AT4G36020 : cold shock domain protein 1
Query Information
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AGICode AT4G36020
Description cold shock domain protein 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G36020 cold shock domain protein 1 cold shock domain protein 1 1 0.32 -0.31
2 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.83 0.35 -0.29
3 AT1G15740 Leucine-rich repeat family protein -0.83 0.34 -0.33
4 AT4G15770 RNA binding 0.83 0.32 -0.32
5 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.81 0.31 -0.31
6 AT1G75670 DNA-directed RNA polymerases 0.8 0.32 -0.31
7 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 0.8 0.32 -0.32
8 AT1G52930 Ribosomal RNA processing Brix domain protein 0.79 0.31 -0.32
9 AT2G25590 Plant Tudor-like protein -0.79 0.3 -0.32
10 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.78 0.3 -0.32
11 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.78 0.29 -0.31
12 AT5G16930 AAA-type ATPase family protein 0.78 0.31 -0.32
13 AT5G20180 Ribosomal protein L36 0.78 0.31 -0.32
14 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.78 0.31 -0.31
15 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.78 0.3 -0.31
16 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.77 0.33 -0.32
17 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.77 0.32 -0.32
18 AT1G43860 sequence-specific DNA binding transcription factors 0.77 0.31 -0.31
19 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.3 -0.32
20 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.77 0.3 -0.32
21 AT3G55605 Mitochondrial glycoprotein family protein 0.77 0.3 -0.33
22 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.77 0.32 -0.32
23 AT2G44510 CDK inhibitor P21 binding protein 0.77 0.33 -0.33
24 AT1G61870 pentatricopeptide repeat 336 pentatricopeptide repeat 336 0.77 0.32 -0.32
25 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.76 0.3 -0.31
26 AT3G57360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits
to 122 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.76 0.31 -0.31
27 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.76 0.34 -0.3
28 AT1G61570 translocase of the inner mitochondrial membrane 13 translocase of the inner
mitochondrial membrane 13		 0.76 0.31 -0.32
29 AT3G02190 Ribosomal protein L39 family protein 0.76 0.32 -0.29
30 AT4G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.32 -0.29
31 AT5G50315 transposable element gene 0.75 0.3 -0.29
32 AT1G73920 alpha/beta-Hydrolases superfamily protein -0.75 0.33 -0.29
33 AT5G18400 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S
biogenesis		 0.75 0.31 -0.33
34 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.75 0.31 -0.31
35 AT5G06660 Protein of unknown function DUF106, transmembrane 0.75 0.3 -0.34
36 AT5G24570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.75 0.32 -0.36
37 AT1G64220 translocase of outer membrane 7 kDa subunit 2 translocase of outer membrane 7
kDa subunit 2		 0.75 0.31 -0.31
38 AT5G12220 las1-like family protein 0.74 0.29 -0.32
39 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.74 0.32 -0.32
40 AT3G25970 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.31 -0.3
41 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.74 0.32 -0.31
42 AT3G26580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.74 0.3 -0.31
43 AT5G44110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette A21,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN, ATPOP1, POP1		 0.74 0.31 -0.33
44 AT3G02320 N2,N2-dimethylguanosine tRNA methyltransferase 0.74 0.34 -0.31
45 AT1G62730 Terpenoid synthases superfamily protein 0.74 0.31 -0.32
46 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.74 0.31 -0.31
47 AT3G52930 Aldolase superfamily protein 0.73 0.32 -0.29
48 AT4G05440 temperature sensing protein-related embryo sac development arrest 35 0.73 0.31 -0.31
49 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.73 0.31 -0.31
50 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.73 0.3 -0.31
51 AT1G22730 MA3 domain-containing protein 0.72 0.31 -0.31
52 AT5G02270 non-intrinsic ABC protein 9 ATP-binding cassette I20,
ARABIDOPSIS THALIANA NON-INTRINSIC
ABC PROTEIN 9, non-intrinsic ABC
protein 9		 0.72 0.32 -0.33
53 AT4G24740 FUS3-complementing gene 2 FUS3-complementing gene 2, AME1,
FUS3-complementing gene 2		 -0.72 0.33 -0.32
54 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.3 -0.3
55 AT1G48430 Dihydroxyacetone kinase -0.71 0.34 -0.29
56 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.71 0.32 -0.31
57 AT4G04950 thioredoxin family protein Arabidopsis thaliana monothiol
glutaredoxin 17, monothiol
glutaredoxin 17		 0.71 0.33 -0.31
58 AT1G59830 protein phosphatase 2A-2 protein phosphatase 2A-2 0.71 0.32 -0.31
59 AT1G69350 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.32 -0.32
60 AT5G44370 phosphate transporter 4;6 phosphate transporter 4;6 0.71 0.32 -0.31
61 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.71 0.31 -0.29
62 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.71 0.31 -0.33
63 AT4G36680 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.32 -0.3
64 AT3G59090 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana
protein match is: tobamovirus multiplication 1
(TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in
29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 -0.71 0.31 -0.33
65 AT4G00090 Transducin/WD40 repeat-like superfamily protein 0.71 0.3 -0.33
66 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 0.71 0.31 -0.33
67 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein 0.71 0.32 -0.35
68 AT3G26890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G41110.1); Has 393 Blast hits
to 383 proteins in 134 species: Archae - 0; Bacteria - 61;
Metazoa - 171; Fungi - 74; Plants - 80; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.7 0.32 -0.3
69 AT1G76110 HMG (high mobility group) box protein with ARID/BRIGHT
DNA-binding domain		 -0.7 0.33 -0.31
70 AT1G26580 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: ELM2 domain-containing protein
(TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.32 -0.32
71 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.7 0.3 -0.31
72 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.69 0.29 -0.31
73 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.69 0.33 -0.32
74 AT3G09410 Pectinacetylesterase family protein -0.69 0.29 -0.32
75 AT1G48300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87
proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa -
12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes -
15 (source: NCBI BLink).		 -0.69 0.34 -0.3
76 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.68 0.32 -0.31
77 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.68 0.32 -0.31
78 AT1G27690 Protein of unknown function (DUF620) -0.68 0.3 -0.33
79 AT5G25630 Tetratricopeptide repeat (TPR)-like superfamily protein -0.68 0.31 -0.31
80 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.68 0.32 -0.29
81 AT1G08570 atypical CYS HIS rich thioredoxin 4 atypical CYS HIS rich thioredoxin
4		 -0.67 0.31 -0.31
82 AT1G48840 Plant protein of unknown function (DUF639) -0.66 0.31 -0.32
83 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.33 -0.31
84 AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase pyridoxin (pyrodoxamine)
5'-phosphate oxidase, HOMOLOG OF
YEAST PYRIDOXINE AUXOTROPHY 3,
pyridoxin (pyrodoxamine)
5'-phosphate oxidase		 -0.65 0.32 -0.32
85 AT2G42750 DNAJ heat shock N-terminal domain-containing protein -0.64 0.3 -0.28
86 AT3G47000 Glycosyl hydrolase family protein -0.64 0.33 -0.31
87 AT3G18035 winged-helix DNA-binding transcription factor family
protein		 HON4 -0.64 0.31 -0.31
88 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.64 0.3 -0.33
89 AT5G02020 Encodes a protein involved in salt tolerance, names SIS
(Salt Induced Serine rich).		 Salt Induced Serine rich -0.64 0.3 -0.32
90 AT4G01280 Homeodomain-like superfamily protein -0.63 0.32 -0.32
91 AT5G66420 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP033271 (InterPro:IPR008322), TIM-barrel signal
transduction protein, predicted (InterPro:IPR009215); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.63 0.31 -0.3
92 AT5G13770 Pentatricopeptide repeat (PPR-like) superfamily protein -0.62 0.32 -0.31
93 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.32 -0.31
94 AT2G45740 peroxin 11D peroxin 11D -0.62 0.33 -0.29
95 AT2G48110 reduced epidermal fluorescence 4 MED33B, REDUCED EPIDERMAL
FLUORESCENCE 4		 -0.62 0.32 -0.34
96 AT1G57870 shaggy-like kinase 42 shaggy-like kinase 42, shaggy-like
kinase 42		 -0.62 0.32 -0.34
97 AT4G31820 Phototropic-responsive NPH3 family protein ENHANCER OF PINOID, MACCHI-BOU 4,
NAKED PINS IN YUC MUTANTS 1		 -0.62 0.31 -0.31
98 AT2G39000 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.61 0.31 -0.3
99 AT3G57470 Insulinase (Peptidase family M16) family protein -0.6 0.31 -0.31
100 AT4G33500 Protein phosphatase 2C family protein -0.6 0.31 -0.31
101 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.6 0.33 -0.35
102 AT4G31270 sequence-specific DNA binding transcription factors -0.6 0.32 -0.29
103 AT3G17770 Dihydroxyacetone kinase -0.6 0.3 -0.32
104 AT1G80790 XH/XS domain-containing protein factor of DNA methylation 5 -0.6 0.33 -0.32
105 AT5G53830 VQ motif-containing protein -0.6 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
106 C0162 MST_1588.3 - - - -0.67 0.44 -0.44
107 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.66 0.42 -0.46 C0032