AT4G35850 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G35850
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G35850 Pentatricopeptide repeat (PPR) superfamily protein 1 0.31 -0.32
2 AT1G14620 decoy DECOY 0.87 0.31 -0.3
3 AT1G19715 Mannose-binding lectin superfamily protein -0.83 0.32 -0.32
4 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 0.81 0.33 -0.33
5 AT5G02050 Mitochondrial glycoprotein family protein 0.81 0.33 -0.31
6 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.78 0.31 -0.34
7 AT4G31810 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.78 0.3 -0.3
8 AT5G22790 reticulata-related 1 reticulata-related 1 0.78 0.31 -0.32
9 AT3G01790 Ribosomal protein L13 family protein 0.78 0.31 -0.31
10 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.77 0.32 -0.34
11 AT2G01140 Aldolase superfamily protein PIGMENT DEFECTIVE 345 0.77 0.31 -0.32
12 AT1G73940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits
to 54 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.3 -0.3
13 AT2G35790 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1301 (InterPro:IPR009724); Has 116
Blast hits to 116 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.76 0.3 -0.32
14 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 0.76 0.31 -0.3
15 AT2G34080 Cysteine proteinases superfamily protein 0.76 0.31 -0.31
16 AT3G57550 guanylate kinase guanylate kinase, GUANYLATE KINAS
2		 0.76 0.33 -0.32
17 AT5G17330 glutamate decarboxylase glutamate decarboxylase, GLUTAMATE
DECARBOXYLASE 1		 0.76 0.29 -0.33
18 AT2G31390 pfkB-like carbohydrate kinase family protein 0.76 0.3 -0.32
19 AT2G16060 hemoglobin 1 hemoglobin 1, ARATH GLB1, ATGLB1,
CLASS I HEMOGLOBIN, hemoglobin 1,
NSHB1		 0.75 0.33 -0.3
20 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 0.75 0.32 -0.3
21 AT1G74030 enolase 1 enolase 1 0.75 0.3 -0.34
22 AT4G02930 GTP binding Elongation factor Tu family protein 0.75 0.33 -0.33
23 AT5G43060 Granulin repeat cysteine protease family protein 0.75 0.31 -0.32
24 AT3G18760 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.74 0.28 -0.34
25 AT4G27270 Quinone reductase family protein 0.74 0.33 -0.31
26 AT5G58140 phototropin 2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE,
phototropin 2		 -0.74 0.32 -0.31
27 AT1G19835 Plant protein of unknown function (DUF869) -0.74 0.32 -0.31
28 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 0.74 0.33 -0.35
29 AT2G21045 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.73 0.33 -0.3
30 AT3G15357 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: shoot apex,
hypocotyl, root, leaf; Has 6931 Blast hits to 2036 proteins
in 230 species: Archae - 7; Bacteria - 933; Metazoa - 1824;
Fungi - 836; Plants - 482; Viruses - 218; Other Eukaryotes
- 2631 (source: NCBI BLink).		 0.73 0.31 -0.31
31 AT1G60590 Pectin lyase-like superfamily protein -0.73 0.32 -0.34
32 AT1G11580 methylesterase PCR A ATPMEPCRA, methylesterase PCR A 0.73 0.34 -0.3
33 AT1G29280 WRKY DNA-binding protein 65 WRKY DNA-BINDING PROTEIN 65, WRKY
DNA-binding protein 65		 0.73 0.31 -0.31
34 AT4G01100 adenine nucleotide transporter 1 adenine nucleotide transporter 1 0.72 0.33 -0.33
35 AT5G11060 KNOTTED1-like homeobox gene 4 KNOTTED1-like homeobox gene 4 -0.72 0.31 -0.29
36 AT2G14900 Gibberellin-regulated family protein 0.72 0.34 -0.32
37 AT4G02630 Protein kinase superfamily protein -0.72 0.31 -0.31
38 AT4G10180 light-mediated development protein 1 / deetiolated1 (DET1) ATDET1, DE-ETIOLATED 1, FUSCA 2 -0.72 0.32 -0.3
39 AT4G33360 NAD(P)-binding Rossmann-fold superfamily protein farnesol dehydrogenase 0.72 0.31 -0.32
40 AT1G07210 Ribosomal protein S18 0.72 0.3 -0.33
41 AT1G26150 proline-rich extensin-like receptor kinase 10 proline-rich extensin-like
receptor kinase 10, proline-rich
extensin-like receptor kinase 10		 -0.71 0.32 -0.33
42 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 0.71 0.32 -0.3
43 AT5G15880 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.71 0.3 -0.3
44 AT2G46740 D-arabinono-1,4-lactone oxidase family protein 0.71 0.31 -0.32
45 AT5G02260 expansin A9 ATEXP9, expansin A9, ATHEXP ALPHA
1.10, EXP9, expansin A9		 0.7 0.31 -0.33
46 AT5G12410 THUMP domain-containing protein 0.7 0.33 -0.32
47 AT1G70190 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein
L7/L12, C-terminal/adaptor protein ClpS-like		 0.7 0.31 -0.31
48 AT5G61880 Protein Transporter, Pam16 0.7 0.29 -0.3
49 AT1G09460 Carbohydrate-binding X8 domain superfamily protein 0.7 0.32 -0.3
50 AT4G22930 pyrimidin 4 DIHYDROOROTASE, pyrimidin 4 0.7 0.31 -0.33
51 ATCG00570 photosystem II reaction center protein F photosystem II reaction center
protein F		 -0.7 0.32 -0.3
52 AT2G17440 plant intracellular ras group-related LRR 5 plant intracellular ras
group-related LRR 5		 0.7 0.32 -0.32
53 AT3G08020 PHD finger family protein -0.7 0.32 -0.32
54 AT5G09770 Ribosomal protein L17 family protein 0.7 0.33 -0.3
55 AT5G37740 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.7 0.31 -0.31
56 ATCG00780 ribosomal protein L14 ribosomal protein L14 -0.7 0.3 -0.3
57 AT1G24095 Putative thiol-disulphide oxidoreductase DCC 0.7 0.31 -0.31
58 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 0.7 0.31 -0.32
59 AT5G13420 Aldolase-type TIM barrel family protein 0.7 0.3 -0.31
60 AT3G22380 time for coffee TIME FOR COFFEE -0.7 0.33 -0.33
61 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.7 0.31 -0.33
62 AT1G73180 Eukaryotic translation initiation factor eIF2A family
protein		 0.69 0.31 -0.33
63 AT5G06530 ABC-2 type transporter family protein ATP-binding cassette G22,
Arabidopsis thaliana ATP-binding
cassette G22		 -0.69 0.3 -0.32
64 AT3G15640 Rubredoxin-like superfamily protein 0.69 0.3 -0.32
65 AT1G67440 Minichromosome maintenance (MCM2/3/5) family protein embryo defective 1688 -0.69 0.31 -0.32
66 AT1G49390 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.32 -0.33
67 AT5G27730 Protein of unknown function (DUF1624) -0.69 0.31 -0.34
68 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 0.69 0.33 -0.29
69 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.69 0.32 -0.32
70 AT1G12330 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in
27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi -
14; Plants - 217; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.69 0.33 -0.31
71 AT2G42910 Phosphoribosyltransferase family protein 0.69 0.3 -0.29
72 AT1G62250 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 15 growth stages; Has
30 Blast hits to 30 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.31 -0.3
73 AT2G35120 Single hybrid motif superfamily protein 0.69 0.32 -0.3
74 AT3G17920 Outer arm dynein light chain 1 protein -0.69 0.36 -0.31
75 AT1G76620 Protein of unknown function, DUF547 -0.69 0.32 -0.31
76 AT5G60640 PDI-like 1-4 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 2, PDI-like
1-4, PROTEIN DISULFIDE ISOMERASE
2, PDI-like 1-4		 0.69 0.31 -0.34
77 AT3G18500 DNAse I-like superfamily protein -0.69 0.32 -0.33
78 AT3G52930 Aldolase superfamily protein 0.68 0.29 -0.31
79 AT1G19360 Nucleotide-diphospho-sugar transferase family protein reduced residual arabinose 3 0.68 0.32 -0.3
80 AT2G44270 repressor of lrx1 repressor of lrx1 0.68 0.32 -0.33
81 AT1G66620 Protein with RING/U-box and TRAF-like domains 0.68 0.31 -0.31
82 AT3G56080 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.68 0.3 -0.32
83 AT4G11120 translation elongation factor Ts (EF-Ts), putative 0.68 0.3 -0.32
84 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1		 -0.68 0.31 -0.33
85 AT3G22104 Phototropic-responsive NPH3 family protein -0.68 0.33 -0.31
86 AT3G18930 RING/U-box superfamily protein -0.68 0.3 -0.33
87 AT3G16480 mitochondrial processing peptidase alpha subunit mitochondrial processing peptidase
alpha subunit		 0.68 0.32 -0.33
88 AT3G23340 casein kinase I-like 10 casein kinase I-like 10 -0.68 0.31 -0.28
89 AT4G22720 Actin-like ATPase superfamily protein 0.68 0.31 -0.3
90 AT4G08980 F-BOX WITH WD-40 2 F-BOX WITH WD-40 2 -0.68 0.32 -0.32
91 AT4G12550 Auxin-Induced in Root cultures 1 Auxin-Induced in Root cultures 1 0.68 0.33 -0.3
92 AT2G43610 Chitinase family protein 0.68 0.32 -0.31
93 AT1G01440 Protein of unknown function (DUF3133) -0.67 0.31 -0.32
94 AT3G05030 sodium hydrogen exchanger 2 ATNHX2, sodium hydrogen exchanger
2		 -0.67 0.33 -0.31
95 AT1G64190 6-phosphogluconate dehydrogenase family protein 0.67 0.31 -0.31
96 ATCG00530 CemA-like proton extrusion protein-related YCF10 -0.67 0.33 -0.32
97 AT5G57610 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.67 0.34 -0.31
98 AT3G12700 Eukaryotic aspartyl protease family protein 0.67 0.33 -0.31
99 AT1G19330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits
to 145 proteins in 43 species: Archae - 0; Bacteria - 0;
Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.67 0.32 -0.31
100 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 -0.67 0.3 -0.32
101 AT1G12990 beta-1,4-N-acetylglucosaminyltransferase family protein -0.66 0.33 -0.31
102 AT1G29700 Metallo-hydrolase/oxidoreductase superfamily protein -0.66 0.31 -0.32
103 AT1G11410 S-locus lectin protein kinase family protein -0.66 0.32 -0.33
104 AT1G02300 Cysteine proteinases superfamily protein -0.66 0.31 -0.32
105 ATCG00480 ATP synthase subunit beta ATP synthase subunit beta, ATP
synthase subunit beta		 -0.65 0.34 -0.29
106 AT2G28810 Dof-type zinc finger DNA-binding family protein -0.65 0.31 -0.33
107 AT4G21940 calcium-dependent protein kinase 15 calcium-dependent protein kinase
15		 -0.65 0.31 -0.33
108 AT4G00490 beta-amylase 2 beta-amylase 2, BETA-AMYLASE 9 -0.65 0.33 -0.34
109 AT3G15400 anther 20 anther 20 -0.65 0.3 -0.32
110 AT1G52870 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein -0.65 0.31 -0.33
111 ATCG01050 NADH-Ubiquinone/plastoquinone (complex I) protein NDHD -0.65 0.31 -0.31
112 AT1G76020 Thioredoxin superfamily protein -0.65 0.32 -0.33
113 AT1G71050 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 20		 -0.65 0.33 -0.31
114 AT2G22190 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
E		 -0.65 0.32 -0.31
115 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.64 0.34 -0.32
116 AT5G16540 zinc finger nuclease 3 zinc finger nuclease 3 -0.64 0.32 -0.3
117 AT4G34650 squalene synthase 2 squalene synthase 2 -0.64 0.29 -0.35
118 ATCG00420 NADH dehydrogenase subunit J NADH dehydrogenase subunit J -0.64 0.33 -0.3
119 AT3G61250 myb domain protein 17 myb domain protein 17, LATE
MERISTEM IDENTITY2, myb domain
protein 17		 -0.64 0.3 -0.3
120 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.29 -0.33
121 AT3G51950 Zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 -0.64 0.32 -0.31
122 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.64 0.31 -0.32
123 AT2G46180 golgin candidate 4 golgin candidate 4 -0.64 0.33 -0.29
124 AT1G72650 TRF-like 6 TRF-like 6 -0.64 0.33 -0.31
125 AT1G33400 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 9 -0.64 0.31 -0.31
126 AT2G26330 Leucine-rich receptor-like protein kinase family protein ERECTA, QUANTITATIVE RESISTANCE TO
PLECTOSPHAERELLA 1		 -0.63 0.32 -0.32
127 AT1G07280 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.3 -0.3
128 AT4G08920 cryptochrome 1 ATCRY1, BLUE LIGHT UNINHIBITED 1,
cryptochrome 1, ELONGATED
HYPOCOTYL 4, OUT OF PHASE 2		 -0.63 0.32 -0.35
129 AT1G67840 chloroplast sensor kinase chloroplast sensor kinase -0.63 0.3 -0.3
130 AT3G02830 zinc finger protein 1 zinc finger protein 1 -0.63 0.31 -0.32
131 ATCG00120 ATP synthase subunit alpha ATP synthase subunit alpha -0.63 0.32 -0.3
132 AT5G67030 zeaxanthin epoxidase (ZEP) (ABA1) ABA DEFICIENT 1, ARABIDOPSIS
THALIANA ABA DEFICIENT 1,
ARABIDOPSIS THALIANA ZEAXANTHIN
EPOXIDASE, IMPAIRED IN
BABA-INDUCED STERILITY 3, LOW
EXPRESSION OF OSMOTIC
STRESS-RESPONSIVE GENES 6,
NON-PHOTOCHEMICAL QUENCHING 2,
ZEAXANTHIN EPOXIDASE		 -0.63 0.34 -0.31
133 ATCG00690 photosystem II reaction center protein T photosystem II reaction center
protein T, PSBTC		 -0.63 0.32 -0.31
134 AT5G53660 growth-regulating factor 7 growth-regulating factor 7,
growth-regulating factor 7		 -0.62 0.32 -0.28
135 AT1G01790 K+ efflux antiporter 1 K+ EFFLUX ANTIPORTER 1, K+ efflux
antiporter 1		 -0.62 0.29 -0.3
136 AT1G16500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits
to 134 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.35 -0.32
137 AT3G29320 Glycosyl transferase, family 35 alpha-glucan phosphorylase 1 -0.62 0.31 -0.32
138 AT1G70900 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23110.4); Has 57 Blast hits
to 57 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.33 -0.32
139 AT5G61290 Flavin-binding monooxygenase family protein -0.62 0.31 -0.35
140 ATCG00580 photosystem II reaction center protein E photosystem II reaction center
protein E		 -0.62 0.32 -0.3
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
141 C0266 Xylose D-Xylose D-Xylose xylose degradation I -0.81 0.42 -0.42 C0266