PAP2) family protein 0.68 0.3 -0.3
89 AT5G10240 asparagine synthetase 3 asparagine synthetase 3 -0.67 0.28 -0.33
90 AT5G18820 TCP-1/cpn60 chaperonin family protein chaperonin-60alpha2, embryo
defective 3007		 -0.67 0.33 -0.29
91 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 -0.67 0.31 -0.32
92 AT1G29090 Cysteine proteinases superfamily protein -0.66 0.33 -0.32
93 AT4G14200 Pentatricopeptide repeat (PPR) superfamily protein -0.66 0.33 -0.34
94 AT5G58300 Leucine-rich repeat protein kinase family protein -0.65 0.33 -0.31
95 AT3G05990 Leucine-rich repeat (LRR) family protein -0.65 0.31 -0.31
96 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 -0.65 0.32 -0.35
97 AT3G56870 unknown protein; Has 204 Blast hits to 201 proteins in 58
species: Archae - 0; Bacteria - 10; Metazoa - 72; Fungi -
8; Plants - 41; Viruses - 0; Other Eukaryotes - 73 (source:
NCBI BLink).		 -0.64 0.35 -0.32
98 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein EMBRYO DEFECTIVE 2777 -0.64 0.32 -0.33
99 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 -0.64 0.32 -0.32
100 AT2G21800 essential meiotic endonuclease 1A essential meiotic endonuclease 1A,
EME1A, essential meiotic
endonuclease 1A		 -0.64 0.31 -0.3
101 AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative -0.64 0.32 -0.33
102 AT3G10690 DNA GYRASE A DNA GYRASE A -0.64 0.33 -0.33
103 AT3G11964 RNA binding;RNA binding -0.64 0.27 -0.31
104 AT5G22740 cellulose synthase-like A02 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE-LIKE A02, ARABIDOPSIS
THALIANA CELLULOSE SYNTHASE-LIKE
A2, cellulose synthase-like A02,
CELLULOSE SYNTHASE-LIKE A 2		 -0.63 0.33 -0.31
105 AT4G26300 Arginyl-tRNA synthetase, class Ic embryo defective 1027 -0.63 0.29 -0.31
106 AT2G35770 serine carboxypeptidase-like 28 serine carboxypeptidase-like 28 -0.62 0.31 -0.3
107 AT5G64950 Mitochondrial transcription termination factor family
protein		 -0.62 0.33 -0.31
108 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.31 -0.31
109 AT1G71060 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.31 -0.32
110 AT5G14440 Surfeit locus protein 2 (SURF2) -0.62 0.31 -0.3
111 AT4G23750 cytokinin response factor 2 cytokinin response factor 2,
TARGET OF MONOPTEROS 3		 -0.62 0.31 -0.33
112 AT2G33690 Late embryogenesis abundant protein, group 6 -0.62 0.31 -0.33
113 AT1G09660 RNA-binding KH domain-containing protein -0.61 0.31 -0.33
114 AT1G07970 CONTAINS InterPro DOMAIN/s: Cytochrome B561-related,
N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213
proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa -
131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink).		 -0.61 0.35 -0.32
115 AT2G21710 Mitochondrial transcription termination factor family
protein		 embryo defective 2219 -0.61 0.29 -0.31
116 AT4G22970 homolog of separase homolog of separase, homolog of
separase, SEPARASE, RADIALLY
SWOLLEN 4		 -0.61 0.31 -0.29
117 AT3G13020 hAT transposon superfamily protein -0.61 0.33 -0.3
118 AT2G16940 Splicing factor, CC1-like -0.61 0.33 -0.3
119 AT2G19380 RNA recognition motif (RRM)-containing protein -0.6 0.33 -0.32
120 AT1G72560 ARM repeat superfamily protein PAUSED -0.6 0.32 -0.34
121 AT2G39230 LATERAL ORGAN JUNCTION LATERAL ORGAN JUNCTION -0.6 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0248 Sulfoquinovosyldiacylglycerol-36:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.69 0.52 -0.51 C0248